Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027409.1

Orthogroup ID

OG0007918

Physical Location & Seq

Genomic Coordinates Reverse (-)

9201 .. 10895

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027409.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1695 bp

atggcatttgaatgccaagtgaatactgaggtttctaagaatttgattgactctctagacaatccgctcggacaattagctgaatctaatcaaattcattctcaaattgaagctgaaaattttggtgtttcaaaagtagcttcagattcatatactaaaaaagaaaaaggtgtaatttcaaaacccaaaccagtttctagttccaagaaagcaaatccggactcttgtggttcgaaacaccttttgtcaactgatcggtcaatcactgaccttcctccagctttgatatccgaaattctgaattgccttgacccgaaagagctaggcatagtttcatgtgcatcgacatatctctgtaggctcgcatctgagcaccatgtttggaaggagttttattgtgagagatggggactttcagcggctccagcatccttgggttcaggactttctgatgacaagtcatggaaggagttttttgtcgaaagggagtttaggagcaagacttttatgggacggtatagcatggaaattttgtatggtcatactgaacctgttcgaacagttttccttttggcctcggcaaagatcttatttacgtcaggttatgaccaaaccgtaaaaatgtggaacatggaagaagggctgttgattgcttcttcaaggtctcttggttgcactatccgtgcagttgctgcagatacaaaactcttggttgctggtggcactgatggctttatccactgctggaaggcaatagaagggagtccacacttgtttaatatcaggggtcctcaaaatgagaatactgagtttcgtctgtgggagcatcagggtcctataacatctcttgccttggattttacaaggatttacagtggttcgtgggatatgactgttcgtgtatgggatcgactttcactgaagtgtgttaaggtcctgcgccatagtgattgggtcgggggaattgcacctcatgatactacagttgctagcacagctggttcggatgtctatgtttgggacactagcagtgggaatctgatgaccattattcataatgctcatgttggcaaaacttgctccttggccagaaaccacaaaggggattttctatttactggaggggaagatggtgcaattcacatgtatgaaattctgagtcatgggcttgagactaatgaatatttggttgcaacatggatccctcactcaggccctgtgcattcccttgcgtttgagtttccatggcttgtttctgcttctggtgatgggaagctatcactaattgatgtgagaaagcttttaaaaactagaaagtgtgcttcagggataagtgcttcatgtgttaagcttggagaccagagtagtgtagaacccccacagagaatgctacatggatttgcaaagaatctcctctctgtcgacattggtgctgatcgtattgtatgtgggggtgaggaaggtgttgttaggatctggaacttcacacaagctctggagattgagcgaagggctaatgctttaagaggaatacgattagagaataggatgaggcggcgtaagctccatgtagagaatagcagcaaaggtggtcgcactgatcaatgctcagttgcagccaagaagaatccagtcactggtgaaaggagtggttggcacagtaaacgtggggcgagtggcaagctgagagcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Lipase_GDSL WD40

Protein Analysis

564

Amino Acids

62.21

Weight (kDa)

8.54

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21040 AT5G21040 AT5G21040
fragaria_vesca	FvH4_3g27150 FvH4_3g27150 FvH4_3g27150
malus_domestica	MD00G1031900.v1.1 MD11G1180000.v1.1
prunus_persica	Prupe.6G152700_v2.0.a1
pyrus_communis	pycom03g11660 pycom11g15520
rosa_chinensis	RchiOBHm_Chr5g0049781
rosa_laevigata	RLG00000034647
rosa_multiflora	Rmu_sc0003181.1_g000022 Rmu_sc0008923.1_g000005 Rmu_sc0027409.1_g000004
rosa_roxburghii	Rroxscaffold_1G00031720
rosa_rugosa	Rorug05G0251100
rosa_samantha	Rh5AG327300 Rh5BG338400 Rh5CG362800 Rh5DG350500
rosa_wichuraiana	Rw0G018410 Rw5G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1637
AccBSI	CCGCTC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	1422
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	3 cut(s)	65, 419, 1555
AclWI	GGATC	4 cut(s)	915, 1195, 1208, 1481
AcoI	YGGCCR	1 cut(s)	1086
AcsI	RAATTY	6 cut(s)	40, 93, 118, 294, 528, 1152
AcuI	CTGAAG	3 cut(s)	126, 941, 1308
AfiI	CCNNNNNNNGG	3 cut(s)	1102, 1211, 1637
AflIII	ACRYGT	1 cut(s)	1143
AgsI	TTSAA	5 cut(s)	11, 110, 132, 180, 660
AleI	CACNNNNGTG	1 cut(s)	922
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	3 cut(s)	669, 1166, 1350
AlwI	GGATC	4 cut(s)	915, 1195, 1208, 1481
AlwNI	CAGNNNCTG	3 cut(s)	692, 1217, 1637
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	3 cut(s)	573, 1086, 1213
ApeKI	GCWGC	3 cut(s)	692, 1581, 1616
ApoI	RAATTY	6 cut(s)	40, 93, 118, 294, 528, 1152
Asp700I	GAANNNNTTC	1 cut(s)	552
AspLEI	GCGC	1 cut(s)	942
AspS9I	GGNCC	4 cut(s)	788, 833, 934, 1214
AsuHPI	GGTGA	3 cut(s)	1277, 1466, 1652
AsuII	TTCGAA	2 cut(s)	233, 556
AsuNHI	GCTAGC	1 cut(s)	989
AvaII	GGWCC	3 cut(s)	788, 833, 934
BaeI	ACNNNNGTAYC	2 cut(s)	969, 1002
BalI	TGGCCA	1 cut(s)	1088
BamHI	GGATCC	1 cut(s)	1200
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	679, 1593, 1628
BccI	CCATC	4 cut(s)	399, 722, 1124, 1262
BcgI	CGANNNNNNTGC	2 cut(s)	1412, 1446
BclI	TGATCA	1 cut(s)	1600
BcoDI	GTCTC	3 cut(s)	669, 1166, 1350
BfaI	CTAG	6 cut(s)	56, 198, 323, 990, 1026, 1311
BfmI	CTRYAG	3 cut(s)	355, 693, 981
BglII	AGATCT	1 cut(s)	585
BisI	GCNGC	5 cut(s)	420, 693, 1556, 1582, 1617
BlsI	GCNGC	5 cut(s)	421, 694, 1557, 1583, 1618
Bme18I	GGWCC	3 cut(s)	788, 833, 934
BmgT120I	GGNCC	4 cut(s)	788, 833, 934, 1214
BmiI	GGNNCC	4 cut(s)	423, 789, 834, 1202
BmsI	GCATC	4 cut(s)	350, 374, 437, 835
BmtI	GCTAGC	1 cut(s)	993
BpmI	CTGGAG	4 cut(s)	261, 408, 1140, 1517
Bpu14I	TTCGAA	2 cut(s)	233, 556
BpuEI	CTTGAG	1 cut(s)	1190
BsaI	GGTCTC	2 cut(s)	669, 1350
BsaJI	CCNNGG	5 cut(s)	432, 576, 852, 1083, 1244
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	3 cut(s)	1102, 1211, 1637
Bse1I	ACTGG	4 cut(s)	191, 1123, 1631, 1642
BseAI	TCCGGA	1 cut(s)	217
BseDI	CCNNGG	5 cut(s)	432, 576, 852, 1083, 1244
BseGI	GGATG	3 cut(s)	428, 1012, 1554
BseLI	CCNNNNNNNGG	3 cut(s)	1102, 1211, 1637
BseMII	CTCAG	7 cut(s)	18, 360, 798, 1148, 1224, 1623, 1676
BseNI	ACTGG	4 cut(s)	191, 1123, 1631, 1642
BseRI	GAGGAG	1 cut(s)	1403
BseXI	GCAGC	3 cut(s)	679, 1593, 1628
BsgI	GTGCAG	1 cut(s)	705
BshFI	GGCC	3 cut(s)	575, 1088, 1215
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	3 cut(s)	423, 525, 1034
BslI	CCNNNNNNNGG	3 cut(s)	1102, 1211, 1637
BsmAI	GTCTC	3 cut(s)	669, 1166, 1350
BsmFI	GGGAC	3 cut(s)	423, 525, 1034
BsmI	GAATGC	3 cut(s)	17, 1222, 1392
BsnI	GGCC	3 cut(s)	575, 1088, 1215
Bso31I	GGTCTC	2 cut(s)	669, 1350
Bsp119I	TTCGAA	2 cut(s)	233, 556
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	7 cut(s)	253, 585, 907, 1200, 1435, 1473, 1600
Bsp19I	CCATGG	1 cut(s)	1244
BspACI	CCGC	3 cut(s)	65, 419, 1555
BspANI	GGCC	3 cut(s)	575, 1088, 1215
BspCNI	CTCAG	7 cut(s)	19, 361, 799, 1149, 1223, 1622, 1677
BspEI	TCCGGA	1 cut(s)	217
BspHI	TCATGA	1 cut(s)	973
BspLI	GGNNCC	4 cut(s)	423, 789, 834, 1202
BspMAI	CTGCAG	1 cut(s)	697
BspOI	GCTAGC	1 cut(s)	993
BspPI	GGATC	4 cut(s)	915, 1195, 1208, 1481
BspT104I	TTCGAA	2 cut(s)	233, 556
BspTNI	GGTCTC	2 cut(s)	669, 1350
BsrBI	CCGCTC	1 cut(s)	67
BsrI	ACTGG	4 cut(s)	191, 1123, 1631, 1642
BssECI	CCNNGG	5 cut(s)	432, 576, 852, 1083, 1244
BssMI	GATC	7 cut(s)	253, 585, 907, 1200, 1435, 1473, 1600
BssT1I	CCWWGG	4 cut(s)	432, 852, 1083, 1244
Bst4CI	ACNGT	7 cut(s)	516, 562, 616, 875, 895, 985, 1661
BstAPI	GCANNNNNTGC	2 cut(s)	692, 1077
BstBI	TTCGAA	2 cut(s)	233, 556
BstC8I	GCNNGC	3 cut(s)	363, 991, 1682
BstDEI	CTNAG	8 cut(s)	27, 36, 369, 807, 1157, 1210, 1609, 1685
BstDSI	CCRYGG	1 cut(s)	1244
BstENI	CCTNNNNNAGG	1 cut(s)	1209
BstF5I	GGATG	3 cut(s)	428, 1012, 1554
BstHHI	GCGC	1 cut(s)	942
BstKTI	GATC	7 cut(s)	256, 588, 910, 1203, 1438, 1476, 1603
BstMAI	GTCTC	3 cut(s)	669, 1166, 1350
BstMBI	GATC	7 cut(s)	253, 585, 907, 1200, 1435, 1473, 1600
BstMWI	GCNNNNNNNGC	6 cut(s)	425, 692, 729, 995, 1077, 1561
BstNSI	RCATGY	1 cut(s)	1147
BstSFI	CTRYAG	3 cut(s)	355, 693, 981
BstV1I	GCAGC	3 cut(s)	679, 1593, 1628
BstX2I	RGATCY	3 cut(s)	585, 1200, 1473
BstYI	RGATCY	3 cut(s)	585, 1200, 1473
BsuRI	GGCC	3 cut(s)	575, 1088, 1215
BtgI	CCRYGG	1 cut(s)	1244
BtsCI	GGATG	3 cut(s)	428, 1012, 1554
BtsI	GCAGTG	2 cut(s)	739, 1036
BtsIMutI	CAGTG	8 cut(s)	264, 723, 739, 880, 917, 1036, 1596, 1635
Cac8I	GCNNGC	3 cut(s)	363, 991, 1682
CaiI	CAGNNNCTG	3 cut(s)	692, 1217, 1637
CciI	TCATGA	1 cut(s)	973
CfoI	GCGC	1 cut(s)	942
Cfr13I	GGNCC	4 cut(s)	788, 833, 934, 1214
DdeI	CTNAG	8 cut(s)	27, 36, 369, 807, 1157, 1210, 1609, 1685
DpnI	GATC	7 cut(s)	255, 587, 909, 1202, 1437, 1475, 1602
DpnII	GATC	7 cut(s)	253, 585, 907, 1200, 1435, 1473, 1600
DraI	TTTAAA	1 cut(s)	1305
EaeI	YGGCCR	1 cut(s)	1086
Eco130I	CCWWGG	4 cut(s)	432, 852, 1083, 1244
Eco31I	GGTCTC	2 cut(s)	669, 1350
Eco32I	GATATC	1 cut(s)	288
Eco47I	GGWCC	3 cut(s)	788, 833, 934
Eco57I	CTGAAG	3 cut(s)	126, 941, 1308
EcoNI	CCTNNNNNAGG	1 cut(s)	1209
EcoO109I	RGGNCCY	4 cut(s)	788, 833, 934, 1214
EcoRV	GATATC	1 cut(s)	288
EcoT14I	CCWWGG	4 cut(s)	432, 852, 1083, 1244
ErhI	CCWWGG	4 cut(s)	432, 852, 1083, 1244
FaqI	GGGAC	3 cut(s)	423, 525, 1034
FbaI	TGATCA	1 cut(s)	1600
FblI	GTMKAC	1 cut(s)	1422
Fnu4HI	GCNGC	5 cut(s)	420, 693, 1556, 1582, 1617
FokI	GGATG	3 cut(s)	415, 1019, 1561
Fsp4HI	GCNGC	5 cut(s)	420, 693, 1556, 1582, 1617
FspBI	CTAG	6 cut(s)	56, 198, 323, 990, 1026, 1311
GlaI	GCGC	1 cut(s)	941
GluI	GCNGC	5 cut(s)	420, 693, 1556, 1582, 1617
GsuI	CTGGAG	4 cut(s)	261, 408, 1140, 1517
HaeIII	GGCC	3 cut(s)	575, 1088, 1215
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	942
Hin6I	GCGC	1 cut(s)	940
HinP1I	GCGC	1 cut(s)	940
HincII	GTYRAC	2 cut(s)	249, 1423
HindII	GTYRAC	2 cut(s)	249, 1423
HindIII	AAGCTT	2 cut(s)	1298, 1349
HinfI	GANTC	9 cut(s)	50, 83, 146, 221, 763, 1036, 1159, 1408, 1627
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	3 cut(s)	1277, 1466, 1652
Hpy166II	GTNNAC	4 cut(s)	249, 767, 1423, 1664
Hpy188I	TCNGA	9 cut(s)	71, 145, 292, 300, 370, 451, 1006, 1041, 1158
Hpy188III	TCNNGA	6 cut(s)	56, 218, 441, 974, 1477, 1496
Hpy8I	GTNNAC	4 cut(s)	249, 767, 1423, 1664
HpyAV	CCTTC	8 cut(s)	281, 379, 460, 632, 742, 752, 1454, 1503
HpyCH4III	ACNGT	7 cut(s)	516, 562, 616, 875, 895, 985, 1661
HpyCH4IV	ACGT	2 cut(s)	596, 1666
HpyF10VI	GCNNNNNNNGC	6 cut(s)	425, 692, 729, 995, 1077, 1561
HpyF3I	CTNAG	8 cut(s)	27, 36, 369, 807, 1157, 1210, 1609, 1685
HpySE526I	ACGT	2 cut(s)	596, 1666
HspAI	GCGC	1 cut(s)	940
Kpn2I	TCCGGA	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	1600
Kzo9I	GATC	7 cut(s)	253, 585, 907, 1200, 1435, 1473, 1600
LmnI	GCTCC	5 cut(s)	427, 495, 823, 1085, 1569
Lsp1109I	GCAGC	3 cut(s)	679, 1593, 1628
LweI	GCATC	4 cut(s)	350, 374, 437, 835
MaeI	CTAG	6 cut(s)	56, 198, 323, 990, 1026, 1311
MaeII	ACGT	2 cut(s)	596, 1666
MaeIII	GTNAC	1 cut(s)	1633
MalI	GATC	7 cut(s)	255, 587, 909, 1202, 1437, 1475, 1602
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	7 cut(s)	253, 585, 907, 1200, 1435, 1473, 1600
MboII	GAAGA	4 cut(s)	647, 648, 1139, 1636
MflI	RGATCY	3 cut(s)	585, 1200, 1473
MhlI	GDGCHC	1 cut(s)	375
MlsI	TGGCCA	1 cut(s)	1088
MluNI	TGGCCA	1 cut(s)	1088
MlyI	GAGTC	4 cut(s)	44, 215, 772, 1168
Mox20I	TGGCCA	1 cut(s)	1088
MroI	TCCGGA	1 cut(s)	217
MroXI	GAANNNNTTC	1 cut(s)	552
MscI	TGGCCA	1 cut(s)	1088
MseI	TTAA	5 cut(s)	777, 930, 1304, 1347, 1523
MslI	CAYNNNNRTG	3 cut(s)	10, 922, 1146
Msp20I	TGGCCA	1 cut(s)	1088
MspA1I	CMGCKG	2 cut(s)	419, 998
MspI	CCGG	1 cut(s)	218
Mva1269I	GAATGC	3 cut(s)	17, 1222, 1392
MwoI	GCNNNNNNNGC	6 cut(s)	425, 692, 729, 995, 1077, 1561
NcoI	CCATGG	1 cut(s)	1244
NdeII	GATC	7 cut(s)	253, 585, 907, 1200, 1435, 1473, 1600
NheI	GCTAGC	1 cut(s)	989
NlaIV	GGNNCC	4 cut(s)	423, 789, 834, 1202
NmeAIII	GCCGAG	1 cut(s)	557
NmuCI	GTSAC	1 cut(s)	1633
NspI	RCATGY	1 cut(s)	1147
NspV	TTCGAA	2 cut(s)	233, 556
OliI	CACNNNNGTG	1 cut(s)	922
PagI	TCATGA	1 cut(s)	973
PciI	ACATGT	1 cut(s)	1143
PctI	GAATGC	3 cut(s)	17, 1222, 1392
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	5 cut(s)	83, 146, 1036, 1408, 1627
PflMI	CCANNNNNTGG	1 cut(s)	1637
PkrI	GCNGC	5 cut(s)	421, 694, 1557, 1583, 1618
PleI	GAGTC	4 cut(s)	44, 215, 771, 1167
PpsI	GAGTC	4 cut(s)	44, 215, 771, 1167
PpuMI	RGGWCCY	3 cut(s)	788, 833, 934
PscI	ACATGT	1 cut(s)	1143
Psp5II	RGGWCCY	3 cut(s)	788, 833, 934
PspN4I	GGNNCC	4 cut(s)	423, 789, 834, 1202
PspPI	GGNCC	4 cut(s)	788, 833, 934, 1214
PspPPI	RGGWCCY	3 cut(s)	788, 833, 934
PstI	CTGCAG	1 cut(s)	697
PstNI	CAGNNNCTG	3 cut(s)	692, 1217, 1637
PsuI	RGATCY	3 cut(s)	585, 1200, 1473
PvuII	CAGCTG	1 cut(s)	998
RseI	CAYNNNNRTG	3 cut(s)	10, 922, 1146
SalI	GTCGAC	1 cut(s)	1421
SaqAI	TTAA	5 cut(s)	777, 930, 1304, 1347, 1523
SatI	GCNGC	5 cut(s)	420, 693, 1556, 1582, 1617
Sau3AI	GATC	7 cut(s)	253, 585, 907, 1200, 1435, 1473, 1600
Sau96I	GGNCC	4 cut(s)	788, 833, 934, 1214
SchI	GAGTC	4 cut(s)	44, 215, 772, 1168
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	4 cut(s)	350, 374, 437, 835
SfcI	CTRYAG	3 cut(s)	355, 693, 981
SfuI	TTCGAA	2 cut(s)	233, 556
SinI	GGWCC	3 cut(s)	788, 833, 934
SmiMI	CAYNNNNRTG	3 cut(s)	10, 922, 1146
SmlI	CTYRAG	1 cut(s)	1169
SmoI	CTYRAG	1 cut(s)	1169
SsiI	CCGC	3 cut(s)	65, 419, 1555
SspI	AATATT	1 cut(s)	1184
SspMI	CTAG	6 cut(s)	56, 198, 323, 990, 1026, 1311
StyI	CCWWGG	4 cut(s)	432, 852, 1083, 1244
TaaI	ACNGT	7 cut(s)	516, 562, 616, 875, 895, 985, 1661
TaiI	ACGT	2 cut(s)	599, 1669
TaqI	TCGA	6 cut(s)	233, 344, 480, 556, 910, 1422
TaqII	GACCGA	1 cut(s)	246
TauI	GCSGC	2 cut(s)	422, 1558
TfiI	GAWTC	5 cut(s)	83, 146, 1036, 1408, 1627
Tru1I	TTAA	5 cut(s)	777, 930, 1304, 1347, 1523
Tru9I	TTAA	5 cut(s)	777, 930, 1304, 1347, 1523
TscAI	CASTG	8 cut(s)	271, 730, 746, 880, 924, 1036, 1603, 1642
TseFI	GTSAC	1 cut(s)	1633
TseI	GCWGC	3 cut(s)	692, 1581, 1616
Tsp45I	GTSAC	1 cut(s)	1633
TspDTI	ATGAA	7 cut(s)	86, 138, 324, 1043, 1164, 1194, 1329
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	8 cut(s)	271, 730, 746, 880, 924, 1036, 1603, 1642
Van91I	CCANNNNNTGG	1 cut(s)	1637
VpaK11BI	GGWCC	3 cut(s)	788, 833, 934
XagI	CCTNNNNNAGG	1 cut(s)	1209
XapI	RAATTY	6 cut(s)	40, 93, 118, 294, 528, 1152
XbaI	TCTAGA	1 cut(s)	55
XceI	RCATGY	1 cut(s)	1147
XmiI	GTMKAC	1 cut(s)	1422
XmnI	GAANNNNTTC	1 cut(s)	552
XspI	CTAG	6 cut(s)	56, 198, 323, 990, 1026, 1311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.