Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007918

Physical Location & Seq

Genomic Coordinates Forward (+)

27536834 .. 27539072

Gene Structure 2239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0251100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGATTTCGAAAAGGACACCGCCACCCTTCCTCTTGCGTGCACTGCCCATGGATGTCCTGCAAAGGCCCAAGTGAGGCAGAAGAAGAAGAAGACGAGCGCTGTCAAGTTCTTCCTATGCTTTCAAAGAGACGATGTAGTGTTTCCGTGTGTGGTGCCGATGCCCGTGCCGGTGGTTTCGTCATCTATGGCGACATCGGATAGTGATTTGGATGTAGGAAAATGCAACAATCAACAAAGGAAGCCAGAACGGCATGGATTCTTTCATGTTTTGAAAGCAATTTTGTTCAAGATGTTATTGGTCAAAAAGATTCAACAAAAGAAATCAGGTAGCAGTTTTGCAAGTATTCCAACAAAGGAGAGTTCAATTACTTCAGGGCACACTCAAGAATGGTCAGATCACGAAGATGTCCCAAAAATGATCACCAAAACAACTTCAGGGGGTAAGACCGTTTTCACTTACGTCAAAGAGAAGGAAGAGGTTGTCTTTCCGACGATGCCTGCTTCATCGTGGCTTAAAAATGAAGAAACATGTCAAGATCAATGGATCAACAAAGGACGACGTAGATTATCTCGCATTTTAAAGGCCGTCTTGTTCGAGACATCACTGGCTAGGAAGATTCAAGCAAGAAAGTTGGGGAAAAAATACGAATCAAATACGAGTTTAAGGTCTAGCACTGGAGAATCGTGCGAGGAAGATAATCATGACCTGGGAAAGTCTGCATCTTCGTTAACTAACTCTTCTGTCTTCACTTCATCTTTATTGAACTCTACATCAAGTTCATCAACAGTGTCACGCTCCACGTCACACTCGAGGTCTTTATCCGAGCGAATCAAATCTTTCCGATCAATCTCATCAAGCAATCTAAAAGCCAATTTGAGGAACTTGTCCGACAAAATTCGATCAAACTCCAACCATTTGAAGTCCAATTCGAGAAACAAGATGTCGTTGGAATCCATTAATTCGAGTGGCTTGAAAGAAGAGCAACATGCACATTTTAATGATGATGTGACTGACATTGGAAAGAACAATAAGAAGGGAGGGTGTTATCGTTCAGCTTCGGGTCTTAGCTTCTTGCTAATGAGTCTAGTGGGGTTGATTTTTTATGGTAAGCTTTGTGCCATATTGTGCACTTCAATGTGGCTTGTTTGTGTACCTCTTTGGAGTTTCGGATATCATAACTCATCAACAAACAAGGTGGTTGATAATAAGAAAGTCACCATGGGTGGAGGAATGCTAGGGGGGACTGCTCGAACTCGAACTCGAATTTTTCAGAGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Lipase_GDSL WD40

Protein Analysis

427

Amino Acids

47.32

Weight (kDa)

9.77

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21040 AT5G21040 AT5G21040
fragaria_vesca	FvH4_3g27150 FvH4_3g27150 FvH4_3g27150
malus_domestica	MD00G1031900.v1.1 MD11G1180000.v1.1
prunus_persica	Prupe.6G152700_v2.0.a1
pyrus_communis	pycom03g11660 pycom11g15520
rosa_chinensis	RchiOBHm_Chr5g0049781
rosa_laevigata	RLG00000034647
rosa_multiflora	Rmu_sc0003181.1_g000022 Rmu_sc0008923.1_g000005 Rmu_sc0027409.1_g000004
rosa_roxburghii	Rroxscaffold_1G00031720
rosa_rugosa	Rorug05G0251100
rosa_samantha	Rh5AG327300 Rh5BG338400 Rh5CG362800 Rh5DG350500
rosa_wichuraiana	Rw0G018410 Rw5G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	554
AcsI	RAATTY	2 cut(s)	897, 1266
AcuI	CTGAAG	2 cut(s)	357, 420
AfaI	GTAC	1 cut(s)	1155
AfeI	AGCGCT	1 cut(s)	100
AfiI	CCNNNNNNNGG	2 cut(s)	75, 879
AflIII	ACRYGT	1 cut(s)	530
AjiI	CACGTC	1 cut(s)	804
AjnI	CCWGG	1 cut(s)	708
AluBI	AGCT	3 cut(s)	1058, 1071, 1114
AluI	AGCT	3 cut(s)	1058, 1071, 1114
Alw21I	GWGCWC	2 cut(s)	44, 1133
Alw26I	GTCTC	2 cut(s)	123, 593
Alw44I	GTGCAC	2 cut(s)	40, 1129
AlwI	GGATC	1 cut(s)	554
Ama87I	CYCGRG	1 cut(s)	811
Aor51HI	AGCGCT	1 cut(s)	100
AoxI	GGCC	2 cut(s)	66, 585
ApaLI	GTGCAC	2 cut(s)	40, 1129
ApoI	RAATTY	2 cut(s)	897, 1266
AseI	ATTAAT	1 cut(s)	960
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	2 cut(s)	415, 1210
AsuII	TTCGAA	1 cut(s)	9
AvaI	CYCGRG	1 cut(s)	811
BaeGI	GKGCMC	3 cut(s)	44, 381, 1133
BanI	GGYRCC	1 cut(s)	154
BbsI	GAAGAC	2 cut(s)	98, 739
Bbv12I	GWGCWC	2 cut(s)	44, 1133
BceAI	ACGGC	2 cut(s)	266, 572
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	1 cut(s)	710
BclI	TGATCA	1 cut(s)	420
BcoDI	GTCTC	2 cut(s)	123, 593
BfaI	CTAG	4 cut(s)	612, 672, 1088, 1238
BfoI	RGCGCY	1 cut(s)	102
BglI	GCCNNNNNGGC	1 cut(s)	250
Bme1390I	CCNGG	1 cut(s)	710
BmeT110I	CYCGRG	1 cut(s)	811
BmgBI	CACGTC	1 cut(s)	804
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	710
BmsI	GCATC	3 cut(s)	150, 486, 731
BpiI	GAAGAC	2 cut(s)	98, 739
BpmI	CTGGAG	1 cut(s)	699
Bpu14I	TTCGAA	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	49, 709, 1221
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 879
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	612, 682
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	3 cut(s)	49, 709, 1221
BseGI	GGATG	2 cut(s)	59, 217
BseLI	CCNNNNNNNGG	2 cut(s)	75, 879
BseNI	ACTGG	2 cut(s)	612, 682
BseSI	GKGCMC	3 cut(s)	44, 381, 1133
BshFI	GGCC	2 cut(s)	68, 587
BshNI	GGYRCC	1 cut(s)	154
BsiHKAI	GWGCWC	2 cut(s)	44, 1133
BsiHKCI	CYCGRG	1 cut(s)	811
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	2 cut(s)	395, 1258
BslI	CCNNNNNNNGG	2 cut(s)	75, 879
BsmAI	GTCTC	2 cut(s)	123, 593
BsmBI	CGTCTC	1 cut(s)	123
BsmFI	GGGAC	2 cut(s)	395, 1258
BsmI	GAATGC	1 cut(s)	1239
BsnI	GGCC	2 cut(s)	68, 587
BsoBI	CYCGRG	1 cut(s)	811
Bsp119I	TTCGAA	1 cut(s)	9
Bsp1286I	GDGCHC	3 cut(s)	44, 381, 1133
Bsp143I	GATC	6 cut(s)	397, 420, 538, 546, 845, 902
Bsp19I	CCATGG	2 cut(s)	49, 1221
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	2 cut(s)	68, 587
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	554
BspQI	GCTCTTC	1 cut(s)	975
BspT104I	TTCGAA	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	612, 682
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	3 cut(s)	49, 709, 1221
BssMI	GATC	6 cut(s)	397, 420, 538, 546, 845, 902
BssT1I	CCWWGG	2 cut(s)	49, 1221
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	2 cut(s)	451, 790
Bst6I	CTCTTC	3 cut(s)	471, 745, 975
BstBI	TTCGAA	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	40, 501
BstDEI	CTNAG	1 cut(s)	1067
BstDSI	CCRYGG	2 cut(s)	49, 1221
BstF5I	GGATG	2 cut(s)	59, 217
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	6 cut(s)	400, 423, 541, 549, 848, 905
BstMAI	GTCTC	2 cut(s)	123, 593
BstMBI	GATC	6 cut(s)	397, 420, 538, 546, 845, 902
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 250
BstNI	CCWGG	1 cut(s)	710
BstNSI	RCATGY	2 cut(s)	534, 992
BstSCI	CCNGG	1 cut(s)	708
BstSLI	GKGCMC	3 cut(s)	44, 381, 1133
BstV2I	GAAGAC	2 cut(s)	98, 739
BsuRI	GGCC	2 cut(s)	68, 587
BtgI	CCRYGG	2 cut(s)	49, 1221
BtrI	CACGTC	1 cut(s)	804
BtsCI	GGATG	2 cut(s)	59, 217
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	4 cut(s)	42, 605, 675, 795
Cac8I	GCNNGC	2 cut(s)	40, 501
CciI	TCATGA	1 cut(s)	703
CfoI	GCGC	1 cut(s)	101
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	1154
CspCI	CAANNNNNGTGG	2 cut(s)	1179, 1214
CviAII	CATG	7 cut(s)	50, 254, 266, 531, 704, 989, 1222
CviQI	GTAC	1 cut(s)	1154
DdeI	CTNAG	1 cut(s)	1067
DpnI	GATC	6 cut(s)	399, 422, 540, 548, 847, 904
DpnII	GATC	6 cut(s)	397, 420, 538, 546, 845, 902
DraI	TTTAAA	1 cut(s)	582
Eam1104I	CTCTTC	3 cut(s)	471, 745, 975
EarI	CTCTTC	3 cut(s)	471, 745, 975
Eco130I	CCWWGG	2 cut(s)	49, 1221
Eco32I	GATATC	1 cut(s)	1175
Eco47III	AGCGCT	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	357, 420
Eco88I	CYCGRG	1 cut(s)	811
EcoRII	CCWGG	1 cut(s)	708
EcoRV	GATATC	1 cut(s)	1175
EcoT14I	CCWWGG	2 cut(s)	49, 1221
ErhI	CCWWGG	2 cut(s)	49, 1221
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	7 cut(s)	53, 257, 269, 534, 707, 992, 1225
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	2 cut(s)	395, 1258
FatI	CATG	7 cut(s)	49, 253, 265, 530, 703, 988, 1221
FbaI	TGATCA	1 cut(s)	420
FokI	GGATG	2 cut(s)	66, 224
FspBI	CTAG	4 cut(s)	612, 672, 1088, 1238
GlaI	GCGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	699
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	68, 587
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	7 cut(s)	53, 257, 269, 534, 707, 992, 1225
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HindIII	AAGCTT	1 cut(s)	1112
HinfI	GANTC	9 cut(s)	258, 310, 619, 650, 683, 831, 953, 1084, 1276
HpaI	GTTAAC	1 cut(s)	732
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	2 cut(s)	415, 1210
Hpy166II	GTNNAC	4 cut(s)	42, 732, 1131, 1154
Hpy188I	TCNGA	8 cut(s)	199, 397, 492, 826, 845, 892, 1172, 1275
Hpy188III	TCNNGA	7 cut(s)	289, 386, 401, 536, 598, 704, 933
Hpy8I	GTNNAC	4 cut(s)	42, 732, 1131, 1154
Hpy99I	CGWCG	2 cut(s)	496, 564
HpyAV	CCTTC	3 cut(s)	38, 466, 1030
HpyCH4III	ACNGT	2 cut(s)	451, 790
HpyCH4IV	ACGT	3 cut(s)	462, 562, 803
HpyCH4V	TGCA	7 cut(s)	42, 62, 225, 341, 722, 992, 1131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 250
HpyF3I	CTNAG	1 cut(s)	1067
HpySE526I	ACGT	3 cut(s)	462, 562, 803
Hsp92II	CATG	7 cut(s)	53, 257, 269, 534, 707, 992, 1225
HspAI	GCGC	1 cut(s)	99
Ksp22I	TGATCA	1 cut(s)	420
KspAI	GTTAAC	1 cut(s)	732
Kzo9I	GATC	6 cut(s)	397, 420, 538, 546, 845, 902
LguI	GCTCTTC	1 cut(s)	975
LmnI	GCTCC	1 cut(s)	803
LweI	GCATC	3 cut(s)	150, 486, 731
MaeI	CTAG	4 cut(s)	612, 672, 1088, 1238
MaeII	ACGT	3 cut(s)	462, 562, 803
MaeIII	GTNAC	4 cut(s)	792, 804, 1009, 1216
MalI	GATC	6 cut(s)	399, 422, 540, 548, 847, 904
MboI	GATC	6 cut(s)	397, 420, 538, 546, 845, 902
MhlI	GDGCHC	3 cut(s)	44, 381, 1133
MluCI	AATT	7 cut(s)	279, 366, 874, 897, 928, 961, 1266
MlyI	GAGTC	1 cut(s)	1093
MmeI	TCCRAC	5 cut(s)	374, 515, 915, 930, 936
MnlI	CCTC	9 cut(s)	42, 69, 472, 685, 807, 873, 1034, 1167, 1223
MseI	TTAA	6 cut(s)	516, 581, 665, 731, 960, 999
MslI	CAYNNNNRTG	3 cut(s)	405, 999, 1136
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	710
Mva1269I	GAATGC	1 cut(s)	1239
MvaI	CCWGG	1 cut(s)	710
MwoI	GCNNNNNNNGC	2 cut(s)	44, 250
NcoI	CCATGG	2 cut(s)	49, 1221
NdeII	GATC	6 cut(s)	397, 420, 538, 546, 845, 902
NlaIII	CATG	7 cut(s)	53, 257, 269, 534, 707, 992, 1225
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	4 cut(s)	792, 804, 1009, 1216
NspI	RCATGY	2 cut(s)	534, 992
NspV	TTCGAA	1 cut(s)	9
PaeR7I	CTCGAG	1 cut(s)	811
PagI	TCATGA	1 cut(s)	703
PciI	ACATGT	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	975
PcsI	WCGNNNNNNNCGW	1 cut(s)	809
PctI	GAATGC	1 cut(s)	1239
PfeI	GAWTC	7 cut(s)	258, 310, 619, 650, 683, 831, 953
PleI	GAGTC	1 cut(s)	1092
PpsI	GAGTC	1 cut(s)	1092
PscI	ACATGT	1 cut(s)	530
PshBI	ATTAAT	1 cut(s)	960
Psp6I	CCWGG	1 cut(s)	708
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	67
PspXI	VCTCGAGB	1 cut(s)	811
RsaI	GTAC	1 cut(s)	1155
RsaNI	GTAC	1 cut(s)	1154
RseI	CAYNNNNRTG	3 cut(s)	405, 999, 1136
SapI	GCTCTTC	1 cut(s)	975
SaqAI	TTAA	6 cut(s)	516, 581, 665, 731, 960, 999
Sau3AI	GATC	6 cut(s)	397, 420, 538, 546, 845, 902
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	1093
ScrFI	CCNGG	1 cut(s)	710
SduI	GDGCHC	3 cut(s)	44, 381, 1133
SfaNI	GCATC	3 cut(s)	150, 486, 731
Sfr274I	CTCGAG	1 cut(s)	811
SfuI	TTCGAA	1 cut(s)	9
SlaI	CTCGAG	1 cut(s)	811
SmiMI	CAYNNNNRTG	3 cut(s)	405, 999, 1136
SmlI	CTYRAG	2 cut(s)	384, 811
SmoI	CTYRAG	2 cut(s)	384, 811
Sse9I	AATT	7 cut(s)	279, 366, 874, 897, 928, 961, 1266
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	4 cut(s)	612, 672, 1088, 1238
StyD4I	CCNGG	1 cut(s)	708
StyI	CCWWGG	2 cut(s)	49, 1221
TaaI	ACNGT	2 cut(s)	451, 790
TaiI	ACGT	3 cut(s)	465, 565, 806
TaqI	TCGA	9 cut(s)	9, 597, 812, 901, 932, 965, 1252, 1258, 1264
TasI	AATT	7 cut(s)	279, 366, 874, 897, 928, 961, 1266
TfiI	GAWTC	7 cut(s)	258, 310, 619, 650, 683, 831, 953
Tru1I	TTAA	6 cut(s)	516, 581, 665, 731, 960, 999
Tru9I	TTAA	6 cut(s)	516, 581, 665, 731, 960, 999
TscAI	CASTG	4 cut(s)	49, 612, 682, 795
TseFI	GTSAC	4 cut(s)	792, 804, 1009, 1216
Tsp45I	GTSAC	4 cut(s)	792, 804, 1009, 1216
TspDTI	ATGAA	5 cut(s)	254, 495, 537, 744, 771
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	4 cut(s)	49, 612, 682, 795
VneI	GTGCAC	2 cut(s)	40, 1129
VspI	ATTAAT	1 cut(s)	960
XapI	RAATTY	2 cut(s)	897, 1266
XceI	RCATGY	2 cut(s)	534, 992
XhoI	CTCGAG	1 cut(s)	811
XspI	CTAG	4 cut(s)	612, 672, 1088, 1238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.