Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011122

Physical Location & Seq

Genomic Coordinates Forward (+)

33085827 .. 33090233

Gene Structure 4407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG271900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2619 bp

ATGAGTTTCGCAGGACCCAGAATCTCAAAACCCACAAAACCCCCAAACTCCACACCCCCACAAAACCAGCTCACCCCATCTTCAAGGTCTTCTTCCTCTTCCCTCTCCTCCCACCTCGCCATGGTGGAACTCAAGCAGAGGATCCTCACCTCCCTCTCCAAACTCTCCGACCGCGACACCTACCAAATCGCCGTCGAAGATCTCGAGAAAATTATCCAGACCCTCGCCGCCGACGGCCTCCCGGTGCTCCTCAACTGCCTCTACGACGCCTCCGCCGACCCCAAACCCGCCGTCAAGAAAGAGTCTCTACGCCTCCTCGCATTGCTCTCCTCCTCCCACCCCGATTTCACGTCCACCCACCTCACAAAGATCATCTCCCACATCGTCAAACGCCTCAAGGACGCCGACTCCGGCGTCAGGGACGCGTGTCGCGACGCCATTGGGGCGCTGGCGGCGCAGTACTTGAAGGGGGAGAGCGGCGACCACAATGTTGGGTCGGCGGTGGTGGGGTTGTTTGTGAAGCCGTTGTTTGAGGCCATGGGGGAGCAGAACAAAGGGGTGCAATCCGGTGCGGCCGTGTGTATGGCTAAGATTGTGGACTCGGCTTCGGACCCTCCTGTCCCTGCTTTTCAGAAGCTCTGTCCCAGGATCTGTAAGCTGCTTAACAATCCTAACTTCCTGGCTAAGGCTTCGCTGTTGCCCGTGGTTTCGAGCTTGTCTCAGGTTGGAGCGGTAGCACCGCAAAGCTTGGATAATTTGCTGCCAACTGTACATGACTGTCTTGGAAGTCCGGATTGGGCAACGCGTAAAGCAGCAGCTGATGTGCTCATTGCACTAGCATTGCATTCGAGTAACTTGATCACAGATAGAGCTGCTTCCACGGTCACTGTGCTTGAGTCTTGCCGGTTTGACAAGATAAAACCCGTCAGAGATAGCATGACAGAAGCATTGCAGTTTTGGAAAAAGATTGCGGGGGGAGATGACTCTCCAAAAGAGCAGAAAACCCCATCTCATGGAAATCCTGAATCAGCTGAGGTTTCAGAAAGGAATGAGCCAAAAGTTTCAAAGCCTAGTGAGAAAACAGAACAAGCAGCAAAGGTTGCATCTAATGGTTCTTCCCCTACTTCAGATTCTGTTTCTAAAGCCAAAGGTAGTAGTACTATTCCAGATAAAGCTGTTGGACTTCTGAAGAAGAAACCGCCTGTCTTGACTGACAAAGAGCTAAACCCAGAATTCTTCCAGAAACTTGAAAGGGGTTCTGGCGAGTTGCCTGTAGAGGTAGCTGTTCCTCGTAGACATCTCAATACTTCAAACTCAAGTAATGAGGTAGAAACCGAGTCAAATGCTATGGACTCAAAGGAAAGGTCAAACAACATTGGAAGCAGCCATTCAGAAGATTTTCGTGGATCTTTCAATAGTAAATACCGTAATATTGAGAGAGGAATTGCTGGTCTGTATTCTAAACAAAGAGATCATGATGACTTGGCACGGGATAAATGGCCAGAAGAAAGAATGAACGGAAAAGACTCGAGAATGAGAGCAGTGGATGTTGATGATAGGACTGATATTAATCAAAGGGAGTCATCCAGCAGTCGTGCAGGGTTCTCTAAAACTGATGGTCAATCTGACGGATCCTTTGCCAATAGCAAAGGAAATTGGTTGGCTATCCAAAGGCAGTTGTTACAGCTGGAGAGACAACAAGCTCATTTGATGAGCATGCTGCAGGATTTCATGGGGGGGTCTCATGACACCATGGTAACTTTGGAGAACAGGGTAAGGGGCCTTGAGAGAATTGTGGAAGACATGGCACGGGATTTATCAATATCTTCAGGTAGGAGAGGTGGTAATTTTGCGATGGGGTTTGAGGGATCTAATCGACAACTAGGCAAGTATAATGGTTTCCCTGACTATGCGAGTGCCAAATTTGGAAGAGGTGGTGATGGACGAATTCCGTTTGGGGAAAGATATTCTCAAACTGATGGAATTGTTTCGGACATGAGGGGAAGGGGCCCTTCTTGGAGATCTGACATGTCCGAGGTGTGGGATTTTTCTACATATGGTGGTTCTAGGAATGGGCAGAGGAAGGCTGTTGGTGGTGGTCCCATGGATGGTAGGTCACCCAAGTCGGAAAATGGAAGTGATCATGGTGGCAGCAGGCGGGCATGGGAGAAAGGGAGTGGACTTCTCAGGTTTGGTGAGGGGCCTTCCGCAAGAAGTGTTTGGCAAGCATCGAAAGATGAAGCTACCTTGGAAGCAATTCGTGTGGCTGGAGAGGATAATGGACCATCAAGAACAGCAAGAGTAGCTATGCCTGAATTGACTGCAGAGGCTTTGGGAGATGATAGTGTTGGCCAAGATCGGGATCCAATCTGGACTTCTTGGACTAATGCAATGGATGCTTTTCAAGTGGGTGATATGGATACAGCCTATGCGGAAGTATTGTCTACAGGAGATGATCACTTGCTTGTAAAACTAATGGATAGATCAGGTCCTGTGATTGACCAACTTTCAAATGAAACAGCAACCGAGGTCTTGCATGCGGTTGGACAGTTTTTACCAGAGCAAAACTTGTTTGACGTCTGCCTGTCTTGGATTCAGCAGGTATCTGAGTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0010031 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0030863 GO:0030981 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050879 GO:0055028 GO:0060560 GO:0071840 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

872

Amino Acids

94.51

Weight (kDa)

6.13

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOR1L1_N	PF24714	42 - 322	4.9e-123	TORTIFOLIA1 N-terminal
TOR1L1_C	PF24713	790 - 870	8.4e-41	TORTIFOLIA1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27060
fragaria_vesca	FvH4_3g22240
malus_domestica	MD03G1206600.v1.1 MD11G1222000.v1.1
prunus_persica	Prupe.4G209400_v2.0.a1 Prupe.4G209400_v2.0.a1
pyrus_communis	pycom03g15640 pycom11g19580
rosa_chinensis	RchiOBHm_Chr5g0038291
rosa_laevigata	RLG00000033844
rosa_multiflora	Rmu_sc0000764.1_g000003 Rmu_sc0003858.1_g000004 Rmu_sc0035524.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042730
rosa_rugosa	Rorug05G0171800
rosa_samantha	Rh5AG259100 Rh5BG262900 Rh5CG295300 Rh5DG271900
rosa_wichuraiana	Rw5G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	413, 617
AatII	GACGTC	1 cut(s)	2580
Acc36I	ACCTGC	1 cut(s)	2590
AccB7I	CCANNNNNTGG	1 cut(s)	1013
AccBSI	CCGCTC	2 cut(s)	477, 731
AccI	GTMKAC	2 cut(s)	1294, 2444
AccII	CGCG	4 cut(s)	174, 425, 432, 805
AccIII	TCCGGA	1 cut(s)	790
AclWI	GGATC	9 cut(s)	136, 149, 656, 1414, 1626, 1639, 1876, 2357, 2370
AcoI	YGGCCR	3 cut(s)	573, 1499, 2350
AcsI	RAATTY	3 cut(s)	1232, 1922, 1947
AcuI	CTGAAG	3 cut(s)	1110, 1208, 1812
AcyI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2577
AfaI	GTAC	3 cut(s)	461, 771, 1159
AfiI	CCNNNNNNNGG	7 cut(s)	121, 417, 685, 1013, 2040, 2108, 2359
AflIII	ACRYGT	3 cut(s)	423, 803, 2028
AgsI	TTSAA	8 cut(s)	84, 466, 1065, 1250, 1311, 1414, 2405, 2511
AjiI	CACGTC	1 cut(s)	351
AjnI	CCWGG	2 cut(s)	644, 678
AjuI	GAANNNNNNNTTGG	4 cut(s)	778, 810, 2359, 2391
Alw21I	GWGCWC	2 cut(s)	249, 828
Alw26I	GTCTC	4 cut(s)	309, 723, 1687, 1746
AlwI	GGATC	9 cut(s)	136, 149, 656, 1414, 1626, 1639, 1876, 2357, 2370
AlwNI	CAGNNNCTG	4 cut(s)	651, 818, 1133, 2492
Ama87I	CYCGRG	2 cut(s)	203, 1528
Aor13HI	TCCGGA	1 cut(s)	790
AoxI	GGCC	8 cut(s)	235, 534, 573, 1499, 1780, 2008, 2201, 2350
ApaI	GGGCCC	1 cut(s)	2012
ApeKI	GCWGC	9 cut(s)	658, 760, 812, 815, 872, 1091, 1383, 1720, 2151
ApoI	RAATTY	3 cut(s)	1232, 1922, 1947
ArsI	GACNNNNNNTTYG	6 cut(s)	276, 308, 1349, 1381, 1619, 1651
AseI	ATTAAT	1 cut(s)	1569
Asp700I	GAANNNNTTC	3 cut(s)	1398, 1987, 2256
AspLEI	GCGC	2 cut(s)	448, 457
AspS9I	GGNCC	9 cut(s)	14, 610, 1780, 2008, 2009, 2099, 2201, 2282, 2489
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	6 cut(s)	64, 139, 1949, 2109, 2207, 2423
AvaI	CYCGRG	2 cut(s)	203, 1528
AvaII	GGWCC	5 cut(s)	14, 610, 2099, 2282, 2489
BaeGI	GKGCMC	1 cut(s)	2012
BalI	TGGCCA	2 cut(s)	1501, 2352
BamHI	GGATCC	3 cut(s)	141, 1631, 2362
BanII	GRGCYC	1 cut(s)	2012
BbsI	GAAGAC	3 cut(s)	81, 1806, 2604
Bbv12I	GWGCWC	2 cut(s)	249, 828
BbvCI	CCTCAGC	1 cut(s)	1032
BbvI	GCAGC	9 cut(s)	645, 747, 824, 827, 859, 1103, 1395, 1707, 2163
BccI	CCATC	8 cut(s)	85, 1015, 1610, 1849, 1934, 1973, 2102, 2293
BceAI	ACGGC	5 cut(s)	176, 250, 275, 508, 560
BcgI	CGANNNNNNTGC	4 cut(s)	828, 862, 1325, 1359
BciT130I	CCWGG	2 cut(s)	646, 680
BciVI	GTATCC	1 cut(s)	2413
BclI	TGATCA	3 cut(s)	858, 2140, 2455
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	4 cut(s)	309, 723, 1687, 1746
BfaI	CTAG	4 cut(s)	836, 1071, 1883, 2067
BfmI	CTRYAG	4 cut(s)	1272, 1721, 2322, 2445
BfoI	RGCGCY	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	2590
BfuI	GTATCC	1 cut(s)	2413
BglI	GCCNNNNNGGC	1 cut(s)	443
BglII	AGATCT	2 cut(s)	199, 2021
BmcAI	AGTACT	2 cut(s)	461, 1159
Bme1390I	CCNGG	3 cut(s)	242, 646, 680
Bme18I	GGWCC	5 cut(s)	14, 610, 2099, 2282, 2489
BmeT110I	CYCGRG	2 cut(s)	203, 1528
BmgBI	CACGTC	1 cut(s)	351
BmgT120I	GGNCC	9 cut(s)	14, 610, 1780, 2008, 2009, 2099, 2201, 2282, 2489
BmrFI	CCNGG	3 cut(s)	242, 646, 680
BmsI	GCATC	3 cut(s)	1112, 2237, 2386
BoxI	GACNNNNGTC	1 cut(s)	426
BpiI	GAAGAC	3 cut(s)	81, 1806, 2604
BplI	GAGNNNNNCTC	2 cut(s)	703, 735
BpmI	CTGGAG	2 cut(s)	1709, 2289
Bpu10I	CCTNAGC	2 cut(s)	684, 1032
BpuEI	CTTGAG	5 cut(s)	116, 380, 914, 1300, 1805
BpuMI	CCSGG	1 cut(s)	242
BsaBI	GATNNNNATC	2 cut(s)	1569, 2361
BsaHI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2577
BsaI	GGTCTC	1 cut(s)	1746
BsaWI	WCCGGW	2 cut(s)	566, 790
BsaXI	ACNNNNNCTCC	6 cut(s)	254, 284, 392, 422, 1828, 1858
Bsc4I	CCNNNNNNNGG	7 cut(s)	121, 417, 685, 1013, 2040, 2108, 2359
Bse118I	RCCGGY	1 cut(s)	903
Bse3DI	GCAATG	5 cut(s)	320, 828, 839, 947, 2397
Bse8I	GATNNNNATC	2 cut(s)	1569, 2361
BseAI	TCCGGA	1 cut(s)	790
BseBI	CCWGG	2 cut(s)	646, 680
BseGI	GGATG	4 cut(s)	1552, 1583, 2113, 2401
BseJI	GATNNNNATC	2 cut(s)	1569, 2361
BseLI	CCNNNNNNNGG	7 cut(s)	121, 417, 685, 1013, 2040, 2108, 2359
BseMI	GCAATG	5 cut(s)	320, 828, 839, 947, 2397
BseMII	CTCAG	4 cut(s)	734, 1023, 2200, 2598
BseRI	GAGGAG	5 cut(s)	97, 239, 305, 319, 322
BseSI	GKGCMC	1 cut(s)	2012
BseX3I	CGGCCG	1 cut(s)	573
BseXI	GCAGC	9 cut(s)	645, 747, 824, 827, 859, 1103, 1395, 1707, 2163
BsgI	GTGCAG	1 cut(s)	1617
Bsh1236I	CGCG	4 cut(s)	174, 425, 432, 805
Bsh1285I	CGRYCG	2 cut(s)	172, 576
BshFI	GGCC	8 cut(s)	237, 536, 575, 1501, 1782, 2010, 2203, 2352
BsiEI	CGRYCG	2 cut(s)	172, 576
BsiHKAI	GWGCWC	2 cut(s)	249, 828
BsiHKCI	CYCGRG	2 cut(s)	203, 1528
BsiSI	CCGG	5 cut(s)	242, 411, 567, 791, 904
BslFI	GGGAC	4 cut(s)	434, 605, 627, 2085
BslI	CCNNNNNNNGG	7 cut(s)	121, 417, 685, 1013, 2040, 2108, 2359
BsmAI	GTCTC	4 cut(s)	309, 723, 1687, 1746
BsmFI	GGGAC	4 cut(s)	434, 605, 627, 2085
BsmI	GAATGC	1 cut(s)	844
BsnI	GGCC	8 cut(s)	237, 536, 575, 1501, 1782, 2010, 2203, 2352
Bso31I	GGTCTC	1 cut(s)	1746
BsoBI	CYCGRG	2 cut(s)	203, 1528
Bsp120I	GGGCCC	1 cut(s)	2008
Bsp1286I	GDGCHC	3 cut(s)	249, 828, 2012
Bsp13I	TCCGGA	1 cut(s)	790
Bsp1407I	TGTACA	1 cut(s)	769
Bsp19I	CCATGG	4 cut(s)	120, 537, 1752, 2103
Bsp68I	TCGCGA	1 cut(s)	432
BspANI	GGCC	8 cut(s)	237, 536, 575, 1501, 1782, 2010, 2203, 2352
BspCNI	CTCAG	4 cut(s)	733, 1024, 2199, 2599
BspEI	TCCGGA	1 cut(s)	790
BspFNI	CGCG	4 cut(s)	174, 425, 432, 805
BspHI	TCATGA	2 cut(s)	1474, 1744
BspMAI	CTGCAG	2 cut(s)	1725, 2326
BspMI	ACCTGC	1 cut(s)	2590
BspPI	GGATC	9 cut(s)	136, 149, 656, 1414, 1626, 1639, 1876, 2357, 2370
BspTNI	GGTCTC	1 cut(s)	1746
BsrBI	CCGCTC	2 cut(s)	477, 731
BsrDI	GCAATG	5 cut(s)	320, 828, 839, 947, 2397
BsrFI	RCCGGY	1 cut(s)	903
BsrGI	TGTACA	1 cut(s)	769
BssAI	RCCGGY	1 cut(s)	903
BssNI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2577
BssT1I	CCWWGG	5 cut(s)	120, 537, 1752, 2103, 2247
Bst2UI	CCWGG	2 cut(s)	646, 680
Bst4CI	ACNGT	6 cut(s)	769, 779, 883, 889, 1427, 2550
Bst6I	CTCTTC	2 cut(s)	103, 1924
BstACI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2577
BstAPI	GCANNNNNTGC	2 cut(s)	1100, 2396
BstAUI	TGTACA	1 cut(s)	769
BstC8I	GCNNGC	6 cut(s)	450, 1718, 2156, 2160, 2226, 2538
BstDEI	CTNAG	6 cut(s)	588, 684, 720, 1032, 2186, 2607
BstDSI	CCRYGG	6 cut(s)	120, 537, 702, 879, 1752, 2103
BstEII	GGTNACC	1 cut(s)	2115
BstENI	CCTNNNNNAGG	1 cut(s)	683
BstF5I	GGATG	4 cut(s)	1552, 1583, 2113, 2401
BstFNI	CGCG	4 cut(s)	174, 425, 432, 805
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	2 cut(s)	448, 457
BstMAI	GTCTC	4 cut(s)	309, 723, 1687, 1746
BstMCI	CGRYCG	2 cut(s)	172, 576
BstMWI	GCNNNNNNNGC	6 cut(s)	443, 452, 454, 1100, 2303, 2396
BstNI	CCWGG	2 cut(s)	646, 680
BstNSI	RCATGY	3 cut(s)	1720, 2032, 2540
BstPAI	GACNNNNGTC	1 cut(s)	426
BstPI	GGTNACC	1 cut(s)	2115
BstSCI	CCNGG	3 cut(s)	240, 644, 678
BstSFI	CTRYAG	4 cut(s)	1272, 1721, 2322, 2445
BstSLI	GKGCMC	1 cut(s)	2012
BstUI	CGCG	4 cut(s)	174, 425, 432, 805
BstV1I	GCAGC	9 cut(s)	645, 747, 824, 827, 859, 1103, 1395, 1707, 2163
BstV2I	GAAGAC	3 cut(s)	81, 1806, 2604
BstX2I	RGATCY	8 cut(s)	141, 199, 648, 1406, 1631, 1868, 2021, 2362
BstXI	CCANNNNNNTGG	1 cut(s)	491
BstYI	RGATCY	8 cut(s)	141, 199, 648, 1406, 1631, 1868, 2021, 2362
BstZI	CGGCCG	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	2413
BsuRI	GGCC	8 cut(s)	237, 536, 575, 1501, 1782, 2010, 2203, 2352
BtgI	CCRYGG	6 cut(s)	120, 537, 702, 879, 1752, 2103
BtgZI	GCGATG	1 cut(s)	1868
BtrI	CACGTC	1 cut(s)	351
BtsCI	GGATG	4 cut(s)	1552, 1583, 2113, 2401
BtsI	GCAGTG	1 cut(s)	1548
BtsIMutI	CAGTG	2 cut(s)	885, 1548
BtuMI	TCGCGA	1 cut(s)	432
BveI	ACCTGC	1 cut(s)	2590
Cac8I	GCNNGC	6 cut(s)	450, 1718, 2156, 2160, 2226, 2538
CaiI	CAGNNNCTG	4 cut(s)	651, 818, 1133, 2492
CciI	TCATGA	2 cut(s)	1474, 1744
CfoI	GCGC	2 cut(s)	448, 457
Cfr10I	RCCGGY	1 cut(s)	903
Cfr13I	GGNCC	9 cut(s)	14, 610, 1780, 2008, 2009, 2099, 2201, 2282, 2489
CseI	GACGC	5 cut(s)	275, 403, 410, 431, 443
Csp6I	GTAC	3 cut(s)	460, 770, 1158
CspCI	CAANNNNNGTGG	2 cut(s)	2244, 2279
CviQI	GTAC	3 cut(s)	460, 770, 1158
DdeI	CTNAG	6 cut(s)	588, 684, 720, 1032, 2186, 2607
DrdI	GACNNNNNNGTC	2 cut(s)	413, 617
DseDI	GACNNNNNNGTC	2 cut(s)	413, 617
EaeI	YGGCCR	3 cut(s)	573, 1499, 2350
EagI	CGGCCG	1 cut(s)	573
Eam1104I	CTCTTC	2 cut(s)	103, 1924
EarI	CTCTTC	2 cut(s)	103, 1924
EciI	GGCGGA	1 cut(s)	262
EclXI	CGGCCG	1 cut(s)	573
Eco130I	CCWWGG	5 cut(s)	120, 537, 1752, 2103, 2247
Eco24I	GRGCYC	1 cut(s)	2012
Eco31I	GGTCTC	1 cut(s)	1746
Eco47I	GGWCC	5 cut(s)	14, 610, 2099, 2282, 2489
Eco52I	CGGCCG	1 cut(s)	573
Eco57I	CTGAAG	3 cut(s)	1110, 1208, 1812
Eco88I	CYCGRG	2 cut(s)	203, 1528
Eco91I	GGTNACC	1 cut(s)	2115
EcoNI	CCTNNNNNAGG	1 cut(s)	683
EcoO109I	RGGNCCY	6 cut(s)	14, 1780, 2008, 2009, 2201, 2489
EcoO65I	GGTNACC	1 cut(s)	2115
EcoRI	GAATTC	2 cut(s)	1232, 1947
EcoRII	CCWGG	2 cut(s)	644, 678
EcoT14I	CCWWGG	5 cut(s)	120, 537, 1752, 2103, 2247
EcoT38I	GRGCYC	1 cut(s)	2012
ErhI	CCWWGG	5 cut(s)	120, 537, 1752, 2103, 2247
FalI	AAGNNNNNCTT	4 cut(s)	76, 108, 1996, 2028
FaqI	GGGAC	4 cut(s)	434, 605, 627, 2085
FauI	CCCGC	3 cut(s)	295, 964, 2151
FauNDI	CATATG	1 cut(s)	2056
FbaI	TGATCA	3 cut(s)	858, 2140, 2455
FblI	GTMKAC	2 cut(s)	1294, 2444
FokI	GGATG	4 cut(s)	1559, 1570, 2120, 2408
FriOI	GRGCYC	1 cut(s)	2012
FspBI	CTAG	4 cut(s)	836, 1071, 1883, 2067
GlaI	GCGC	2 cut(s)	447, 456
GsuI	CTGGAG	2 cut(s)	1709, 2289
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	8 cut(s)	237, 536, 575, 1501, 1782, 2010, 2203, 2352
HapII	CCGG	5 cut(s)	242, 411, 567, 791, 904
HgaI	GACGC	5 cut(s)	275, 403, 410, 431, 443
HhaI	GCGC	2 cut(s)	448, 457
Hin1I	GRCGYC	5 cut(s)	267, 402, 414, 435, 2577
Hin6I	GCGC	2 cut(s)	446, 455
HinP1I	GCGC	2 cut(s)	446, 455
HindIII	AAGCTT	1 cut(s)	745
HpaII	CCGG	5 cut(s)	242, 411, 567, 791, 904
HphI	GGTGA	6 cut(s)	64, 139, 1949, 2109, 2207, 2423
Hpy166II	GTNNAC	5 cut(s)	354, 598, 1295, 2180, 2445
Hpy8I	GTNNAC	5 cut(s)	354, 598, 1295, 2180, 2445
Hpy99I	CGWCG	4 cut(s)	197, 236, 269, 437
HpyAV	CCTTC	5 cut(s)	460, 1998, 2022, 2077, 2214
HpyCH4III	ACNGT	6 cut(s)	769, 779, 883, 889, 1427, 2550
HpyCH4IV	ACGT	2 cut(s)	350, 2577
HpyF10VI	GCNNNNNNNGC	6 cut(s)	443, 452, 454, 1100, 2303, 2396
HpyF3I	CTNAG	6 cut(s)	588, 684, 720, 1032, 2186, 2607
HpySE526I	ACGT	2 cut(s)	350, 2577
Hsp92I	GRCGYC	5 cut(s)	267, 402, 414, 435, 2577
HspAI	GCGC	2 cut(s)	446, 455
Kpn2I	TCCGGA	1 cut(s)	790
Ksp22I	TGATCA	3 cut(s)	858, 2140, 2455
LmnI	GCTCC	3 cut(s)	252, 544, 728
Lsp1109I	GCAGC	9 cut(s)	645, 747, 824, 827, 859, 1103, 1395, 1707, 2163
LweI	GCATC	3 cut(s)	1112, 2237, 2386
MaeI	CTAG	4 cut(s)	836, 1071, 1883, 2067
MaeII	ACGT	2 cut(s)	350, 2577
MaeIII	GTNAC	5 cut(s)	851, 883, 1680, 1756, 2115
MbiI	CCGCTC	2 cut(s)	477, 731
MflI	RGATCY	8 cut(s)	141, 199, 648, 1406, 1631, 1868, 2021, 2362
MhlI	GDGCHC	3 cut(s)	249, 828, 2012
MlsI	TGGCCA	2 cut(s)	1501, 2352
MluI	ACGCGT	2 cut(s)	423, 803
MluNI	TGGCCA	2 cut(s)	1501, 2352
MmeI	TCCRAC	5 cut(s)	192, 706, 1159, 2106, 2524
Mox20I	TGGCCA	2 cut(s)	1501, 2352
MroI	TCCGGA	1 cut(s)	790
MroXI	GAANNNNTTC	3 cut(s)	1398, 1987, 2256
MscI	TGGCCA	2 cut(s)	1501, 2352
MseI	TTAA	3 cut(s)	663, 1569, 2617
Msp20I	TGGCCA	2 cut(s)	1501, 2352
MspA1I	CMGCKG	3 cut(s)	818, 1031, 1687
MspI	CCGG	5 cut(s)	242, 411, 567, 791, 904
MspR9I	CCNGG	3 cut(s)	242, 646, 680
Mva1269I	GAATGC	1 cut(s)	844
MvaI	CCWGG	2 cut(s)	646, 680
MvnI	CGCG	4 cut(s)	174, 425, 432, 805
MwoI	GCNNNNNNNGC	6 cut(s)	443, 452, 454, 1100, 2303, 2396
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	4 cut(s)	120, 537, 1752, 2103
NdeI	CATATG	1 cut(s)	2056
NmeAIII	GCCGAG	1 cut(s)	581
NmuCI	GTSAC	2 cut(s)	883, 2115
NruI	TCGCGA	1 cut(s)	432
NspI	RCATGY	3 cut(s)	1720, 2032, 2540
PaeI	GCATGC	2 cut(s)	1720, 2540
PaeR7I	CTCGAG	2 cut(s)	203, 1528
PagI	TCATGA	2 cut(s)	1474, 1744
PciI	ACATGT	1 cut(s)	2028
PcsI	WCGNNNNNNNCGW	3 cut(s)	201, 273, 429
PctI	GAATGC	1 cut(s)	844
PdmI	GAANNNNTTC	3 cut(s)	1398, 1987, 2256
PfeI	GAWTC	4 cut(s)	21, 1025, 1130, 2593
PflMI	CCANNNNNTGG	1 cut(s)	1013
PpuMI	RGGWCCY	2 cut(s)	14, 2489
PscI	ACATGT	1 cut(s)	2028
PshAI	GACNNNNGTC	1 cut(s)	426
PshBI	ATTAAT	1 cut(s)	1569
Psp5II	RGGWCCY	2 cut(s)	14, 2489
Psp6I	CCWGG	2 cut(s)	644, 678
PspEI	GGTNACC	1 cut(s)	2115
PspGI	CCWGG	2 cut(s)	644, 678
PspOMI	GGGCCC	1 cut(s)	2008
PspPI	GGNCC	9 cut(s)	14, 610, 1780, 2008, 2009, 2099, 2201, 2282, 2489
PspPPI	RGGWCCY	2 cut(s)	14, 2489
PstI	CTGCAG	2 cut(s)	1725, 2326
PstNI	CAGNNNCTG	4 cut(s)	651, 818, 1133, 2492
PsuI	RGATCY	8 cut(s)	141, 199, 648, 1406, 1631, 1868, 2021, 2362
PvuII	CAGCTG	3 cut(s)	818, 1031, 1687
RruI	TCGCGA	1 cut(s)	432
RsaI	GTAC	3 cut(s)	461, 771, 1159
RsaNI	GTAC	3 cut(s)	460, 770, 1158
SaqAI	TTAA	3 cut(s)	663, 1569, 2617
Sau96I	GGNCC	9 cut(s)	14, 610, 1780, 2008, 2009, 2099, 2201, 2282, 2489
ScaI	AGTACT	2 cut(s)	461, 1159
ScrFI	CCNGG	3 cut(s)	242, 646, 680
SduI	GDGCHC	3 cut(s)	249, 828, 2012
SfaNI	GCATC	3 cut(s)	1112, 2237, 2386
SfcI	CTRYAG	4 cut(s)	1272, 1721, 2322, 2445
Sfr274I	CTCGAG	2 cut(s)	203, 1528
SinI	GGWCC	5 cut(s)	14, 610, 2099, 2282, 2489
SlaI	CTCGAG	2 cut(s)	203, 1528
SmlI	CTYRAG	7 cut(s)	131, 203, 395, 893, 1315, 1528, 1784
SmoI	CTYRAG	7 cut(s)	131, 203, 395, 893, 1315, 1528, 1784
SphI	GCATGC	2 cut(s)	1720, 2540
SspI	AATATT	1 cut(s)	1432
SspMI	CTAG	4 cut(s)	836, 1071, 1883, 2067
StyD4I	CCNGG	3 cut(s)	240, 644, 678
StyI	CCWWGG	5 cut(s)	120, 537, 1752, 2103, 2247
TaaI	ACNGT	6 cut(s)	769, 779, 883, 889, 1427, 2550
TaiI	ACGT	2 cut(s)	353, 2580
TaqI	TCGA	7 cut(s)	195, 204, 710, 848, 1529, 1876, 2231
TatI	WGTACW	3 cut(s)	459, 769, 1157
TauI	GCSGC	4 cut(s)	230, 455, 480, 575
TfiI	GAWTC	4 cut(s)	21, 1025, 1130, 2593
Tru1I	TTAA	3 cut(s)	663, 1569, 2617
Tru9I	TTAA	3 cut(s)	663, 1569, 2617
TscAI	CASTG	2 cut(s)	892, 1548
TseFI	GTSAC	2 cut(s)	883, 2115
TseI	GCWGC	9 cut(s)	658, 760, 812, 815, 872, 1091, 1383, 1720, 2151
Tsp45I	GTSAC	2 cut(s)	883, 2115
TspDTI	ATGAA	4 cut(s)	1529, 1720, 2253, 2529
TspGWI	ACGGA	3 cut(s)	1533, 1644, 1941
TspRI	CASTG	2 cut(s)	892, 1548
Van91I	CCANNNNNTGG	1 cut(s)	1013
VpaK11BI	GGWCC	5 cut(s)	14, 610, 2099, 2282, 2489
VspI	ATTAAT	1 cut(s)	1569
XagI	CCTNNNNNAGG	1 cut(s)	683
XapI	RAATTY	3 cut(s)	1232, 1922, 1947
XceI	RCATGY	3 cut(s)	1720, 2032, 2540
XcmI	CCANNNNNNNNNTGG	2 cut(s)	445, 1759
XhoI	CTCGAG	2 cut(s)	203, 1528
XmiI	GTMKAC	2 cut(s)	1294, 2444
XmnI	GAANNNNTTC	3 cut(s)	1398, 1987, 2256
XspI	CTAG	4 cut(s)	836, 1071, 1883, 2067
ZraI	GACGTC	1 cut(s)	2578
ZrmI	AGTACT	2 cut(s)	461, 1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.