Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011122

Physical Location & Seq

Genomic Coordinates Forward (+)

32912293 .. 32916692

Gene Structure 4400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG262900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2616 bp

ATGAGTTTCGCAGGACCCAGAATCTCAAAACCCACAAAACCCCCAAACTCCACACCCCCACAAAACCAGCTCACCCCATCTTCAAGGTCTTCTTCCTCTTCCCTCTCCTCCCACCTCGCCATGGTGGAACTCAAGCAGAGGATCCTCACCTCCCTCTCCAAACTCTCCGACCGCGACACCTACCAAATCGCCGTCGAAGATCTCGAGAAAATCATCCAGACCCTCGCCGCCGACGGCCTCCCGGTGCTCCTCAACTGCCTCTACGACGCCTCCGCCGACCCCAAACCCGCCGTCAAGAAAGAGTCTCTACGCCTCCTCGCATTGCTCTCCTCCTCCCACCCCGATTTCACGTCCACCCACCTCACAAAGATCATCTCCCACATCGTCAAACGCCTCAAGGACGCCGACTCCGGCGTCAGGGACGCGTGTCGCGACGCCATTGGGGCGCTGGCGGCGCAGTACTTGAAGGGGGAGAGCGGCGACCACAATGTTGGGTCGGCGGTGGTGGGGTTGTTTGTGAAGCCGTTGTTTGAGGCCATGGGGGAGCAGAACAAAGGGGTGCAATCCGGTGCGGCCGTTTGTATGGCTAAGATTGTGGACTCGGCTTCGGACCCTCCTGTCCCTGCTTTTCAGAAGCTCTGTCCCAGGATCTGTAAGCTGCTTAACAATCCTAACTTCCTGGCTAAGGCTTCGCTGTTGCCCGTGGTTTCGAGCTTGTCTCAGGTTGGAGCGGTAGCACCGCAAAGCTTGGATAATTTGCTGCCAACCGTACATGACTGTCTTGGAAGTCCAGATTGGGCAACGCGTAAAGCAGCAGCTGATGTGCTCATTGCACTAGCATTGCATTCGAGTAACTTGATCACAGATAGAGCTGCTTCCACGGTCACTGTGCTTGAGTCTTGCCGGTTTGACAAGATAAAACCCGTCAGAGATAGCATGACAGAAGCATTGCAGTTTTGGAAAAAGATTGCGGGGGGAGATGACTCTCCAAAAGAGCAGAAAACCCCATCTCATGGAAATCCTGAATCAGCTGAGGTTTCAGAAAGGAATGAGCCAAAAGTTTCAAAGCCTAGTGAGAAAACAGAACAAGCAGCAAAGGTTGCATCTAATGGTTCTTCCCCTACTTCAGATTCTGTTTCTAAAGCCAAAGGTAGTACTATTCCAGATAAAGCTGTTGGACTTCTGAAGAAGAAACCGCCTGTCTTGACTGACAAAGAGCTAAACCCAGAATTCTTCCAGAAACTTGAAAGGGGTTCTGGCGAGTTGCCTGTAGAGGTTGCTGTTCCTCGTAGACATCTCAATACTTCAAACTCAAGTAATGAGGTAGAAACCGAGTCAAATGCTATGGACTCAAAGGAAAGGTCAAACAACATTGGAAGCAGCCATTCAGAAGATTTTCGTGGATCTTTCAATAGTAAATACCGTAATATTGAGAGAGGAATTGCTGGTCTGTATTCTAAACAAAGAGATCATGATGACTTGGCACGGGATAAATGGCCAGAAGAAAGAATGAACGGAAAAGACTCGAGAATGAGAGCAGTGGATGTTGATGATAGGACTGATATTAATCAAAGGGAGTCATCCAGCAGTCGTGCAGGGTTCTCTAAAACTGATGGTCAATCTGACGGATCCTTCGCCAATAGCAAAGGAAATTGGTTGGCTATCCAAAGGCAGTTGTTACAGCTGGAGAGACAACAAGCTCATTTGATGAGCATGCTGCAGGATTTCATGGGCGGGTCTCATGACACCATGGTAACTTTGGAGAACAGGGTAAGGGGCCTTGAGAGAATTGTGGAAGACATGGCACGGGATTTATCAATATCTTCAGGTAGGAGAGGTGGTAATTTTGCGATGGGGTTTGAGGGATCTAATCGACAACTAGGCAAGTATAATGGTTTCCCTGACTATGCGAGTGCCAAATTTGGAAGAGGTGGTGATGGACGAATTCCGTTTGGGGAAAGATATTCTCAAACTGATGGAATTGTTTCGGACATGAGGGGAAGGGGCCCTTCTTGGAGATCTGACATGTCCGAGGTGTGGGATTTTTCTACATATGGTGGTTCTAGAAATGGGCAGAGGAAGGCTGTTGGTGGTGGTCCCATGGATGGTAGGTCACCCAAGTCGGAAAATGGAAGTGATCATGGTGGCAGCAGGCGGGCATGGGAGAAAGGGAGTGGACTTCTCAGGTTTGGTGAGGGGCCTTCCGCAAGAAGTGTTTGGCAAGCATCGAAAGATGAAGCTACCTTGGAAGCAATTCGTGTGGCTGGAGAGGATAATGGACCATCAAGAACAGCAAGAGTAGCTATGCCTGAATTGACTGCAGAGGCTTTGGGAGATGATAGTGTTGGCCAAGATCGGGATCCAATCTGGACTTCTTGGACTAATGCAATGGATGCTTTTCAAGTGGGTGATATGGATACAGCCTATGCGGAAGTATTGTCTACAGGAGATGATCACTTGCTTGTAAAACTAATGGATAGATCAGGTCCTGTGATTGACCAACTTTCAAATGAAACAGCAACCGAGGTCTTGCATGCGGTTGGACAGTTTTTACCAGAGCAAAACTTGTTTGACGTCTGCCTGTCTTGGATTCAGCAGGTATCTGAGTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0010031 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0030863 GO:0030981 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050879 GO:0055028 GO:0060560 GO:0071840 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

871

Amino Acids

94.42

Weight (kDa)

6.13

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOR1L1_N	PF24714	42 - 322	4.9e-123	TORTIFOLIA1 N-terminal
TOR1L1_C	PF24713	789 - 869	8.3e-41	TORTIFOLIA1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27060
fragaria_vesca	FvH4_3g22240
malus_domestica	MD03G1206600.v1.1 MD11G1222000.v1.1
prunus_persica	Prupe.4G209400_v2.0.a1 Prupe.4G209400_v2.0.a1
pyrus_communis	pycom03g15640 pycom11g19580
rosa_chinensis	RchiOBHm_Chr5g0038291
rosa_laevigata	RLG00000033844
rosa_multiflora	Rmu_sc0000764.1_g000003 Rmu_sc0003858.1_g000004 Rmu_sc0035524.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042730
rosa_rugosa	Rorug05G0171800
rosa_samantha	Rh5AG259100 Rh5BG262900 Rh5CG295300 Rh5DG271900
rosa_wichuraiana	Rw5G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	413, 617
AatII	GACGTC	1 cut(s)	2577
Acc36I	ACCTGC	1 cut(s)	2587
AccB7I	CCANNNNNTGG	1 cut(s)	1013
AccBSI	CCGCTC	2 cut(s)	477, 731
AccI	GTMKAC	2 cut(s)	1291, 2441
AccII	CGCG	4 cut(s)	174, 425, 432, 805
AclWI	GGATC	9 cut(s)	136, 149, 656, 1411, 1623, 1636, 1873, 2354, 2367
AcoI	YGGCCR	3 cut(s)	573, 1496, 2347
AcsI	RAATTY	3 cut(s)	1229, 1919, 1944
AcuI	CTGAAG	3 cut(s)	1110, 1205, 1809
AcyI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2574
AfaI	GTAC	3 cut(s)	461, 771, 1156
AfiI	CCNNNNNNNGG	7 cut(s)	121, 417, 685, 1013, 2037, 2105, 2356
AflIII	ACRYGT	3 cut(s)	423, 803, 2025
AgsI	TTSAA	8 cut(s)	84, 466, 1065, 1247, 1308, 1411, 2402, 2508
AjiI	CACGTC	1 cut(s)	351
AjnI	CCWGG	2 cut(s)	644, 678
AjuI	GAANNNNNNNTTGG	4 cut(s)	778, 810, 2356, 2388
Alw21I	GWGCWC	2 cut(s)	249, 828
Alw26I	GTCTC	4 cut(s)	309, 723, 1684, 1743
AlwI	GGATC	9 cut(s)	136, 149, 656, 1411, 1623, 1636, 1873, 2354, 2367
AlwNI	CAGNNNCTG	4 cut(s)	651, 818, 1133, 2489
Ama87I	CYCGRG	2 cut(s)	203, 1525
AoxI	GGCC	8 cut(s)	235, 534, 573, 1496, 1777, 2005, 2198, 2347
ApaI	GGGCCC	1 cut(s)	2009
ApeKI	GCWGC	9 cut(s)	658, 760, 812, 815, 872, 1091, 1380, 1717, 2148
ApoI	RAATTY	3 cut(s)	1229, 1919, 1944
ArsI	GACNNNNNNTTYG	6 cut(s)	276, 308, 1346, 1378, 1616, 1648
AseI	ATTAAT	1 cut(s)	1566
Asp700I	GAANNNNTTC	3 cut(s)	1395, 1984, 2253
AspLEI	GCGC	2 cut(s)	448, 457
AspS9I	GGNCC	9 cut(s)	14, 610, 1777, 2005, 2006, 2096, 2198, 2279, 2486
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	6 cut(s)	64, 139, 1946, 2106, 2204, 2420
AvaI	CYCGRG	2 cut(s)	203, 1525
AvaII	GGWCC	5 cut(s)	14, 610, 2096, 2279, 2486
BaeGI	GKGCMC	1 cut(s)	2009
BalI	TGGCCA	2 cut(s)	1498, 2349
BamHI	GGATCC	3 cut(s)	141, 1628, 2359
BanII	GRGCYC	1 cut(s)	2009
BbsI	GAAGAC	3 cut(s)	81, 1803, 2601
Bbv12I	GWGCWC	2 cut(s)	249, 828
BbvCI	CCTCAGC	1 cut(s)	1032
BbvI	GCAGC	9 cut(s)	645, 747, 824, 827, 859, 1103, 1392, 1704, 2160
BccI	CCATC	8 cut(s)	85, 1015, 1607, 1846, 1931, 1970, 2099, 2290
BceAI	ACGGC	5 cut(s)	176, 250, 275, 508, 560
BcgI	CGANNNNNNTGC	4 cut(s)	828, 862, 1322, 1356
BciT130I	CCWGG	2 cut(s)	646, 680
BciVI	GTATCC	1 cut(s)	2410
BclI	TGATCA	3 cut(s)	858, 2137, 2452
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	4 cut(s)	309, 723, 1684, 1743
BfaI	CTAG	4 cut(s)	836, 1071, 1880, 2064
BfmI	CTRYAG	4 cut(s)	1269, 1718, 2319, 2442
BfoI	RGCGCY	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	2587
BfuI	GTATCC	1 cut(s)	2410
BglI	GCCNNNNNGGC	1 cut(s)	443
BglII	AGATCT	2 cut(s)	199, 2018
BmcAI	AGTACT	2 cut(s)	461, 1156
Bme1390I	CCNGG	3 cut(s)	242, 646, 680
Bme18I	GGWCC	5 cut(s)	14, 610, 2096, 2279, 2486
BmeT110I	CYCGRG	2 cut(s)	203, 1525
BmgBI	CACGTC	1 cut(s)	351
BmgT120I	GGNCC	9 cut(s)	14, 610, 1777, 2005, 2006, 2096, 2198, 2279, 2486
BmrFI	CCNGG	3 cut(s)	242, 646, 680
BmsI	GCATC	3 cut(s)	1112, 2234, 2383
BoxI	GACNNNNGTC	1 cut(s)	426
BpiI	GAAGAC	3 cut(s)	81, 1803, 2601
BplI	GAGNNNNNCTC	2 cut(s)	703, 735
BpmI	CTGGAG	2 cut(s)	1706, 2286
Bpu10I	CCTNAGC	2 cut(s)	684, 1032
BpuEI	CTTGAG	5 cut(s)	116, 380, 914, 1297, 1802
BpuMI	CCSGG	1 cut(s)	242
BsaBI	GATNNNNATC	2 cut(s)	1566, 2358
BsaHI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2574
BsaI	GGTCTC	1 cut(s)	1743
BsaWI	WCCGGW	1 cut(s)	566
BsaXI	ACNNNNNCTCC	6 cut(s)	254, 284, 392, 422, 1825, 1855
Bsc4I	CCNNNNNNNGG	7 cut(s)	121, 417, 685, 1013, 2037, 2105, 2356
Bse118I	RCCGGY	1 cut(s)	903
Bse3DI	GCAATG	5 cut(s)	320, 828, 839, 947, 2394
Bse8I	GATNNNNATC	2 cut(s)	1566, 2358
BseBI	CCWGG	2 cut(s)	646, 680
BseGI	GGATG	5 cut(s)	213, 1549, 1580, 2110, 2398
BseJI	GATNNNNATC	2 cut(s)	1566, 2358
BseLI	CCNNNNNNNGG	7 cut(s)	121, 417, 685, 1013, 2037, 2105, 2356
BseMI	GCAATG	5 cut(s)	320, 828, 839, 947, 2394
BseMII	CTCAG	4 cut(s)	734, 1023, 2197, 2595
BseRI	GAGGAG	5 cut(s)	97, 239, 305, 319, 322
BseSI	GKGCMC	1 cut(s)	2009
BseX3I	CGGCCG	1 cut(s)	573
BseXI	GCAGC	9 cut(s)	645, 747, 824, 827, 859, 1103, 1392, 1704, 2160
BsgI	GTGCAG	1 cut(s)	1614
Bsh1236I	CGCG	4 cut(s)	174, 425, 432, 805
Bsh1285I	CGRYCG	2 cut(s)	172, 576
BshFI	GGCC	8 cut(s)	237, 536, 575, 1498, 1779, 2007, 2200, 2349
BsiEI	CGRYCG	2 cut(s)	172, 576
BsiHKAI	GWGCWC	2 cut(s)	249, 828
BsiHKCI	CYCGRG	2 cut(s)	203, 1525
BsiSI	CCGG	4 cut(s)	242, 411, 567, 904
BslFI	GGGAC	4 cut(s)	434, 605, 627, 2082
BslI	CCNNNNNNNGG	7 cut(s)	121, 417, 685, 1013, 2037, 2105, 2356
BsmAI	GTCTC	4 cut(s)	309, 723, 1684, 1743
BsmFI	GGGAC	4 cut(s)	434, 605, 627, 2082
BsmI	GAATGC	1 cut(s)	844
BsnI	GGCC	8 cut(s)	237, 536, 575, 1498, 1779, 2007, 2200, 2349
Bso31I	GGTCTC	1 cut(s)	1743
BsoBI	CYCGRG	2 cut(s)	203, 1525
Bsp120I	GGGCCC	1 cut(s)	2005
Bsp1286I	GDGCHC	3 cut(s)	249, 828, 2009
Bsp19I	CCATGG	4 cut(s)	120, 537, 1749, 2100
Bsp68I	TCGCGA	1 cut(s)	432
BspANI	GGCC	8 cut(s)	237, 536, 575, 1498, 1779, 2007, 2200, 2349
BspCNI	CTCAG	4 cut(s)	733, 1024, 2196, 2596
BspFNI	CGCG	4 cut(s)	174, 425, 432, 805
BspHI	TCATGA	2 cut(s)	1471, 1741
BspMAI	CTGCAG	2 cut(s)	1722, 2323
BspMI	ACCTGC	1 cut(s)	2587
BspPI	GGATC	9 cut(s)	136, 149, 656, 1411, 1623, 1636, 1873, 2354, 2367
BspTNI	GGTCTC	1 cut(s)	1743
BsrBI	CCGCTC	2 cut(s)	477, 731
BsrDI	GCAATG	5 cut(s)	320, 828, 839, 947, 2394
BsrFI	RCCGGY	1 cut(s)	903
BssAI	RCCGGY	1 cut(s)	903
BssNI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2574
BssT1I	CCWWGG	5 cut(s)	120, 537, 1749, 2100, 2244
Bst2UI	CCWGG	2 cut(s)	646, 680
Bst4CI	ACNGT	6 cut(s)	769, 779, 883, 889, 1424, 2547
Bst6I	CTCTTC	2 cut(s)	103, 1921
BstACI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2574
BstAPI	GCANNNNNTGC	2 cut(s)	1100, 2393
BstC8I	GCNNGC	6 cut(s)	450, 1715, 2153, 2157, 2223, 2535
BstDEI	CTNAG	6 cut(s)	588, 684, 720, 1032, 2183, 2604
BstDSI	CCRYGG	6 cut(s)	120, 537, 702, 879, 1749, 2100
BstEII	GGTNACC	1 cut(s)	2112
BstENI	CCTNNNNNAGG	1 cut(s)	683
BstF5I	GGATG	5 cut(s)	213, 1549, 1580, 2110, 2398
BstFNI	CGCG	4 cut(s)	174, 425, 432, 805
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	2 cut(s)	448, 457
BstMAI	GTCTC	4 cut(s)	309, 723, 1684, 1743
BstMCI	CGRYCG	2 cut(s)	172, 576
BstMWI	GCNNNNNNNGC	6 cut(s)	443, 452, 454, 1100, 2300, 2393
BstNI	CCWGG	2 cut(s)	646, 680
BstNSI	RCATGY	3 cut(s)	1717, 2029, 2537
BstPAI	GACNNNNGTC	1 cut(s)	426
BstPI	GGTNACC	1 cut(s)	2112
BstSCI	CCNGG	3 cut(s)	240, 644, 678
BstSFI	CTRYAG	4 cut(s)	1269, 1718, 2319, 2442
BstSLI	GKGCMC	1 cut(s)	2009
BstUI	CGCG	4 cut(s)	174, 425, 432, 805
BstV1I	GCAGC	9 cut(s)	645, 747, 824, 827, 859, 1103, 1392, 1704, 2160
BstV2I	GAAGAC	3 cut(s)	81, 1803, 2601
BstX2I	RGATCY	8 cut(s)	141, 199, 648, 1403, 1628, 1865, 2018, 2359
BstXI	CCANNNNNNTGG	1 cut(s)	491
BstYI	RGATCY	8 cut(s)	141, 199, 648, 1403, 1628, 1865, 2018, 2359
BstZI	CGGCCG	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	2410
BsuRI	GGCC	8 cut(s)	237, 536, 575, 1498, 1779, 2007, 2200, 2349
BtgI	CCRYGG	6 cut(s)	120, 537, 702, 879, 1749, 2100
BtgZI	GCGATG	1 cut(s)	1865
BtrI	CACGTC	1 cut(s)	351
BtsCI	GGATG	5 cut(s)	213, 1549, 1580, 2110, 2398
BtsI	GCAGTG	1 cut(s)	1545
BtsIMutI	CAGTG	2 cut(s)	885, 1545
BtuMI	TCGCGA	1 cut(s)	432
BveI	ACCTGC	1 cut(s)	2587
Cac8I	GCNNGC	6 cut(s)	450, 1715, 2153, 2157, 2223, 2535
CaiI	CAGNNNCTG	4 cut(s)	651, 818, 1133, 2489
CciI	TCATGA	2 cut(s)	1471, 1741
CfoI	GCGC	2 cut(s)	448, 457
Cfr10I	RCCGGY	1 cut(s)	903
Cfr13I	GGNCC	9 cut(s)	14, 610, 1777, 2005, 2006, 2096, 2198, 2279, 2486
CseI	GACGC	5 cut(s)	275, 403, 410, 431, 443
Csp6I	GTAC	3 cut(s)	460, 770, 1155
CspCI	CAANNNNNGTGG	2 cut(s)	2241, 2276
CviQI	GTAC	3 cut(s)	460, 770, 1155
DdeI	CTNAG	6 cut(s)	588, 684, 720, 1032, 2183, 2604
DrdI	GACNNNNNNGTC	2 cut(s)	413, 617
DseDI	GACNNNNNNGTC	2 cut(s)	413, 617
EaeI	YGGCCR	3 cut(s)	573, 1496, 2347
EagI	CGGCCG	1 cut(s)	573
Eam1104I	CTCTTC	2 cut(s)	103, 1921
EarI	CTCTTC	2 cut(s)	103, 1921
EciI	GGCGGA	1 cut(s)	262
EclXI	CGGCCG	1 cut(s)	573
Eco130I	CCWWGG	5 cut(s)	120, 537, 1749, 2100, 2244
Eco24I	GRGCYC	1 cut(s)	2009
Eco31I	GGTCTC	1 cut(s)	1743
Eco47I	GGWCC	5 cut(s)	14, 610, 2096, 2279, 2486
Eco52I	CGGCCG	1 cut(s)	573
Eco57I	CTGAAG	3 cut(s)	1110, 1205, 1809
Eco88I	CYCGRG	2 cut(s)	203, 1525
Eco91I	GGTNACC	1 cut(s)	2112
EcoNI	CCTNNNNNAGG	1 cut(s)	683
EcoO109I	RGGNCCY	6 cut(s)	14, 1777, 2005, 2006, 2198, 2486
EcoO65I	GGTNACC	1 cut(s)	2112
EcoRI	GAATTC	2 cut(s)	1229, 1944
EcoRII	CCWGG	2 cut(s)	644, 678
EcoT14I	CCWWGG	5 cut(s)	120, 537, 1749, 2100, 2244
EcoT38I	GRGCYC	1 cut(s)	2009
ErhI	CCWWGG	5 cut(s)	120, 537, 1749, 2100, 2244
FalI	AAGNNNNNCTT	4 cut(s)	76, 108, 1993, 2025
FaqI	GGGAC	4 cut(s)	434, 605, 627, 2082
FauI	CCCGC	4 cut(s)	295, 964, 1727, 2148
FauNDI	CATATG	1 cut(s)	2053
FbaI	TGATCA	3 cut(s)	858, 2137, 2452
FblI	GTMKAC	2 cut(s)	1291, 2441
FokI	GGATG	5 cut(s)	200, 1556, 1567, 2117, 2405
FriOI	GRGCYC	1 cut(s)	2009
FspBI	CTAG	4 cut(s)	836, 1071, 1880, 2064
GlaI	GCGC	2 cut(s)	447, 456
GsuI	CTGGAG	2 cut(s)	1706, 2286
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	8 cut(s)	237, 536, 575, 1498, 1779, 2007, 2200, 2349
HapII	CCGG	4 cut(s)	242, 411, 567, 904
HgaI	GACGC	5 cut(s)	275, 403, 410, 431, 443
HhaI	GCGC	2 cut(s)	448, 457
Hin1I	GRCGYC	5 cut(s)	267, 402, 414, 435, 2574
Hin6I	GCGC	2 cut(s)	446, 455
HinP1I	GCGC	2 cut(s)	446, 455
HindIII	AAGCTT	1 cut(s)	745
HpaII	CCGG	4 cut(s)	242, 411, 567, 904
HphI	GGTGA	6 cut(s)	64, 139, 1946, 2106, 2204, 2420
Hpy166II	GTNNAC	5 cut(s)	354, 598, 1292, 2177, 2442
Hpy8I	GTNNAC	5 cut(s)	354, 598, 1292, 2177, 2442
Hpy99I	CGWCG	4 cut(s)	197, 236, 269, 437
HpyAV	CCTTC	6 cut(s)	460, 1642, 1995, 2019, 2074, 2211
HpyCH4III	ACNGT	6 cut(s)	769, 779, 883, 889, 1424, 2547
HpyCH4IV	ACGT	2 cut(s)	350, 2574
HpyF10VI	GCNNNNNNNGC	6 cut(s)	443, 452, 454, 1100, 2300, 2393
HpyF3I	CTNAG	6 cut(s)	588, 684, 720, 1032, 2183, 2604
HpySE526I	ACGT	2 cut(s)	350, 2574
Hsp92I	GRCGYC	5 cut(s)	267, 402, 414, 435, 2574
HspAI	GCGC	2 cut(s)	446, 455
Ksp22I	TGATCA	3 cut(s)	858, 2137, 2452
LmnI	GCTCC	3 cut(s)	252, 544, 728
Lsp1109I	GCAGC	9 cut(s)	645, 747, 824, 827, 859, 1103, 1392, 1704, 2160
LweI	GCATC	3 cut(s)	1112, 2234, 2383
MaeI	CTAG	4 cut(s)	836, 1071, 1880, 2064
MaeII	ACGT	2 cut(s)	350, 2574
MaeIII	GTNAC	5 cut(s)	851, 883, 1677, 1753, 2112
MbiI	CCGCTC	2 cut(s)	477, 731
MflI	RGATCY	8 cut(s)	141, 199, 648, 1403, 1628, 1865, 2018, 2359
MhlI	GDGCHC	3 cut(s)	249, 828, 2009
MlsI	TGGCCA	2 cut(s)	1498, 2349
MluI	ACGCGT	2 cut(s)	423, 803
MluNI	TGGCCA	2 cut(s)	1498, 2349
MmeI	TCCRAC	5 cut(s)	192, 706, 1156, 2103, 2521
Mox20I	TGGCCA	2 cut(s)	1498, 2349
MroXI	GAANNNNTTC	3 cut(s)	1395, 1984, 2253
MscI	TGGCCA	2 cut(s)	1498, 2349
MseI	TTAA	3 cut(s)	663, 1566, 2614
Msp20I	TGGCCA	2 cut(s)	1498, 2349
MspA1I	CMGCKG	3 cut(s)	818, 1031, 1684
MspI	CCGG	4 cut(s)	242, 411, 567, 904
MspR9I	CCNGG	3 cut(s)	242, 646, 680
Mva1269I	GAATGC	1 cut(s)	844
MvaI	CCWGG	2 cut(s)	646, 680
MvnI	CGCG	4 cut(s)	174, 425, 432, 805
MwoI	GCNNNNNNNGC	6 cut(s)	443, 452, 454, 1100, 2300, 2393
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	4 cut(s)	120, 537, 1749, 2100
NdeI	CATATG	1 cut(s)	2053
NmeAIII	GCCGAG	1 cut(s)	581
NmuCI	GTSAC	2 cut(s)	883, 2112
NruI	TCGCGA	1 cut(s)	432
NspI	RCATGY	3 cut(s)	1717, 2029, 2537
PaeI	GCATGC	2 cut(s)	1717, 2537
PaeR7I	CTCGAG	2 cut(s)	203, 1525
PagI	TCATGA	2 cut(s)	1471, 1741
PciI	ACATGT	1 cut(s)	2025
PcsI	WCGNNNNNNNCGW	3 cut(s)	201, 273, 429
PctI	GAATGC	1 cut(s)	844
PdmI	GAANNNNTTC	3 cut(s)	1395, 1984, 2253
PfeI	GAWTC	4 cut(s)	21, 1025, 1130, 2590
PflMI	CCANNNNNTGG	1 cut(s)	1013
PpuMI	RGGWCCY	2 cut(s)	14, 2486
PscI	ACATGT	1 cut(s)	2025
PshAI	GACNNNNGTC	1 cut(s)	426
PshBI	ATTAAT	1 cut(s)	1566
Psp5II	RGGWCCY	2 cut(s)	14, 2486
Psp6I	CCWGG	2 cut(s)	644, 678
PspEI	GGTNACC	1 cut(s)	2112
PspGI	CCWGG	2 cut(s)	644, 678
PspOMI	GGGCCC	1 cut(s)	2005
PspPI	GGNCC	9 cut(s)	14, 610, 1777, 2005, 2006, 2096, 2198, 2279, 2486
PspPPI	RGGWCCY	2 cut(s)	14, 2486
PstI	CTGCAG	2 cut(s)	1722, 2323
PstNI	CAGNNNCTG	4 cut(s)	651, 818, 1133, 2489
PsuI	RGATCY	8 cut(s)	141, 199, 648, 1403, 1628, 1865, 2018, 2359
PvuII	CAGCTG	3 cut(s)	818, 1031, 1684
RruI	TCGCGA	1 cut(s)	432
RsaI	GTAC	3 cut(s)	461, 771, 1156
RsaNI	GTAC	3 cut(s)	460, 770, 1155
SaqAI	TTAA	3 cut(s)	663, 1566, 2614
Sau96I	GGNCC	9 cut(s)	14, 610, 1777, 2005, 2006, 2096, 2198, 2279, 2486
ScaI	AGTACT	2 cut(s)	461, 1156
ScrFI	CCNGG	3 cut(s)	242, 646, 680
SduI	GDGCHC	3 cut(s)	249, 828, 2009
SfaNI	GCATC	3 cut(s)	1112, 2234, 2383
SfcI	CTRYAG	4 cut(s)	1269, 1718, 2319, 2442
Sfr274I	CTCGAG	2 cut(s)	203, 1525
SinI	GGWCC	5 cut(s)	14, 610, 2096, 2279, 2486
SlaI	CTCGAG	2 cut(s)	203, 1525
SmlI	CTYRAG	7 cut(s)	131, 203, 395, 893, 1312, 1525, 1781
SmoI	CTYRAG	7 cut(s)	131, 203, 395, 893, 1312, 1525, 1781
SphI	GCATGC	2 cut(s)	1717, 2537
SspI	AATATT	1 cut(s)	1429
SspMI	CTAG	4 cut(s)	836, 1071, 1880, 2064
StyD4I	CCNGG	3 cut(s)	240, 644, 678
StyI	CCWWGG	5 cut(s)	120, 537, 1749, 2100, 2244
TaaI	ACNGT	6 cut(s)	769, 779, 883, 889, 1424, 2547
TaiI	ACGT	2 cut(s)	353, 2577
TaqI	TCGA	7 cut(s)	195, 204, 710, 848, 1526, 1873, 2228
TatI	WGTACW	2 cut(s)	459, 1154
TauI	GCSGC	4 cut(s)	230, 455, 480, 575
TfiI	GAWTC	4 cut(s)	21, 1025, 1130, 2590
Tru1I	TTAA	3 cut(s)	663, 1566, 2614
Tru9I	TTAA	3 cut(s)	663, 1566, 2614
TscAI	CASTG	2 cut(s)	892, 1545
TseFI	GTSAC	2 cut(s)	883, 2112
TseI	GCWGC	9 cut(s)	658, 760, 812, 815, 872, 1091, 1380, 1717, 2148
Tsp45I	GTSAC	2 cut(s)	883, 2112
TspDTI	ATGAA	4 cut(s)	1526, 1717, 2250, 2526
TspGWI	ACGGA	3 cut(s)	1530, 1641, 1938
TspRI	CASTG	2 cut(s)	892, 1545
Van91I	CCANNNNNTGG	1 cut(s)	1013
VpaK11BI	GGWCC	5 cut(s)	14, 610, 2096, 2279, 2486
VspI	ATTAAT	1 cut(s)	1566
XagI	CCTNNNNNAGG	1 cut(s)	683
XapI	RAATTY	3 cut(s)	1229, 1919, 1944
XbaI	TCTAGA	1 cut(s)	2063
XceI	RCATGY	3 cut(s)	1717, 2029, 2537
XcmI	CCANNNNNNNNNTGG	2 cut(s)	445, 1756
XhoI	CTCGAG	2 cut(s)	203, 1525
XmiI	GTMKAC	2 cut(s)	1291, 2441
XmnI	GAANNNNTTC	3 cut(s)	1395, 1984, 2253
XspI	CTAG	4 cut(s)	836, 1071, 1880, 2064
ZraI	GACGTC	1 cut(s)	2575
ZrmI	AGTACT	2 cut(s)	461, 1156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.