Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011122

Physical Location & Seq

Genomic Coordinates Forward (+)

33819658 .. 33823598

Gene Structure 3941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG259100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2805 bp

ATGAGTTTCGCAGGACCCAGAATCTCAAAACCCACAAAACCCCCAAACTCCACACCCCCACAAAACCAGCTCACCCCATCTTCAAGGTCTTCTTCCTCTTCTCTCTCCTCCCACCTCGCCATGGTGGAACTCAAGCAGAGGATCCTCACCTCCCTCTCCAAACTCTCCGACCGCGACACCTACCAAATCGCCGTCGAAGATCTCGAGAAAATTATCCAGACCCTCGCCGCCGACGGCCTCCCGGTGCTCCTCAACTGCCTCTACGACGCCTCCGCCGACCCCAAACCCGCCGTCAAGAAAGAGTCTCTACGCCTCCTCGCATTGCTCTCCTCCTCCCACCCCGATTTCACGTCCACCCACCTCACAAAGATCATCTCCCACATCGTCAAACGCCTCAAGGACGCCGACTCCGGCGTCAGGGACGCGTGTCGCGACGCCATTGGGGCGCTGGCGGCGCAGTACTTGAAGGGGGAGAGCAGCGGCGGCGACAACAATGTTGGGTCGGCGGTGGTGGGGTTGTTTGTGAAGCCGTTGTTTGAGGCCATGGGGGAGCAGAACAAAGGGGTGCAATCCGGTGCGGCCGTGTGTATGGCTAAGATTGTGGACTCGGCTTCGGACCCTCCTGTCCCTGCTTTTCAGAAGCTCTGTCCCAGGATCTGTAAGCTGCTTAACAATCCTAACTTCCTGGCTAAGGCTTCGCTGTTGCCAGTGGTTTCGAGCTTGTCTCAGGTTGGAGCGGTAGCACCGCAAAGCTTGGATAATTTGCTGCCAACTGTACATGACTGTCTTGGAAGTCCAGATTGGGCAACGCGTAAAGCAGCAGCTGATGTGCTCATTGCACTAGCATTGCATTCGAGTAACTTGATCACAGATAGAGCTGCTTCCACGGTCACTGTGCTTGAGTCTTGCCGGTTTGACAAGATAAAACCCGTCAGAGATAGCATGACAGAAGCGTTGCAGTTTTGGAAAAAGATTGCGGGGGGAGATGAATCTCCAAAAGAGCAGAAAGCCCCATCTCATGGAAATCCGGAATCAGCTGAGGTTTCAGAAAGGAATGAGCCAAAAGTTTCAAAGCCTAGTGAGAAAACAGAACAAGCAGCAAAGGTTGCATCTAATGGTTCTTCCCCTACTTCAGCAGATTCTGTTTCTAAAGCCAAAGGTAGTACTATTCCAGATAAAGCTGTTGGACTTCTGAAGAAGAAACCGCCTGTCTTGACTGACAAAGAGCTAAACCCAGAATTCTTCCAGAAACTTGAAAGGGGTTCTGGCGAGTTGCCTGTAGAGGTAGCTGTTCCTCGTAGACATCTCAATACTTCAAACTCAAGTAATGAGGTAGAAACCGAGTCAAATGCTATGGACTCAAAGGAAAGGTCAAACAACATTGGAAGCAGCCATTCAGAAGATTTTCGTGGATCTTTCAATAGTAAATACCGTAATATTGAGAGAGGAATTGCTGGTCTGTATTCTAAACAAAGAGATCATGATGACTTGGCACGGGATAAATGGCCAGAAGAAAGAATGAACGGAAAAGACTCGAGAATGAGAGCAGTGGATGTTGATGATAGGACTGATATTAATCAAAGGGAGTCATCCAGCAGTCGTGCAGGGTTCTCTAAAACTGATGGTCAATCTGACGGATCCTTCGCCAATAGCAAAGGAAATTGGTTGGCTATCCAAAGGCAGTTGTTACAGCTGGAGAGACAACAAGCTCATTTGATGAGCATGCTGCAGGATTTCATGGGCGGGTCTCATGACACCATGGTAACTTTGGAGAACAGGGTAAGGGGCCTTGAGAGAATTGTGGAAGACATGGCACGGGATTTATCAATATCTTCAGGTAGGAGAGGTGGTAATTTTGCGATGGGGTTTGAGGGATCTAATCGACAACTAAGCAAGTATAATGGTTTCCCTGACTATGCGAGTGCCAAATTTGGAAGAGGTGGTGATGGACGAATTCCGTTTGGGGAAAGATATTCTCAAACTGATGGAATTGTTTCGGACATGAGGGGAAGGGGCCCTTCTTGGAGATCTGACATGTCCGAGGTGTGGGATTTTTCTACATATGGTGGTTCTAGAAATGGGCAGAGGAAGGCTGTTGGTGGTGGTCCCATGGATGGTAGGTCACCCAAGTCGGAAAATGGAAGTGATCATGGTGGCAGCAGGCGGGCATGGGAGAAAGGGAGTGGACTTCTCAGGTTTGGTGAGGGGCCTTCCGCAAGAAGTGTTTGGCAAGCATCGAAAGATGAAGCTACCTTGGAAGCAATTCGTGTGGCTGGAGAGGATAATGGACCATCAAGAACAGCAAGAGTAGCTATGCCTGAATTGACTGCAGAGGCTTTGGGAGATGATAGTGTTGGCCAAGATCGGGATCCAATCTGGACTTCTTGGACTAATGCAATGGATGCTTTTCAAGTGGGTGATATGGATACAGCCTATGCGGAAGTATTGTCTACAGGAGATGATCACTTGCTTGTAAAACTAATGGATAGATCAGGTCCTGTGATTGACCAACTTTCAAATGAAACAGCAACCGAGGTCTTGCATGCGGTTGGACAGTTTTTACCAGAGCAAAACTTGTTTGACGTCTGCCTGTCTTGGATTCAGCAGTTGGTTGAAATAGTGCTGGAAAATGGACCTGATGTCCTCGGCATTCCAAATGAAGTAAGGAAGGAGATAGTACTGAATTTGCATGAAGCTTCTGTAGCAATGGATCCACCTGAGGACTGGGAGGGTGCAATGCCTGATCAACTATTGCTGCAGTTGGCATCCACCTGGGGAATCAGTCTGCAACAACATGCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0010031 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0030863 GO:0030981 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050879 GO:0055028 GO:0060560 GO:0071840 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

934

Amino Acids

101.29

Weight (kDa)

5.73

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOR1L1_N	PF24714	42 - 324	1.3e-122	TORTIFOLIA1 N-terminal
TOR1L1_C	PF24713	792 - 925	1.7e-66	TORTIFOLIA1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27060
fragaria_vesca	FvH4_3g22240
malus_domestica	MD03G1206600.v1.1 MD11G1222000.v1.1
prunus_persica	Prupe.4G209400_v2.0.a1 Prupe.4G209400_v2.0.a1
pyrus_communis	pycom03g15640 pycom11g19580
rosa_chinensis	RchiOBHm_Chr5g0038291
rosa_laevigata	RLG00000033844
rosa_multiflora	Rmu_sc0000764.1_g000003 Rmu_sc0003858.1_g000004 Rmu_sc0035524.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042730
rosa_rugosa	Rorug05G0171800
rosa_samantha	Rh5AG259100 Rh5BG262900 Rh5CG295300 Rh5DG271900
rosa_wichuraiana	Rw5G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	413, 623
AatII	GACGTC	1 cut(s)	2586
AccB7I	CCANNNNNTGG	1 cut(s)	1019
AccBSI	CCGCTC	1 cut(s)	737
AccI	GTMKAC	2 cut(s)	1300, 2450
AccII	CGCG	4 cut(s)	174, 425, 432, 811
AccIII	TCCGGA	1 cut(s)	1027
AcoI	YGGCCR	3 cut(s)	579, 1505, 2356
AcsI	RAATTY	4 cut(s)	1238, 1928, 1953, 2683
AcuI	CTGAAG	3 cut(s)	1116, 1214, 1818
AcyI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2583
AfaI	GTAC	4 cut(s)	461, 777, 1165, 2679
AfiI	CCNNNNNNNGG	7 cut(s)	121, 417, 691, 1019, 2046, 2114, 2365
AflIII	ACRYGT	3 cut(s)	423, 809, 2034
AgsI	TTSAA	9 cut(s)	84, 466, 1071, 1256, 1317, 1420, 2411, 2517, 2615
AhdI	GACNNNNNGTC	1 cut(s)	2639
AjiI	CACGTC	1 cut(s)	351
AjnI	CCWGG	3 cut(s)	650, 684, 2771
AjuI	GAANNNNNNNTTGG	4 cut(s)	784, 816, 2365, 2397
Alw21I	GWGCWC	2 cut(s)	249, 834
Alw26I	GTCTC	4 cut(s)	309, 729, 1693, 1752
AlwNI	CAGNNNCTG	4 cut(s)	657, 824, 1142, 2498
Ama87I	CYCGRG	2 cut(s)	203, 1534
Aor13HI	TCCGGA	1 cut(s)	1027
AoxI	GGCC	8 cut(s)	235, 540, 579, 1505, 1786, 2014, 2207, 2356
ApaI	GGGCCC	1 cut(s)	2018
ApoI	RAATTY	4 cut(s)	1238, 1928, 1953, 2683
ArsI	GACNNNNNNTTYG	6 cut(s)	276, 308, 1355, 1387, 1625, 1657
AseI	ATTAAT	1 cut(s)	1575
Asp700I	GAANNNNTTC	3 cut(s)	1404, 1993, 2262
AspLEI	GCGC	2 cut(s)	448, 457
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	6 cut(s)	64, 139, 1955, 2115, 2213, 2429
AvaI	CYCGRG	2 cut(s)	203, 1534
AvaII	GGWCC	6 cut(s)	14, 616, 2105, 2288, 2495, 2633
AxyI	CCTNAGG	1 cut(s)	2718
BaeGI	GKGCMC	1 cut(s)	2018
BalI	TGGCCA	2 cut(s)	1507, 2358
BamHI	GGATCC	4 cut(s)	141, 1637, 2368, 2710
BanII	GRGCYC	1 cut(s)	2018
BbsI	GAAGAC	2 cut(s)	81, 1812
Bbv12I	GWGCWC	2 cut(s)	249, 834
BbvCI	CCTCAGC	1 cut(s)	1038
BccI	CCATC	8 cut(s)	85, 1021, 1616, 1855, 1940, 1979, 2108, 2299
BceAI	ACGGC	5 cut(s)	176, 250, 275, 514, 566
BcgI	CGANNNNNNTGC	4 cut(s)	834, 868, 1331, 1365
BciT130I	CCWGG	3 cut(s)	652, 686, 2773
BciVI	GTATCC	1 cut(s)	2419
BclI	TGATCA	4 cut(s)	864, 2146, 2461, 2743
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	4 cut(s)	309, 729, 1693, 1752
BfaI	CTAG	3 cut(s)	842, 1077, 2073
BfmI	CTRYAG	6 cut(s)	1278, 1727, 2328, 2451, 2700, 2756
BfoI	RGCGCY	1 cut(s)	449
BfuI	GTATCC	1 cut(s)	2419
BglI	GCCNNNNNGGC	1 cut(s)	443
BglII	AGATCT	2 cut(s)	199, 2027
BmcAI	AGTACT	3 cut(s)	461, 1165, 2679
Bme1390I	CCNGG	4 cut(s)	242, 652, 686, 2773
Bme18I	GGWCC	6 cut(s)	14, 616, 2105, 2288, 2495, 2633
BmeRI	GACNNNNNGTC	1 cut(s)	2639
BmeT110I	CYCGRG	2 cut(s)	203, 1534
BmgBI	CACGTC	1 cut(s)	351
BmrFI	CCNGG	4 cut(s)	242, 652, 686, 2773
BmrI	ACTGGG	1 cut(s)	2734
BmsI	GCATC	4 cut(s)	1118, 2243, 2392, 2774
BmuI	ACTGGG	1 cut(s)	2734
BoxI	GACNNNNGTC	1 cut(s)	426
BpiI	GAAGAC	2 cut(s)	81, 1812
BplI	GAGNNNNNCTC	2 cut(s)	709, 741
BpmI	CTGGAG	2 cut(s)	1715, 2295
Bpu10I	CCTNAGC	2 cut(s)	690, 1038
BpuEI	CTTGAG	5 cut(s)	116, 380, 920, 1306, 1811
BpuMI	CCSGG	1 cut(s)	242
BsaBI	GATNNNNATC	2 cut(s)	1575, 2367
BsaHI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2583
BsaI	GGTCTC	1 cut(s)	1752
BsaWI	WCCGGW	2 cut(s)	572, 1027
BsaXI	ACNNNNNCTCC	6 cut(s)	254, 284, 392, 422, 1834, 1864
Bsc4I	CCNNNNNNNGG	7 cut(s)	121, 417, 691, 1019, 2046, 2114, 2365
Bse118I	RCCGGY	1 cut(s)	909
Bse1I	ACTGG	2 cut(s)	707, 2729
Bse21I	CCTNAGG	1 cut(s)	2718
Bse3DI	GCAATG	6 cut(s)	320, 834, 845, 2403, 2712, 2742
Bse8I	GATNNNNATC	2 cut(s)	1575, 2367
BseAI	TCCGGA	1 cut(s)	1027
BseBI	CCWGG	3 cut(s)	652, 686, 2773
BseGI	GGATG	5 cut(s)	1558, 1589, 2119, 2407, 2765
BseJI	GATNNNNATC	2 cut(s)	1575, 2367
BseLI	CCNNNNNNNGG	7 cut(s)	121, 417, 691, 1019, 2046, 2114, 2365
BseMI	GCAATG	6 cut(s)	320, 834, 845, 2403, 2712, 2742
BseMII	CTCAG	4 cut(s)	740, 1029, 2206, 2709
BseNI	ACTGG	2 cut(s)	707, 2729
BseRI	GAGGAG	5 cut(s)	97, 239, 305, 319, 322
BseSI	GKGCMC	1 cut(s)	2018
BseX3I	CGGCCG	1 cut(s)	579
BsgI	GTGCAG	1 cut(s)	1623
Bsh1236I	CGCG	4 cut(s)	174, 425, 432, 811
Bsh1285I	CGRYCG	2 cut(s)	172, 582
BshFI	GGCC	8 cut(s)	237, 542, 581, 1507, 1788, 2016, 2209, 2358
BsiEI	CGRYCG	2 cut(s)	172, 582
BsiHKAI	GWGCWC	2 cut(s)	249, 834
BsiHKCI	CYCGRG	2 cut(s)	203, 1534
BsiSI	CCGG	5 cut(s)	242, 411, 573, 910, 1028
BslFI	GGGAC	4 cut(s)	434, 611, 633, 2091
BslI	CCNNNNNNNGG	7 cut(s)	121, 417, 691, 1019, 2046, 2114, 2365
BsmAI	GTCTC	4 cut(s)	309, 729, 1693, 1752
BsmFI	GGGAC	4 cut(s)	434, 611, 633, 2091
BsmI	GAATGC	2 cut(s)	850, 2649
BsnI	GGCC	8 cut(s)	237, 542, 581, 1507, 1788, 2016, 2209, 2358
Bso31I	GGTCTC	1 cut(s)	1752
BsoBI	CYCGRG	2 cut(s)	203, 1534
Bsp120I	GGGCCC	1 cut(s)	2014
Bsp1286I	GDGCHC	3 cut(s)	249, 834, 2018
Bsp13I	TCCGGA	1 cut(s)	1027
Bsp1407I	TGTACA	1 cut(s)	775
Bsp19I	CCATGG	4 cut(s)	120, 543, 1758, 2109
Bsp68I	TCGCGA	1 cut(s)	432
BspANI	GGCC	8 cut(s)	237, 542, 581, 1507, 1788, 2016, 2209, 2358
BspCNI	CTCAG	4 cut(s)	739, 1030, 2205, 2710
BspEI	TCCGGA	1 cut(s)	1027
BspFNI	CGCG	4 cut(s)	174, 425, 432, 811
BspHI	TCATGA	2 cut(s)	1480, 1750
BspMAI	CTGCAG	3 cut(s)	1731, 2332, 2760
BspTNI	GGTCTC	1 cut(s)	1752
BsrBI	CCGCTC	1 cut(s)	737
BsrDI	GCAATG	6 cut(s)	320, 834, 845, 2403, 2712, 2742
BsrFI	RCCGGY	1 cut(s)	909
BsrGI	TGTACA	1 cut(s)	775
BsrI	ACTGG	2 cut(s)	707, 2729
BssAI	RCCGGY	1 cut(s)	909
BssNI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2583
BssT1I	CCWWGG	5 cut(s)	120, 543, 1758, 2109, 2253
Bst2UI	CCWGG	3 cut(s)	652, 686, 2773
Bst4CI	ACNGT	6 cut(s)	775, 785, 889, 895, 1433, 2556
Bst6I	CTCTTC	2 cut(s)	103, 1930
BstACI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2583
BstAPI	GCANNNNNTGC	2 cut(s)	1106, 2402
BstAUI	TGTACA	1 cut(s)	775
BstC8I	GCNNGC	6 cut(s)	450, 1724, 2162, 2166, 2232, 2544
BstDEI	CTNAG	7 cut(s)	594, 690, 726, 1038, 1889, 2192, 2718
BstDSI	CCRYGG	5 cut(s)	120, 543, 885, 1758, 2109
BstEII	GGTNACC	1 cut(s)	2121
BstENI	CCTNNNNNAGG	1 cut(s)	689
BstF5I	GGATG	5 cut(s)	1558, 1589, 2119, 2407, 2765
BstFNI	CGCG	4 cut(s)	174, 425, 432, 811
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	2 cut(s)	448, 457
BstMAI	GTCTC	4 cut(s)	309, 729, 1693, 1752
BstMCI	CGRYCG	2 cut(s)	172, 582
BstMWI	GCNNNNNNNGC	8 cut(s)	443, 452, 454, 483, 1106, 2309, 2402, 2702
BstNI	CCWGG	3 cut(s)	652, 686, 2773
BstNSI	RCATGY	4 cut(s)	1726, 2038, 2546, 2798
BstPAI	GACNNNNGTC	1 cut(s)	426
BstPI	GGTNACC	1 cut(s)	2121
BstSCI	CCNGG	4 cut(s)	240, 650, 684, 2771
BstSFI	CTRYAG	6 cut(s)	1278, 1727, 2328, 2451, 2700, 2756
BstSLI	GKGCMC	1 cut(s)	2018
BstUI	CGCG	4 cut(s)	174, 425, 432, 811
BstV2I	GAAGAC	2 cut(s)	81, 1812
BstX2I	RGATCY	9 cut(s)	141, 199, 654, 1412, 1637, 1874, 2027, 2368, 2710
BstYI	RGATCY	9 cut(s)	141, 199, 654, 1412, 1637, 1874, 2027, 2368, 2710
BstZI	CGGCCG	1 cut(s)	579
Bsu36I	CCTNAGG	1 cut(s)	2718
BsuI	GTATCC	1 cut(s)	2419
BsuRI	GGCC	8 cut(s)	237, 542, 581, 1507, 1788, 2016, 2209, 2358
BtgI	CCRYGG	5 cut(s)	120, 543, 885, 1758, 2109
BtgZI	GCGATG	1 cut(s)	1874
BtrI	CACGTC	1 cut(s)	351
BtsCI	GGATG	5 cut(s)	1558, 1589, 2119, 2407, 2765
BtsI	GCAGTG	1 cut(s)	1554
BtsIMutI	CAGTG	3 cut(s)	714, 891, 1554
BtuMI	TCGCGA	1 cut(s)	432
Cac8I	GCNNGC	6 cut(s)	450, 1724, 2162, 2166, 2232, 2544
CaiI	CAGNNNCTG	4 cut(s)	657, 824, 1142, 2498
CciI	TCATGA	2 cut(s)	1480, 1750
CfoI	GCGC	2 cut(s)	448, 457
Cfr10I	RCCGGY	1 cut(s)	909
CseI	GACGC	5 cut(s)	275, 403, 410, 431, 443
Csp6I	GTAC	4 cut(s)	460, 776, 1164, 2678
CspCI	CAANNNNNGTGG	2 cut(s)	2250, 2285
CviQI	GTAC	4 cut(s)	460, 776, 1164, 2678
DdeI	CTNAG	7 cut(s)	594, 690, 726, 1038, 1889, 2192, 2718
DrdI	GACNNNNNNGTC	2 cut(s)	413, 623
DriI	GACNNNNNGTC	1 cut(s)	2639
DseDI	GACNNNNNNGTC	2 cut(s)	413, 623
EaeI	YGGCCR	3 cut(s)	579, 1505, 2356
EagI	CGGCCG	1 cut(s)	579
Eam1104I	CTCTTC	2 cut(s)	103, 1930
Eam1105I	GACNNNNNGTC	1 cut(s)	2639
EarI	CTCTTC	2 cut(s)	103, 1930
EciI	GGCGGA	1 cut(s)	262
EclXI	CGGCCG	1 cut(s)	579
Eco130I	CCWWGG	5 cut(s)	120, 543, 1758, 2109, 2253
Eco24I	GRGCYC	1 cut(s)	2018
Eco31I	GGTCTC	1 cut(s)	1752
Eco47I	GGWCC	6 cut(s)	14, 616, 2105, 2288, 2495, 2633
Eco52I	CGGCCG	1 cut(s)	579
Eco57I	CTGAAG	3 cut(s)	1116, 1214, 1818
Eco81I	CCTNAGG	1 cut(s)	2718
Eco88I	CYCGRG	2 cut(s)	203, 1534
Eco91I	GGTNACC	1 cut(s)	2121
EcoNI	CCTNNNNNAGG	1 cut(s)	689
EcoO109I	RGGNCCY	6 cut(s)	14, 1786, 2014, 2015, 2207, 2495
EcoO65I	GGTNACC	1 cut(s)	2121
EcoRI	GAATTC	2 cut(s)	1238, 1953
EcoRII	CCWGG	3 cut(s)	650, 684, 2771
EcoT14I	CCWWGG	5 cut(s)	120, 543, 1758, 2109, 2253
EcoT38I	GRGCYC	1 cut(s)	2018
ErhI	CCWWGG	5 cut(s)	120, 543, 1758, 2109, 2253
FalI	AAGNNNNNCTT	4 cut(s)	76, 108, 2002, 2034
FaqI	GGGAC	4 cut(s)	434, 611, 633, 2091
FauI	CCCGC	4 cut(s)	295, 970, 1736, 2157
FauNDI	CATATG	1 cut(s)	2062
FbaI	TGATCA	4 cut(s)	864, 2146, 2461, 2743
FblI	GTMKAC	2 cut(s)	1300, 2450
FokI	GGATG	5 cut(s)	1565, 1576, 2126, 2414, 2752
FriOI	GRGCYC	1 cut(s)	2018
FspBI	CTAG	3 cut(s)	842, 1077, 2073
GlaI	GCGC	2 cut(s)	447, 456
GsuI	CTGGAG	2 cut(s)	1715, 2295
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	8 cut(s)	237, 542, 581, 1507, 1788, 2016, 2209, 2358
HapII	CCGG	5 cut(s)	242, 411, 573, 910, 1028
HgaI	GACGC	5 cut(s)	275, 403, 410, 431, 443
HhaI	GCGC	2 cut(s)	448, 457
Hin1I	GRCGYC	5 cut(s)	267, 402, 414, 435, 2583
Hin6I	GCGC	2 cut(s)	446, 455
HinP1I	GCGC	2 cut(s)	446, 455
HindIII	AAGCTT	2 cut(s)	751, 2694
HpaII	CCGG	5 cut(s)	242, 411, 573, 910, 1028
HphI	GGTGA	6 cut(s)	64, 139, 1955, 2115, 2213, 2429
Hpy166II	GTNNAC	5 cut(s)	354, 604, 1301, 2186, 2451
Hpy8I	GTNNAC	5 cut(s)	354, 604, 1301, 2186, 2451
Hpy99I	CGWCG	4 cut(s)	197, 236, 269, 437
HpyAV	CCTTC	7 cut(s)	460, 1651, 2004, 2028, 2083, 2220, 2662
HpyCH4III	ACNGT	6 cut(s)	775, 785, 889, 895, 1433, 2556
HpyCH4IV	ACGT	2 cut(s)	350, 2583
HpyF10VI	GCNNNNNNNGC	8 cut(s)	443, 452, 454, 483, 1106, 2309, 2402, 2702
HpyF3I	CTNAG	7 cut(s)	594, 690, 726, 1038, 1889, 2192, 2718
HpySE526I	ACGT	2 cut(s)	350, 2583
Hsp92I	GRCGYC	5 cut(s)	267, 402, 414, 435, 2583
HspAI	GCGC	2 cut(s)	446, 455
Kpn2I	TCCGGA	1 cut(s)	1027
Ksp22I	TGATCA	4 cut(s)	864, 2146, 2461, 2743
LmnI	GCTCC	3 cut(s)	252, 550, 734
LweI	GCATC	4 cut(s)	1118, 2243, 2392, 2774
MaeI	CTAG	3 cut(s)	842, 1077, 2073
MaeII	ACGT	2 cut(s)	350, 2583
MaeIII	GTNAC	5 cut(s)	857, 889, 1686, 1762, 2121
MbiI	CCGCTC	1 cut(s)	737
MflI	RGATCY	9 cut(s)	141, 199, 654, 1412, 1637, 1874, 2027, 2368, 2710
MhlI	GDGCHC	3 cut(s)	249, 834, 2018
MlsI	TGGCCA	2 cut(s)	1507, 2358
MluI	ACGCGT	2 cut(s)	423, 809
MluNI	TGGCCA	2 cut(s)	1507, 2358
MlyI	GAGTC	8 cut(s)	311, 401, 599, 911, 1352, 1352, 1526, 1595
MmeI	TCCRAC	5 cut(s)	192, 712, 1165, 2112, 2530
Mox20I	TGGCCA	2 cut(s)	1507, 2358
MroI	TCCGGA	1 cut(s)	1027
MroXI	GAANNNNTTC	3 cut(s)	1404, 1993, 2262
MscI	TGGCCA	2 cut(s)	1507, 2358
MseI	TTAA	2 cut(s)	669, 1575
Msp20I	TGGCCA	2 cut(s)	1507, 2358
MspA1I	CMGCKG	4 cut(s)	480, 824, 1037, 1693
MspI	CCGG	5 cut(s)	242, 411, 573, 910, 1028
MspR9I	CCNGG	4 cut(s)	242, 652, 686, 2773
Mva1269I	GAATGC	2 cut(s)	850, 2649
MvaI	CCWGG	3 cut(s)	652, 686, 2773
MvnI	CGCG	4 cut(s)	174, 425, 432, 811
MwoI	GCNNNNNNNGC	8 cut(s)	443, 452, 454, 483, 1106, 2309, 2402, 2702
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	4 cut(s)	120, 543, 1758, 2109
NdeI	CATATG	1 cut(s)	2062
NmeAIII	GCCGAG	2 cut(s)	587, 2625
NmuCI	GTSAC	2 cut(s)	889, 2121
NruI	TCGCGA	1 cut(s)	432
NspI	RCATGY	4 cut(s)	1726, 2038, 2546, 2798
PaeI	GCATGC	2 cut(s)	1726, 2546
PaeR7I	CTCGAG	2 cut(s)	203, 1534
PagI	TCATGA	2 cut(s)	1480, 1750
PciI	ACATGT	1 cut(s)	2034
PcsI	WCGNNNNNNNCGW	3 cut(s)	201, 273, 429
PctI	GAATGC	2 cut(s)	850, 2649
PdmI	GAANNNNTTC	3 cut(s)	1404, 1993, 2262
PfeI	GAWTC	6 cut(s)	21, 989, 1031, 1139, 2599, 2778
PflMI	CCANNNNNTGG	1 cut(s)	1019
PleI	GAGTC	8 cut(s)	310, 401, 599, 910, 1351, 1352, 1526, 1594
PpsI	GAGTC	8 cut(s)	310, 401, 599, 910, 1351, 1352, 1526, 1594
PpuMI	RGGWCCY	2 cut(s)	14, 2495
PscI	ACATGT	1 cut(s)	2034
PshAI	GACNNNNGTC	1 cut(s)	426
PshBI	ATTAAT	1 cut(s)	1575
Psp5II	RGGWCCY	2 cut(s)	14, 2495
Psp6I	CCWGG	3 cut(s)	650, 684, 2771
PspEI	GGTNACC	1 cut(s)	2121
PspGI	CCWGG	3 cut(s)	650, 684, 2771
PspOMI	GGGCCC	1 cut(s)	2014
PspPPI	RGGWCCY	2 cut(s)	14, 2495
PstI	CTGCAG	3 cut(s)	1731, 2332, 2760
PstNI	CAGNNNCTG	4 cut(s)	657, 824, 1142, 2498
PsuI	RGATCY	9 cut(s)	141, 199, 654, 1412, 1637, 1874, 2027, 2368, 2710
PvuII	CAGCTG	3 cut(s)	824, 1037, 1693
RruI	TCGCGA	1 cut(s)	432
RsaI	GTAC	4 cut(s)	461, 777, 1165, 2679
RsaNI	GTAC	4 cut(s)	460, 776, 1164, 2678
SaqAI	TTAA	2 cut(s)	669, 1575
ScaI	AGTACT	3 cut(s)	461, 1165, 2679
SchI	GAGTC	8 cut(s)	311, 401, 599, 911, 1352, 1352, 1526, 1595
ScrFI	CCNGG	4 cut(s)	242, 652, 686, 2773
SduI	GDGCHC	3 cut(s)	249, 834, 2018
SfaNI	GCATC	4 cut(s)	1118, 2243, 2392, 2774
SfcI	CTRYAG	6 cut(s)	1278, 1727, 2328, 2451, 2700, 2756
Sfr274I	CTCGAG	2 cut(s)	203, 1534
SinI	GGWCC	6 cut(s)	14, 616, 2105, 2288, 2495, 2633
SlaI	CTCGAG	2 cut(s)	203, 1534
SmlI	CTYRAG	7 cut(s)	131, 203, 395, 899, 1321, 1534, 1790
SmoI	CTYRAG	7 cut(s)	131, 203, 395, 899, 1321, 1534, 1790
SphI	GCATGC	2 cut(s)	1726, 2546
SspI	AATATT	1 cut(s)	1438
SspMI	CTAG	3 cut(s)	842, 1077, 2073
StyD4I	CCNGG	4 cut(s)	240, 650, 684, 2771
StyI	CCWWGG	5 cut(s)	120, 543, 1758, 2109, 2253
TaaI	ACNGT	6 cut(s)	775, 785, 889, 895, 1433, 2556
TaiI	ACGT	2 cut(s)	353, 2586
TaqI	TCGA	7 cut(s)	195, 204, 716, 854, 1535, 1882, 2237
TatI	WGTACW	4 cut(s)	459, 775, 1163, 2677
TauI	GCSGC	5 cut(s)	230, 455, 483, 486, 581
TfiI	GAWTC	6 cut(s)	21, 989, 1031, 1139, 2599, 2778
Tru1I	TTAA	2 cut(s)	669, 1575
Tru9I	TTAA	2 cut(s)	669, 1575
TscAI	CASTG	3 cut(s)	714, 898, 1554
TseFI	GTSAC	2 cut(s)	889, 2121
Tsp45I	GTSAC	2 cut(s)	889, 2121
TspDTI	ATGAA	7 cut(s)	1002, 1535, 1726, 2259, 2535, 2673, 2706
TspGWI	ACGGA	3 cut(s)	1539, 1650, 1947
TspRI	CASTG	3 cut(s)	714, 898, 1554
Van91I	CCANNNNNTGG	1 cut(s)	1019
VpaK11BI	GGWCC	6 cut(s)	14, 616, 2105, 2288, 2495, 2633
VspI	ATTAAT	1 cut(s)	1575
XagI	CCTNNNNNAGG	1 cut(s)	689
XapI	RAATTY	4 cut(s)	1238, 1928, 1953, 2683
XbaI	TCTAGA	1 cut(s)	2072
XceI	RCATGY	4 cut(s)	1726, 2038, 2546, 2798
XcmI	CCANNNNNNNNNTGG	3 cut(s)	445, 1765, 2721
XhoI	CTCGAG	2 cut(s)	203, 1534
XmiI	GTMKAC	2 cut(s)	1300, 2450
XmnI	GAANNNNTTC	3 cut(s)	1404, 1993, 2262
XspI	CTAG	3 cut(s)	842, 1077, 2073
ZraI	GACGTC	1 cut(s)	2584
ZrmI	AGTACT	3 cut(s)	461, 1165, 2679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.