Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030861.1

Orthogroup ID

OG0002784

Physical Location & Seq

Genomic Coordinates Reverse (-)

8927 .. 9691

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030861.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgtcgggccaaccatgtcttctttcaattgtgtttggatttggtcgggccggcattgtctatctttattctctaattataaatgaatcgggcctggctgaccatgccgggctcggtccaacccggtccaatttacaggtgtatgatgtgaccgtgcgacaaggaactctggtctggtcaatgtgttttcaaaaacccacaacaaaaccccaacacaggctccatagactcgaagagcaagaagccatgggtttcgctacagaatccaaatggttaagagccaccatagccgtcgcactcgcagctctctccgcctccactgctctttctctgtatttcttgaaaagaaaatccaaggatctggactccaagatcagggagctcgagaaatccctcaaggactccttaaagcactgtgcttccgaaaggcaaggtcgaattcgggctcagcaggtaactcaaacattcaccattaacccttttgtgtatcgtaggtatctcatcatatggcatttgcacatttctactctagttgctaaattcttgacatttttatctatcaaggctttgaggaaatcgctgacggaaccaaaggttgatgatttggagctgacttcttaccccatggcacctattggtgtcatccagtcatgcttctccaccaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0066

Protein Analysis

222

Amino Acids

25.05

Weight (kDa)

9.75

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28020 AT4G28020 AT4G28020 AT4G28020
fragaria_vesca	FvH4_4g08360 FvH4_4g08360 FvH4_4g08360 FvH4_4g08360 FvH4_4g08360 FvH4_4g08360 FvH4_4g08360 FvH4_4g08360 FvH4_4g08360 FvH4_4g08360 FvH4_4g08360 FvH4_4g08360 FvH4_4g08360 FvH4_4g08360 FvH4_4g08360
malus_domestica	MD13G1262500.v1.1
prunus_persica	Prupe.1G095000_v2.0.a1 Prupe.1G095000_v2.0.a1 Prupe.1G095000_v2.0.a1 Prupe.1G095000_v2.0.a1 Prupe.1G095000_v2.0.a1 Prupe.1G095000_v2.0.a1 Prupe.1G095000_v2.0.a1
pyrus_communis	pycom13g24450
rosa_chinensis	RchiOBHm_Chr4g0404161
rosa_laevigata	RLG00000008924
rosa_multiflora	Rmu_sc0001785.1_g000031 Rmu_sc0030861.1_g000001
rosa_roxburghii	Rroxscaffold_5G00348650
rosa_rugosa	Rorug04G0047100
rosa_samantha	Rh4AG123400 Rh4BG116000 Rh4CG131300 Rh4DG116000
rosa_wichuraiana	Rw4G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
Acc36I	ACCTGC	1 cut(s)	442
AccB1I	GGYRCC	1 cut(s)	628
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	366
AcsI	RAATTY	2 cut(s)	438, 539
AfiI	CCNNNNNNNGG	2 cut(s)	216, 375
AgsI	TTSAA	3 cut(s)	27, 191, 343
AjnI	CCWGG	2 cut(s)	93, 662
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AluBI	AGCT	3 cut(s)	305, 382, 610
AluI	AGCT	3 cut(s)	305, 382, 610
Alw21I	GWGCWC	1 cut(s)	384
AlwI	GGATC	1 cut(s)	366
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	3 cut(s)	7, 48, 91
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	2 cut(s)	438, 539
AspS9I	GGNCC	5 cut(s)	7, 48, 91, 116, 126
AsuC2I	CCSGG	2 cut(s)	109, 124
AsuHPI	GGTGA	1 cut(s)	460
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	2 cut(s)	116, 126
BanI	GGYRCC	1 cut(s)	628
BanII	GRGCYC	3 cut(s)	114, 384, 448
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	95, 664
BcnI	CCSGG	2 cut(s)	109, 124
BfaI	CTAG	1 cut(s)	530
BfmI	CTRYAG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	442
BisI	GCNGC	1 cut(s)	303
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	4 cut(s)	95, 109, 124, 664
Bme18I	GGWCC	2 cut(s)	116, 126
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	5 cut(s)	7, 48, 91, 116, 126
BmiI	GGNNCC	3 cut(s)	221, 588, 630
BmrFI	CCNGG	4 cut(s)	95, 109, 124, 664
BpiI	GAAGAC	1 cut(s)	11
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	2 cut(s)	109, 124
BsaJI	CCNNGG	3 cut(s)	246, 354, 624
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 375
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	646
BseBI	CCWGG	2 cut(s)	95, 664
BseDI	CCNNGG	3 cut(s)	246, 354, 624
BseGI	GGATG	1 cut(s)	642
BseLI	CCNNNNNNNGG	2 cut(s)	216, 375
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	1 cut(s)	646
BseXI	GCAGC	1 cut(s)	314
BshFI	GGCC	3 cut(s)	9, 50, 93
BshNI	GGYRCC	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	3 cut(s)	51, 108, 124
BslI	CCNNNNNNNGG	2 cut(s)	216, 375
BsnI	GGCC	3 cut(s)	9, 50, 93
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	3 cut(s)	114, 384, 448
Bsp143I	GATC	2 cut(s)	358, 372
Bsp1720I	GCTNAGC	1 cut(s)	447
Bsp19I	CCATGG	2 cut(s)	246, 624
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	3 cut(s)	9, 50, 93
BspCNI	CTCAG	1 cut(s)	460
BspLI	GGNNCC	3 cut(s)	221, 588, 630
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	366
BspQI	GCTCTTC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	628
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	646
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	3 cut(s)	246, 354, 624
BssMI	GATC	2 cut(s)	358, 372
BssT1I	CCWWGG	3 cut(s)	246, 354, 624
Bst2UI	CCWGG	2 cut(s)	95, 664
Bst4CI	ACNGT	2 cut(s)	154, 416
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	2 cut(s)	246, 624
BstF5I	GGATG	1 cut(s)	642
BstKTI	GATC	2 cut(s)	361, 375
BstMBI	GATC	2 cut(s)	358, 372
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 287, 302, 311, 320
BstNI	CCWGG	2 cut(s)	95, 664
BstSCI	CCNGG	4 cut(s)	93, 107, 122, 662
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	314
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	3 cut(s)	9, 50, 93
BtgI	CCRYGG	2 cut(s)	246, 624
BtsCI	GGATG	1 cut(s)	642
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	2 cut(s)	318, 412
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	5 cut(s)	7, 48, 91, 116, 126
CsiI	ACCWGGT	1 cut(s)	662
CviAII	CATG	5 cut(s)	15, 104, 247, 625, 651
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	2 cut(s)	360, 374
DpnII	GATC	2 cut(s)	358, 372
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	301
Ecl136II	GAGCTC	1 cut(s)	382
Eco130I	CCWWGG	3 cut(s)	246, 354, 624
Eco24I	GRGCYC	3 cut(s)	114, 384, 448
Eco47I	GGWCC	2 cut(s)	116, 126
Eco53kI	GAGCTC	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	93, 662
EcoT14I	CCWWGG	3 cut(s)	246, 354, 624
EcoT38I	GRGCYC	3 cut(s)	114, 384, 448
ErhI	CCWWGG	3 cut(s)	246, 354, 624
FaeI	CATG	5 cut(s)	18, 107, 250, 628, 654
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	5 cut(s)	14, 103, 246, 624, 650
FauNDI	CATATG	1 cut(s)	506
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	3 cut(s)	114, 384, 448
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	530
GluI	GCNGC	1 cut(s)	303
HaeIII	GGCC	3 cut(s)	9, 50, 93
HapII	CCGG	3 cut(s)	51, 108, 124
Hin1II	CATG	5 cut(s)	18, 107, 250, 628, 654
HinfI	GANTC	5 cut(s)	86, 228, 263, 365, 401
HpaII	CCGG	3 cut(s)	51, 108, 124
HphI	GGTGA	1 cut(s)	460
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	4 cut(s)	340, 362, 385, 544
Hpy99I	CGWCG	1 cut(s)	296
HpyCH4III	ACNGT	2 cut(s)	154, 416
HpyCH4V	TGCA	1 cut(s)	517
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 287, 302, 311, 320
HpyF3I	CTNAG	1 cut(s)	447
Hsp92II	CATG	5 cut(s)	18, 107, 250, 628, 654
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	358, 372
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	3 cut(s)	225, 379, 607
Lsp1109I	GCAGC	1 cut(s)	314
MabI	ACCWGGT	1 cut(s)	662
MaeI	CTAG	1 cut(s)	530
MaeIII	GTNAC	2 cut(s)	148, 454
MalI	GATC	2 cut(s)	360, 374
MboI	GATC	2 cut(s)	358, 372
MboII	GAAGA	2 cut(s)	11, 245
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	3 cut(s)	114, 384, 448
MluCI	AATT	5 cut(s)	27, 75, 130, 438, 539
MlyI	GAGTC	3 cut(s)	222, 359, 395
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	3 cut(s)	325, 404, 564
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	3 cut(s)	275, 407, 474
MspI	CCGG	3 cut(s)	51, 108, 124
MspR9I	CCNGG	4 cut(s)	95, 109, 124, 664
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	2 cut(s)	95, 664
MwoI	GCNNNNNNNGC	5 cut(s)	104, 287, 302, 311, 320
NaeI	GCCGGC	1 cut(s)	52
NciI	CCSGG	2 cut(s)	109, 124
NcoI	CCATGG	2 cut(s)	246, 624
NdeI	CATATG	1 cut(s)	506
NdeII	GATC	2 cut(s)	358, 372
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	5 cut(s)	18, 107, 250, 628, 654
NlaIV	GGNNCC	3 cut(s)	221, 588, 630
NmuCI	GTSAC	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	228
PdiI	GCCGGC	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	86, 263
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	3 cut(s)	222, 359, 395
PpsI	GAGTC	3 cut(s)	222, 359, 395
PsiI	TTATAA	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	93, 662
PspGI	CCWGG	2 cut(s)	93, 662
PspN4I	GGNNCC	3 cut(s)	221, 588, 630
PspPI	GGNCC	5 cut(s)	7, 48, 91, 116, 126
PsuI	RGATCY	1 cut(s)	358
SacI	GAGCTC	1 cut(s)	384
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	275, 407, 474
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	2 cut(s)	358, 372
Sau96I	GGNCC	5 cut(s)	7, 48, 91, 116, 126
SchI	GAGTC	3 cut(s)	222, 359, 395
ScrFI	CCNGG	4 cut(s)	95, 109, 124, 664
SduI	GDGCHC	3 cut(s)	114, 384, 448
SexAI	ACCWGGT	1 cut(s)	662
SfcI	CTRYAG	1 cut(s)	258
Sfr274I	CTCGAG	1 cut(s)	383
SinI	GGWCC	2 cut(s)	116, 126
SlaI	CTCGAG	1 cut(s)	383
SmlI	CTYRAG	2 cut(s)	383, 395
SmoI	CTYRAG	2 cut(s)	383, 395
Sse9I	AATT	5 cut(s)	27, 75, 130, 438, 539
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	1 cut(s)	530
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	4 cut(s)	93, 107, 122, 662
StyI	CCWWGG	3 cut(s)	246, 354, 624
TaaI	ACNGT	2 cut(s)	154, 416
TaqI	TCGA	3 cut(s)	231, 384, 436
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	5 cut(s)	27, 75, 130, 438, 539
TfiI	GAWTC	2 cut(s)	86, 263
Tru1I	TTAA	3 cut(s)	275, 407, 474
Tru9I	TTAA	3 cut(s)	275, 407, 474
TscAI	CASTG	2 cut(s)	325, 419
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	599
TspRI	CASTG	2 cut(s)	325, 419
VpaK11BI	GGWCC	2 cut(s)	116, 126
XapI	RAATTY	2 cut(s)	438, 539
XhoI	CTCGAG	1 cut(s)	383
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.