Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035524.1

Orthogroup ID

OG0011122

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 656

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035524.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 563 bp

gttctggcgagttgcctgtagaggtagctgttcctcgtagacatctcaatacttcaaactcaagtaatgaggtagaaaccgagtcaaatgctatggactcaaaggaaaggtcaaacaacattggaagcagccattcagaagattttcgtggatctttcaatggtaaataccgtaatattgagagaggaattgctggtctgtattctaaacaaagagatcatgatgacttggcacgggataaatggccagaagaaagaatgaacggaaaagactcgagaatgagagcagtggatgttgatgataggactgatattaatcaaagggagtcatccagcagtcgtgcagggttctctaaaactgatggtcaatctgacggatcctttgccaatagcaaaggaaattggttggctatccaaaggcagttgttacagctggagagacaacaagctcatttgatgagcatgctgcaggatttcatgggggggtctcatgacaccatggtaactttggagaacagggtaaggggccttgagagaattgtggaagacatggcacgggattta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0010031 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0030863 GO:0030981 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050879 GO:0055028 GO:0060560 GO:0071840 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

21.19

Weight (kDa)

5.59

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27060
fragaria_vesca	FvH4_3g22240
malus_domestica	MD03G1206600.v1.1 MD11G1222000.v1.1
prunus_persica	Prupe.4G209400_v2.0.a1 Prupe.4G209400_v2.0.a1
pyrus_communis	pycom03g15640 pycom11g19580
rosa_chinensis	RchiOBHm_Chr5g0038291
rosa_laevigata	RLG00000033844
rosa_multiflora	Rmu_sc0000764.1_g000003 Rmu_sc0003858.1_g000004 Rmu_sc0035524.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042730
rosa_rugosa	Rorug05G0171800
rosa_samantha	Rh5AG259100 Rh5BG262900 Rh5CG295300 Rh5DG271900
rosa_wichuraiana	Rw5G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AclWI	GGATC	3 cut(s)	159, 371, 384
AcoI	YGGCCR	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	56, 159
AluBI	AGCT	3 cut(s)	28, 432, 448
AluI	AGCT	3 cut(s)	28, 432, 448
Alw26I	GTCTC	2 cut(s)	432, 491
AlwI	GGATC	3 cut(s)	159, 371, 384
Ama87I	CYCGRG	1 cut(s)	273
AoxI	GGCC	2 cut(s)	244, 525
ApeKI	GCWGC	2 cut(s)	128, 465
ArsI	GACNNNNNNTTYG	4 cut(s)	94, 126, 364, 396
AseI	ATTAAT	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	525
AvaI	CYCGRG	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	246
BamHI	GGATCC	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	140, 452
BccI	CCATC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BcoDI	GTCTC	2 cut(s)	432, 491
BfmI	CTRYAG	2 cut(s)	17, 466
BisI	GCNGC	2 cut(s)	129, 466
BlsI	GCNGC	2 cut(s)	130, 467
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	525
BmiI	GGNNCC	2 cut(s)	378, 526
BpiI	GAAGAC	1 cut(s)	551
BpmI	CTGGAG	1 cut(s)	454
BpuEI	CTTGAG	2 cut(s)	45, 550
BsaBI	GATNNNNATC	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	1 cut(s)	497
Bse8I	GATNNNNATC	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	497
BseGI	GGATG	2 cut(s)	297, 328
BseJI	GATNNNNATC	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	140, 452
BsgI	GTGCAG	1 cut(s)	362
BshFI	GGCC	2 cut(s)	246, 527
BsiHKCI	CYCGRG	1 cut(s)	273
BsmAI	GTCTC	2 cut(s)	432, 491
BsnI	GGCC	2 cut(s)	246, 527
Bso31I	GGTCTC	1 cut(s)	491
BsoBI	CYCGRG	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	151, 216, 376
Bsp19I	CCATGG	1 cut(s)	497
BspANI	GGCC	2 cut(s)	246, 527
BspHI	TCATGA	2 cut(s)	219, 489
BspLI	GGNNCC	2 cut(s)	378, 526
BspMAI	CTGCAG	1 cut(s)	470
BspPI	GGATC	3 cut(s)	159, 371, 384
BspTNI	GGTCTC	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	497
BssMI	GATC	3 cut(s)	151, 216, 376
BssT1I	CCWWGG	1 cut(s)	497
Bst4CI	ACNGT	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	463
BstDSI	CCRYGG	1 cut(s)	497
BstF5I	GGATG	2 cut(s)	297, 328
BstKTI	GATC	3 cut(s)	154, 219, 379
BstMAI	GTCTC	2 cut(s)	432, 491
BstMBI	GATC	3 cut(s)	151, 216, 376
BstNSI	RCATGY	1 cut(s)	465
BstSFI	CTRYAG	2 cut(s)	17, 466
BstV1I	GCAGC	2 cut(s)	140, 452
BstV2I	GAAGAC	1 cut(s)	551
BstX2I	RGATCY	2 cut(s)	151, 376
BstYI	RGATCY	2 cut(s)	151, 376
BsuRI	GGCC	2 cut(s)	246, 527
BtgI	CCRYGG	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	297, 328
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	463
CciI	TCATGA	2 cut(s)	219, 489
Cfr13I	GGNCC	1 cut(s)	525
CviAII	CATG	6 cut(s)	220, 462, 477, 490, 498, 549
CviJI	RGCY	7 cut(s)	28, 131, 246, 409, 432, 448, 527
CviKI_1	RGCY	7 cut(s)	28, 131, 246, 409, 432, 448, 527
DpnI	GATC	3 cut(s)	153, 218, 378
DpnII	GATC	3 cut(s)	151, 216, 376
EaeI	YGGCCR	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	497
Eco31I	GGTCTC	1 cut(s)	491
Eco88I	CYCGRG	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	525
EcoT14I	CCWWGG	1 cut(s)	497
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	6 cut(s)	223, 465, 480, 493, 501, 552
FaiI	YATR	7 cut(s)	94, 221, 463, 478, 491, 499, 550
FatI	CATG	6 cut(s)	219, 461, 476, 489, 497, 548
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	129, 466
FokI	GGATG	2 cut(s)	304, 315
Fsp4HI	GCNGC	2 cut(s)	129, 466
GluI	GCNGC	2 cut(s)	129, 466
GsuI	CTGGAG	1 cut(s)	454
HaeIII	GGCC	2 cut(s)	246, 527
Hin1II	CATG	6 cut(s)	223, 465, 480, 493, 501, 552
HinfI	GANTC	4 cut(s)	82, 97, 271, 325
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	2 cut(s)	138, 372
Hpy188III	TCNNGA	3 cut(s)	220, 275, 490
Hpy8I	GTNNAC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	2 cut(s)	343, 468
Hsp92II	CATG	6 cut(s)	223, 465, 480, 493, 501, 552
Kzo9I	GATC	3 cut(s)	151, 216, 376
LpnPI	CCDG	8 cut(s)	29, 179, 260, 329, 345, 418, 454, 501
Lsp1109I	GCAGC	2 cut(s)	140, 452
MaeIII	GTNAC	2 cut(s)	425, 501
MalI	GATC	3 cut(s)	153, 218, 378
MboI	GATC	3 cut(s)	151, 216, 376
MboII	GAAGA	3 cut(s)	151, 262, 556
MflI	RGATCY	2 cut(s)	151, 376
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	3 cut(s)	188, 399, 536
MluNI	TGGCCA	1 cut(s)	246
MlyI	GAGTC	4 cut(s)	91, 91, 265, 334
MnlI	CCTC	4 cut(s)	15, 44, 63, 178
Mox20I	TGGCCA	1 cut(s)	246
MroXI	GAANNNNTTC	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	246
MseI	TTAA	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	432
NcoI	CCATGG	1 cut(s)	497
NdeII	GATC	3 cut(s)	151, 216, 376
NlaIII	CATG	6 cut(s)	223, 465, 480, 493, 501, 552
NlaIV	GGNNCC	2 cut(s)	378, 526
NspI	RCATGY	1 cut(s)	465
PaeI	GCATGC	1 cut(s)	465
PaeR7I	CTCGAG	1 cut(s)	273
PagI	TCATGA	2 cut(s)	219, 489
PdmI	GAANNNNTTC	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	130, 467
PleI	GAGTC	4 cut(s)	90, 91, 265, 333
PpsI	GAGTC	4 cut(s)	90, 91, 265, 333
PshBI	ATTAAT	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	378, 526
PspPI	GGNCC	1 cut(s)	525
PstI	CTGCAG	1 cut(s)	470
PsuI	RGATCY	2 cut(s)	151, 376
PvuII	CAGCTG	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	2 cut(s)	129, 466
Sau3AI	GATC	3 cut(s)	151, 216, 376
Sau96I	GGNCC	1 cut(s)	525
SchI	GAGTC	4 cut(s)	91, 91, 265, 334
SetI	ASST	6 cut(s)	26, 30, 74, 112, 434, 450
SfcI	CTRYAG	2 cut(s)	17, 466
Sfr274I	CTCGAG	1 cut(s)	273
SlaI	CTCGAG	1 cut(s)	273
SmlI	CTYRAG	3 cut(s)	60, 273, 529
SmoI	CTYRAG	3 cut(s)	60, 273, 529
SphI	GCATGC	1 cut(s)	465
Sse9I	AATT	3 cut(s)	188, 399, 536
SspI	AATATT	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	497
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	274
TasI	AATT	3 cut(s)	188, 399, 536
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	293
TseI	GCWGC	2 cut(s)	128, 465
TspDTI	ATGAA	2 cut(s)	274, 465
TspGWI	ACGGA	2 cut(s)	278, 389
TspRI	CASTG	1 cut(s)	293
VspI	ATTAAT	1 cut(s)	314
XceI	RCATGY	1 cut(s)	465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	504
XhoI	CTCGAG	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.