Rorug04G0047100

Uncharacterised protein family UPF0066

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002784
Physical Location & Seq
Forward (+)
7289432 .. 7297339
7908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0047100.1

Sequence Viewer

Length: 1026 bp
ATGGGAATCGAGGTTGTGTACGAGGAAGAAGAGAAAATGAGTAGCCAACAAAACACCTCAGATCCTTATTACGATCCAGATGTTGATGTCATTGGCACAGAGTTTACAGGTTGCTTGCTTCAGTTTTGGACTGGTTGGGATTTAGGCGGAATCGGAACGAGGCAGTATGATAAACCATTAGCTGATGATATGCACAAGACACAGTTTTGCAACTTGAAATTTCAACCTGCTGATATGTCACCAGATAGCTGCTCTGGTATTGTTGATGAAGATGATTACCTCACTGAGGCATTTAGGACTGAAGTTCAAAAGTCTTACTTGTCAAATGAGTGGGCTAGTTACATTCAATGTGTAGGGCAGAAATTTCGTGGCGGTTCCCCTGAGTTTCGAGACAGGCTCAGAAAGTATGCTATTGAAGTTGGGTTCAGCTTTGTATTTATTAGAAATGACTGGGACAGAATTCATGCAGTTTGTTCCAATTGGGGAACCGAAGGATGTGAGTGGAATGTCCGTGGTTATGTATTGCCTGCAAATGGTTGCTTTATTATTGGTGAGTTGGACAATGTCCATTCTTGCAAAGGTGTTCTTCGAAAGCAAAAACATGAGCTTTTGGGATCAAAAATTGTCAAGTCATGTATTGAAGAGGACATTAGCTATAACTTGTCATTGAAGCCAAGGGAAATTATCAGCAAGTTCAAGTCAGCTTATGGGTTTGATATATCATACAAGGTTGCTTGGAAAGCAAAGCAGAAGGCTAGGGAAATGATTTATGGCTCTGAGGCTGATTCGTTTAACATGTTAACATGGTATAGGGAAGCTGTATTTGAGACGAACCCCGGTTCTTCTTTTGTTTTGGAAGTTGATTCATCGAGTAATCGGTTCCAGAGGCTTTTCCTAGCTTATGCAGGCTGTGTTCGTGGCTTTGAATTCTGTCTTCCCATCTTGTATGTCGATGGGACTTTTGGGAAGAGTGTCTACAAGGGGCAGATACTTTGTGCAACCGGAAAGAATGGAAATCATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0066

Protein Analysis

341

Amino Acids

38.89

Weight (kDa)

5.19

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 117 - 183 3.8e-10 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AccI GTMKAC 1 cut(s) 975
AciI CCGC 2 cut(s) 147, 372
AclWI GGATC 3 cut(s) 56, 68, 622
AcsI RAATTY 4 cut(s) 218, 362, 459, 926
AcuI CTGAAG 2 cut(s) 104, 321
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 286, 533
AflIII ACRYGT 1 cut(s) 795
AgsI TTSAA 9 cut(s) 217, 224, 308, 347, 416, 641, 670, 697, 926
AluBI AGCT 8 cut(s) 182, 249, 429, 607, 654, 704, 818, 899
AluI AGCT 8 cut(s) 182, 249, 429, 607, 654, 704, 818, 899
Alw26I GTCTC 2 cut(s) 384, 821
AlwI GGATC 3 cut(s) 56, 68, 622
ApeKI GCWGC 1 cut(s) 249
ApoI RAATTY 4 cut(s) 218, 362, 459, 926
AsuC2I CCSGG 1 cut(s) 837
AsuHPI GGTGA 2 cut(s) 231, 563
AsuII TTCGAA 1 cut(s) 589
BarI GAAGNNNNNNTAC 2 cut(s) 959, 991
BbsI GAAGAC 1 cut(s) 926
BbvI GCAGC 1 cut(s) 236
BccI CCATC 2 cut(s) 947, 947
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BcnI CCSGG 1 cut(s) 837
BcoDI GTCTC 2 cut(s) 384, 821
BfaI CTAG 3 cut(s) 336, 756, 896
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 1 cut(s) 837
BmiI GGNNCC 3 cut(s) 376, 487, 881
BmrFI CCNGG 1 cut(s) 837
BmrI ACTGGG 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 926
BplI GAGNNNNNCTC 2 cut(s) 381, 413
Bpu14I TTCGAA 1 cut(s) 589
BpuMI CCSGG 1 cut(s) 837
BsaJI CCNNGG 3 cut(s) 511, 674, 835
BsaWI WCCGGW 1 cut(s) 1001
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 533
Bse1I ACTGG 2 cut(s) 136, 455
BseDI CCNNGG 3 cut(s) 511, 674, 835
BseGI GGATG 1 cut(s) 500
BseLI CCNNNNNNNGG 2 cut(s) 286, 533
BseMII CTCAG 5 cut(s) 72, 276, 372, 412, 768
BseNI ACTGG 2 cut(s) 136, 455
BseXI GCAGC 1 cut(s) 236
BsiSI CCGG 2 cut(s) 837, 1002
BslFI GGGAC 2 cut(s) 467, 970
BslI CCNNNNNNNGG 2 cut(s) 286, 533
BsmAI GTCTC 2 cut(s) 384, 821
BsmBI CGTCTC 1 cut(s) 821
BsmFI GGGAC 2 cut(s) 467, 970
Bsp119I TTCGAA 1 cut(s) 589
Bsp143I GATC 3 cut(s) 61, 73, 614
BspACI CCGC 2 cut(s) 147, 372
BspCNI CTCAG 5 cut(s) 71, 277, 373, 411, 769
BspHI TCATGA 1 cut(s) 1018
BspLI GGNNCC 3 cut(s) 376, 487, 881
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 3 cut(s) 56, 68, 622
BspT104I TTCGAA 1 cut(s) 589
BsrI ACTGG 2 cut(s) 136, 455
BssECI CCNNGG 3 cut(s) 511, 674, 835
BssMI GATC 3 cut(s) 61, 73, 614
BssT1I CCWWGG 1 cut(s) 674
Bst4CI ACNGT 1 cut(s) 204
Bst6I CTCTTC 3 cut(s) 24, 636, 962
BstBI TTCGAA 1 cut(s) 589
BstC8I GCNNGC 3 cut(s) 116, 528, 907
BstDEI CTNAG 5 cut(s) 58, 285, 381, 398, 777
BstDSI CCRYGG 1 cut(s) 511
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 500
BstKTI GATC 3 cut(s) 64, 76, 617
BstMAI GTCTC 2 cut(s) 384, 821
BstMBI GATC 3 cut(s) 61, 73, 614
BstMWI GCNNNNNNNGC 1 cut(s) 740
BstNSI RCATGY 1 cut(s) 799
BstSCI CCNGG 1 cut(s) 835
BstV1I GCAGC 1 cut(s) 236
BstV2I GAAGAC 1 cut(s) 926
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 511
BtsCI GGATG 1 cut(s) 500
BtsIMutI CAGTG 1 cut(s) 282
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 3 cut(s) 116, 528, 907
CciI TCATGA 1 cut(s) 1018
Csp6I GTAC 1 cut(s) 19
CviAII CATG 6 cut(s) 464, 602, 633, 796, 804, 1019
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 5 cut(s) 58, 285, 381, 398, 777
DpnI GATC 3 cut(s) 63, 75, 616
DpnII GATC 3 cut(s) 61, 73, 614
Eam1104I CTCTTC 3 cut(s) 24, 636, 962
EarI CTCTTC 3 cut(s) 24, 636, 962
EciI GGCGGA 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 674
Eco57I CTGAAG 2 cut(s) 104, 321
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoRI GAATTC 2 cut(s) 459, 926
EcoT14I CCWWGG 1 cut(s) 674
ErhI CCWWGG 1 cut(s) 674
Esp3I CGTCTC 1 cut(s) 821
FaeI CATG 6 cut(s) 467, 605, 636, 799, 807, 1022
FalI AAGNNNNNCTT 4 cut(s) 302, 334, 570, 602
FaqI GGGAC 2 cut(s) 467, 970
FatI CATG 6 cut(s) 463, 601, 632, 795, 803, 1018
FblI GTMKAC 1 cut(s) 975
Fnu4HI GCNGC 1 cut(s) 250
FokI GGATG 1 cut(s) 507
Fsp4HI GCNGC 1 cut(s) 250
FspBI CTAG 3 cut(s) 336, 756, 896
GluI GCNGC 1 cut(s) 250
HapII CCGG 2 cut(s) 837, 1002
Hin1II CATG 6 cut(s) 467, 605, 636, 799, 807, 1022
HincII GTYRAC 1 cut(s) 801
HindII GTYRAC 1 cut(s) 801
HinfI GANTC 4 cut(s) 6, 150, 785, 863
HpaI GTTAAC 1 cut(s) 801
HpaII CCGG 2 cut(s) 837, 1002
HphI GGTGA 2 cut(s) 231, 563
Hpy166II GTNNAC 4 cut(s) 19, 105, 801, 976
Hpy188I TCNGA 4 cut(s) 61, 155, 401, 778
Hpy188III TCNNGA 4 cut(s) 77, 389, 883, 1019
Hpy8I GTNNAC 4 cut(s) 19, 105, 801, 976
HpyAV CCTTC 2 cut(s) 485, 745
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4V TGCA 7 cut(s) 193, 210, 467, 530, 576, 905, 998
HpyF10VI GCNNNNNNNGC 1 cut(s) 740
HpyF3I CTNAG 5 cut(s) 58, 285, 381, 398, 777
Hsp92II CATG 6 cut(s) 467, 605, 636, 799, 807, 1022
KspAI GTTAAC 1 cut(s) 801
Kzo9I GATC 3 cut(s) 61, 73, 614
Lsp1109I GCAGC 1 cut(s) 236
MaeI CTAG 3 cut(s) 336, 756, 896
MaeIII GTNAC 2 cut(s) 237, 338
MalI GATC 3 cut(s) 63, 75, 616
MboI GATC 3 cut(s) 61, 73, 614
MboII GAAGA 8 cut(s) 38, 41, 281, 578, 653, 834, 926, 979
MfeI CAATTG 1 cut(s) 478
MflI RGATCY 1 cut(s) 61
MluCI AATT 7 cut(s) 218, 362, 459, 478, 621, 681, 926
MmeI TCCRAC 1 cut(s) 537
MnlI CCTC 9 cut(s) 4, 16, 67, 153, 280, 290, 637, 772, 879
MseI TTAA 2 cut(s) 792, 800
MspI CCGG 2 cut(s) 837, 1002
MspR9I CCNGG 1 cut(s) 837
MunI CAATTG 1 cut(s) 478
MwoI GCNNNNNNNGC 1 cut(s) 740
NciI CCSGG 1 cut(s) 837
NdeII GATC 3 cut(s) 61, 73, 614
NlaIII CATG 6 cut(s) 467, 605, 636, 799, 807, 1022
NlaIV GGNNCC 3 cut(s) 376, 487, 881
NmuCI GTSAC 1 cut(s) 237
NspI RCATGY 1 cut(s) 799
NspV TTCGAA 1 cut(s) 589
PagI TCATGA 1 cut(s) 1018
PciI ACATGT 1 cut(s) 795
PfeI GAWTC 4 cut(s) 6, 150, 785, 863
PflFI GACNNNGTC 1 cut(s) 563
PkrI GCNGC 1 cut(s) 251
PscI ACATGT 1 cut(s) 795
PspN4I GGNNCC 3 cut(s) 376, 487, 881
PsuI RGATCY 1 cut(s) 61
PsyI GACNNNGTC 1 cut(s) 563
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SaqAI TTAA 2 cut(s) 792, 800
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 3 cut(s) 61, 73, 614
ScrFI CCNGG 1 cut(s) 837
SfuI TTCGAA 1 cut(s) 589
Sse9I AATT 7 cut(s) 218, 362, 459, 478, 621, 681, 926
SsiI CCGC 2 cut(s) 147, 372
SspMI CTAG 3 cut(s) 336, 756, 896
StyD4I CCNGG 1 cut(s) 835
StyI CCWWGG 1 cut(s) 674
TaaI ACNGT 1 cut(s) 204
TaqI TCGA 5 cut(s) 9, 388, 589, 869, 951
TasI AATT 7 cut(s) 218, 362, 459, 478, 621, 681, 926
TfiI GAWTC 4 cut(s) 6, 150, 785, 863
Tru1I TTAA 2 cut(s) 792, 800
Tru9I TTAA 2 cut(s) 792, 800
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 237
TseI GCWGC 1 cut(s) 249
Tsp45I GTSAC 1 cut(s) 237
TspDTI ATGAA 3 cut(s) 282, 452, 855
TspGWI ACGGA 1 cut(s) 500
TspRI CASTG 1 cut(s) 289
Tth111I GACNNNGTC 1 cut(s) 563
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 4 cut(s) 218, 362, 459, 926
XceI RCATGY 1 cut(s) 799
XmiI GTMKAC 1 cut(s) 975
XspI CTAG 3 cut(s) 336, 756, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.