Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011122

Physical Location & Seq

Genomic Coordinates Reverse (-)

61053530 .. 61057946

Gene Structure 4417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2811 bp

ATGAGTTTCGCAGGACCCAGAATCTCAAAACCCACAAAACCTCCAAACTCAACACCCCCACAAAACCAGCTCACCCCATCTTCAAGGTCTTCTTCTTCTTCTCTCTCCTCCCACCTCGCCATGGTGGAACTCAAGCAGAGGATCCTCACCTCCCTCTCCAAACTCTCCGACCGCGACACCTACCAAATCGCCGTCGAAGATCTCGAGAAAATAATCCAGACCCTCCCCGCCGACGGCCTCCCGGTGCTCCTCAACTGCCTCTACGACGCCTCCGCCGACCCCAAACCCGCCGTCAAGAAAGAGTCTCTACGCCTCCTCGCATTGCTCTCCTCCTCCCACCCCGATTTCACGTCCACCCACCTCACAAAGATCATCTCCCACATCGTCAAACGCCTCAAGGACGCCGACTCCGGCGTCAGGGACGCGTGTCGCGACGCCATTGGGGCGCTGGCGGCGCAGTACTTGAAGGGGGAGAGCGGCGGCGACAATGTTGGGTCGGCGGTGGTGGGGTTGTTTGTGAAGCCGTTGTTTGAGGCTATGGGGGAGCAGAACAAAGGGGTGCAATCCGGTGCGGCCGTGTGTATGGCTAAGATTGTGGACTCGGCTTCCGACCCTCCTGTCCCTGCTTTTCAGAAGCTCTGTCCCAGGATCTGTAAGCTGCTTAACAATCCTAACTTCCTGGCTAAGGCTTCGCTGTTGCCCGTGGTTTCGAGCTTGTCTCAGGTTGGAGCGGTAGCACCGCAAAGCTTGGATAATTTGCTGCCAACTGTACATGACTGTCTCGGAAGTCCAGATTGGGCAACGCGTAAAGCAGCAGCTGATGTGCTCATTGCACTAGCATTGCATTTGAGTAACTTGATCACAGATAGAGCCGCTTCCACAGTCACTGTGCTTGAGTCTTGCCGGTTTGACAAGTCGATGGTTATGGGTGATCCTTTGATAAATGTTGACAATTCTTTTGCATCAATGAAGAATTACATGGGGAGTGGGTGGGTTTTCATCAGACACATTAGTCTGCCAATTCAGCTTCAAATATTATCGCTGAAATCTGGCACTATTGATATGCAAATTATAAGCATTGCAGTTTTGGAAAAAGATTGCGGGGGAGATGACTCTCCAAAAGAGCAGAAAACCCCATCTCATGGAAATCCTGAATCAGCTGAGGTTTCAGAAAGGAATGAGCCAAAAGTTTCAAAGCCTAGTGAGAAAACAGAACAAGCAGCAAAGGTTGCATCTAATGGTTCTTCCCCTACTTCAGATTCTGTTTCTAAAGCCAAAGGTAGTACTATTCCAGATAAAGCTGTTGGACTTCTGAAGAAGAAACCGCCTGTCTTGACTGACAAAGAGCTAAACCCAGAATTCTTCCAGAAACTTGAAAGGGGTTCTGGCGAGTTGCCTGTAGAGGTAGTTGTTCCTCGTAGACATCTCAATACTTCAAACTCAAGTAACGAGGTAGAAACAGAGTCAAATGCTATGGACTCAAAGGAAAGGTCAAACAACATTGGAAGCAGCCATTCAGAAGATTTTCGTGGATCTTTCAATAGTAAATACCGTAATATTGAGAGAGGAATTGCTGGTCTGTATTCTAAACAAAGAGATCATGATGACTTGGCACGGGATAAATGGGCAGAAGAAAGAATGAATGGAAAAGACTCGAGAATGAGAGCAGTGGATGTTGATGATAGGACTGATATTAATCAAAGGGAGTCATCCAGCAGTCGTGCAGGGTTCTCTAAAACTGATGGCCAATCTGACGGAGCCTTCGCCAATAGCAAAGGAAATTGGGTAAGGGGCCTTGAGAGAATTGTGGAAGACATGGCACGGGATTTATCAATAACTTCAGGTAGGAGAGGTGGTAATTTTGCGATGGGGTTTGAGGGATCTAATCGACAACTAGGCAAGTATAATGGTTTCCCTGATTATGCGAGTGCCAAATTTGGAAGAGGTGGTGATGGACGAATTCCGTTTGGGGAAAGATATTCTCAAACTGATGGAATTGTTTCAGACATGAGGGGAAGGGGCCCTTCTTGGAGATCTGACATGTCCGAGGTGTGGGATTTTGCTACATATGGTGGTTCTAGAAATGGGCAGAGGAAGGCTGTTGGTGGTGGTCCCATGGATGTTAGGTCACCCAAGTCGGAAAATGGAAGTGATCATGGTGGCAGCAGGCGGGCATGGGAGAAAGGGAGTGGACTTCTCAGGTTTGGTGAGGGGCCTTCTGCAAGAAGTGTCTGGCAAGCATCAAAAGATGAAGCTACCTTGGAAGCAATTCGTGTGGCCGGAGAGGATAATGGACCATCAAGAACAGCAAGAGTAGCTATGCCTGAATTGACTGCAGAGGCTCTGGGAGATGATAGTGTTGGCCAAGATCGGGATCCAATCTGGACTTCTTGGACTAATGCAATGGATGCTTTTCAAGTGGGTGATATGGATACAGCCTATGCAGAAGTATTGTCAACAGGAGATGATCTCTTACTTGTAAAACTAATGGATAGATCAGGTCCTGTGATTGACCAACTTTCAAATGAAACAGCAACCGAGGTCTTGCATGCGGTTGGACAGTTTTTACCAGAGCAAAACTTGTTTGATGTCTGCCTGTCTTGGATTCAGCAGTTGGTTGAAATAGTGCTGGAAAATGGACCTGACGTCCTCGGCATTCCAAATGAAGTAAGGAAGGAGATGGTACTGAATTTGCATGAAGCTTCTGTAGCAATGGATCCACCTGAGGACTGGGAGGGTGCAATGCCTGATCAACTATTGCTGCAGTTGGCATCCACCTGGGGAATCAATCTGCAACAACATGCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0010031 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0030863 GO:0030981 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050879 GO:0055028 GO:0060560 GO:0071840 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

936

Amino Acids

101.29

Weight (kDa)

5.55

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOR1L1_N	PF24714	42 - 305	1.9e-111	TORTIFOLIA1 N-terminal
TOR1L1_C	PF24713	794 - 927	2.3e-66	TORTIFOLIA1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27060
fragaria_vesca	FvH4_3g22240
malus_domestica	MD03G1206600.v1.1 MD11G1222000.v1.1
prunus_persica	Prupe.4G209400_v2.0.a1 Prupe.4G209400_v2.0.a1
pyrus_communis	pycom03g15640 pycom11g19580
rosa_chinensis	RchiOBHm_Chr5g0038291
rosa_laevigata	RLG00000033844
rosa_multiflora	Rmu_sc0000764.1_g000003 Rmu_sc0003858.1_g000004 Rmu_sc0035524.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042730
rosa_rugosa	Rorug05G0171800
rosa_samantha	Rh5AG259100 Rh5BG262900 Rh5CG295300 Rh5DG271900
rosa_wichuraiana	Rw5G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1073
AasI	GACNNNNNNGTC	3 cut(s)	413, 617, 1011
AatII	GACGTC	1 cut(s)	2649
AccB7I	CCANNNNNTGG	1 cut(s)	1142
AccBSI	CCGCTC	2 cut(s)	477, 731
AccI	GTMKAC	1 cut(s)	1420
AccII	CGCG	4 cut(s)	174, 425, 432, 805
AcoI	YGGCCR	4 cut(s)	573, 1744, 2277, 2362
AcsI	RAATTY	4 cut(s)	1358, 1934, 1959, 2689
AcuI	CTGAAG	3 cut(s)	1239, 1334, 1824
AcyI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2646
AfaI	GTAC	4 cut(s)	461, 771, 1285, 2685
AfiI	CCNNNNNNNGG	7 cut(s)	121, 233, 417, 685, 1142, 2052, 2371
AflIII	ACRYGT	3 cut(s)	423, 803, 2040
AhdI	GACNNNNNGTC	1 cut(s)	2645
AjiI	CACGTC	1 cut(s)	351
AjnI	CCWGG	3 cut(s)	644, 678, 2777
AjuI	GAANNNNNNNTTGG	4 cut(s)	778, 810, 2371, 2403
Alw21I	GWGCWC	2 cut(s)	249, 828
Alw26I	GTCTC	3 cut(s)	309, 723, 785
AlwNI	CAGNNNCTG	5 cut(s)	651, 818, 887, 1262, 2504
Ama87I	CYCGRG	2 cut(s)	203, 1654
AoxI	GGCC	8 cut(s)	235, 573, 1744, 1792, 2020, 2213, 2277, 2362
ApaI	GGGCCC	1 cut(s)	2024
ApeKI	GCWGC	8 cut(s)	658, 760, 812, 815, 1220, 1509, 2163, 2761
ApoI	RAATTY	4 cut(s)	1358, 1934, 1959, 2689
ArsI	GACNNNNNNTTYG	8 cut(s)	276, 308, 941, 973, 1475, 1507, 1745, 1777
AseI	ATTAAT	1 cut(s)	1695
Asp700I	GAANNNNTTC	3 cut(s)	1524, 1999, 2268
AspLEI	GCGC	2 cut(s)	448, 457
AspS9I	GGNCC	9 cut(s)	14, 1792, 2020, 2021, 2111, 2213, 2294, 2501, 2639
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	7 cut(s)	64, 139, 941, 1961, 2121, 2219, 2435
AvaI	CYCGRG	2 cut(s)	203, 1654
AvaII	GGWCC	5 cut(s)	14, 2111, 2294, 2501, 2639
AxyI	CCTNAGG	1 cut(s)	2724
BaeGI	GKGCMC	1 cut(s)	2024
BalI	TGGCCA	2 cut(s)	1746, 2364
BamHI	GGATCC	3 cut(s)	141, 2374, 2716
BanII	GRGCYC	1 cut(s)	2024
BbsI	GAAGAC	2 cut(s)	81, 1818
Bbv12I	GWGCWC	2 cut(s)	249, 828
BbvCI	CCTCAGC	1 cut(s)	1161
BbvI	GCAGC	8 cut(s)	645, 747, 824, 827, 1232, 1521, 2175, 2748
BccI	CCATC	9 cut(s)	85, 913, 1144, 1736, 1861, 1946, 1985, 2305, 2674
BceAI	ACGGC	5 cut(s)	176, 250, 275, 508, 560
BciT130I	CCWGG	3 cut(s)	646, 680, 2779
BciVI	GTATCC	1 cut(s)	2425
BclI	TGATCA	3 cut(s)	858, 2152, 2749
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	3 cut(s)	309, 723, 785
BfaI	CTAG	4 cut(s)	836, 1200, 1895, 2079
BfmI	CTRYAG	4 cut(s)	1398, 2334, 2706, 2762
BfoI	RGCGCY	1 cut(s)	449
BfuI	GTATCC	1 cut(s)	2425
BglI	GCCNNNNNGGC	1 cut(s)	443
BglII	AGATCT	2 cut(s)	199, 2033
BmcAI	AGTACT	2 cut(s)	461, 1285
Bme1390I	CCNGG	4 cut(s)	242, 646, 680, 2779
Bme18I	GGWCC	5 cut(s)	14, 2111, 2294, 2501, 2639
BmeRI	GACNNNNNGTC	1 cut(s)	2645
BmeT110I	CYCGRG	2 cut(s)	203, 1654
BmgBI	CACGTC	1 cut(s)	351
BmgT120I	GGNCC	9 cut(s)	14, 1792, 2020, 2021, 2111, 2213, 2294, 2501, 2639
BmrFI	CCNGG	4 cut(s)	242, 646, 680, 2779
BmrI	ACTGGG	1 cut(s)	2740
BmsI	GCATC	5 cut(s)	971, 1241, 2249, 2398, 2780
BmuI	ACTGGG	1 cut(s)	2740
BoxI	GACNNNNGTC	1 cut(s)	426
BpiI	GAAGAC	2 cut(s)	81, 1818
BplI	GAGNNNNNCTC	4 cut(s)	703, 735, 2454, 2486
Bpu10I	CCTNAGC	2 cut(s)	684, 1161
BpuEI	CTTGAG	5 cut(s)	116, 380, 914, 1426, 1817
BpuMI	CCSGG	1 cut(s)	242
BsaBI	GATNNNNATC	2 cut(s)	1695, 2373
BsaHI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2646
BsaJI	CCNNGG	9 cut(s)	120, 644, 702, 2046, 2115, 2259, 2538, 2650, 2778
BsaWI	WCCGGW	1 cut(s)	566
BsaXI	ACNNNNNCTCC	8 cut(s)	25, 55, 254, 284, 392, 422, 1840, 1870
Bsc4I	CCNNNNNNNGG	7 cut(s)	121, 233, 417, 685, 1142, 2052, 2371
Bse118I	RCCGGY	1 cut(s)	903
Bse1I	ACTGG	1 cut(s)	2735
Bse21I	CCTNAGG	1 cut(s)	2724
Bse3DI	GCAATG	7 cut(s)	320, 828, 839, 1077, 2409, 2718, 2748
Bse8I	GATNNNNATC	2 cut(s)	1695, 2373
BseBI	CCWGG	3 cut(s)	646, 680, 2779
BseDI	CCNNGG	9 cut(s)	120, 644, 702, 2046, 2115, 2259, 2538, 2650, 2778
BseGI	GGATG	5 cut(s)	1678, 1709, 2125, 2413, 2771
BseJI	GATNNNNATC	2 cut(s)	1695, 2373
BseLI	CCNNNNNNNGG	7 cut(s)	121, 233, 417, 685, 1142, 2052, 2371
BseMI	GCAATG	7 cut(s)	320, 828, 839, 1077, 2409, 2718, 2748
BseMII	CTCAG	4 cut(s)	734, 1152, 2212, 2715
BseNI	ACTGG	1 cut(s)	2735
BseRI	GAGGAG	5 cut(s)	97, 239, 305, 319, 322
BseSI	GKGCMC	1 cut(s)	2024
BseX3I	CGGCCG	1 cut(s)	573
BseXI	GCAGC	8 cut(s)	645, 747, 824, 827, 1232, 1521, 2175, 2748
BsgI	GTGCAG	1 cut(s)	1743
Bsh1236I	CGCG	4 cut(s)	174, 425, 432, 805
Bsh1285I	CGRYCG	2 cut(s)	172, 576
BshFI	GGCC	8 cut(s)	237, 575, 1746, 1794, 2022, 2215, 2279, 2364
BsiEI	CGRYCG	2 cut(s)	172, 576
BsiHKAI	GWGCWC	2 cut(s)	249, 828
BsiHKCI	CYCGRG	2 cut(s)	203, 1654
BsiSI	CCGG	5 cut(s)	242, 411, 567, 904, 2280
BslFI	GGGAC	4 cut(s)	434, 605, 627, 2097
BslI	CCNNNNNNNGG	7 cut(s)	121, 233, 417, 685, 1142, 2052, 2371
BsmAI	GTCTC	3 cut(s)	309, 723, 785
BsmFI	GGGAC	4 cut(s)	434, 605, 627, 2097
BsmI	GAATGC	1 cut(s)	2655
BsnI	GGCC	8 cut(s)	237, 575, 1746, 1794, 2022, 2215, 2279, 2364
BsoBI	CYCGRG	2 cut(s)	203, 1654
Bsp120I	GGGCCC	1 cut(s)	2020
Bsp1286I	GDGCHC	3 cut(s)	249, 828, 2024
Bsp1407I	TGTACA	1 cut(s)	769
Bsp19I	CCATGG	2 cut(s)	120, 2115
Bsp68I	TCGCGA	1 cut(s)	432
BspANI	GGCC	8 cut(s)	237, 575, 1746, 1794, 2022, 2215, 2279, 2364
BspCNI	CTCAG	4 cut(s)	733, 1153, 2211, 2716
BspFNI	CGCG	4 cut(s)	174, 425, 432, 805
BspHI	TCATGA	1 cut(s)	1600
BspMAI	CTGCAG	2 cut(s)	2338, 2766
BsrBI	CCGCTC	2 cut(s)	477, 731
BsrDI	GCAATG	7 cut(s)	320, 828, 839, 1077, 2409, 2718, 2748
BsrFI	RCCGGY	1 cut(s)	903
BsrGI	TGTACA	1 cut(s)	769
BsrI	ACTGG	1 cut(s)	2735
BssAI	RCCGGY	1 cut(s)	903
BssECI	CCNNGG	9 cut(s)	120, 644, 702, 2046, 2115, 2259, 2538, 2650, 2778
BssNI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2646
BssT1I	CCWWGG	3 cut(s)	120, 2115, 2259
Bst2UI	CCWGG	3 cut(s)	646, 680, 2779
Bst4CI	ACNGT	6 cut(s)	769, 779, 883, 889, 1553, 2562
Bst6I	CTCTTC	1 cut(s)	1936
BstACI	GRCGYC	5 cut(s)	267, 402, 414, 435, 2646
BstAPI	GCANNNNNTGC	2 cut(s)	1229, 2408
BstAUI	TGTACA	1 cut(s)	769
BstC8I	GCNNGC	5 cut(s)	450, 2168, 2172, 2238, 2550
BstDEI	CTNAG	6 cut(s)	588, 684, 720, 1161, 2198, 2724
BstDSI	CCRYGG	3 cut(s)	120, 702, 2115
BstEII	GGTNACC	1 cut(s)	2127
BstENI	CCTNNNNNAGG	1 cut(s)	683
BstF5I	GGATG	5 cut(s)	1678, 1709, 2125, 2413, 2771
BstFNI	CGCG	4 cut(s)	174, 425, 432, 805
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	2 cut(s)	448, 457
BstMAI	GTCTC	3 cut(s)	309, 723, 785
BstMCI	CGRYCG	2 cut(s)	172, 576
BstMWI	GCNNNNNNNGC	8 cut(s)	443, 452, 454, 1024, 1229, 2315, 2408, 2708
BstNI	CCWGG	3 cut(s)	646, 680, 2779
BstNSI	RCATGY	3 cut(s)	2044, 2552, 2804
BstPAI	GACNNNNGTC	1 cut(s)	426
BstPI	GGTNACC	1 cut(s)	2127
BstSCI	CCNGG	4 cut(s)	240, 644, 678, 2777
BstSFI	CTRYAG	4 cut(s)	1398, 2334, 2706, 2762
BstSLI	GKGCMC	1 cut(s)	2024
BstUI	CGCG	4 cut(s)	174, 425, 432, 805
BstV1I	GCAGC	8 cut(s)	645, 747, 824, 827, 1232, 1521, 2175, 2748
BstV2I	GAAGAC	2 cut(s)	81, 1818
BstX2I	RGATCY	8 cut(s)	141, 199, 648, 1532, 1880, 2033, 2374, 2716
BstYI	RGATCY	8 cut(s)	141, 199, 648, 1532, 1880, 2033, 2374, 2716
BstZI	CGGCCG	1 cut(s)	573
Bsu36I	CCTNAGG	1 cut(s)	2724
BsuI	GTATCC	1 cut(s)	2425
BsuRI	GGCC	8 cut(s)	237, 575, 1746, 1794, 2022, 2215, 2279, 2364
BtgI	CCRYGG	3 cut(s)	120, 702, 2115
BtgZI	GCGATG	1 cut(s)	1880
BtrI	CACGTC	1 cut(s)	351
BtsCI	GGATG	5 cut(s)	1678, 1709, 2125, 2413, 2771
BtsI	GCAGTG	1 cut(s)	1674
BtsIMutI	CAGTG	2 cut(s)	885, 1674
BtuMI	TCGCGA	1 cut(s)	432
Cac8I	GCNNGC	5 cut(s)	450, 2168, 2172, 2238, 2550
CaiI	CAGNNNCTG	5 cut(s)	651, 818, 887, 1262, 2504
CciI	TCATGA	1 cut(s)	1600
CfoI	GCGC	2 cut(s)	448, 457
Cfr10I	RCCGGY	1 cut(s)	903
Cfr13I	GGNCC	9 cut(s)	14, 1792, 2020, 2021, 2111, 2213, 2294, 2501, 2639
CseI	GACGC	5 cut(s)	275, 403, 410, 431, 443
Csp6I	GTAC	4 cut(s)	460, 770, 1284, 2684
CspCI	CAANNNNNGTGG	2 cut(s)	2256, 2291
CviQI	GTAC	4 cut(s)	460, 770, 1284, 2684
DdeI	CTNAG	6 cut(s)	588, 684, 720, 1161, 2198, 2724
DrdI	GACNNNNNNGTC	3 cut(s)	413, 617, 1011
DriI	GACNNNNNGTC	1 cut(s)	2645
DseDI	GACNNNNNNGTC	3 cut(s)	413, 617, 1011
EaeI	YGGCCR	4 cut(s)	573, 1744, 2277, 2362
EagI	CGGCCG	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	1936
Eam1105I	GACNNNNNGTC	1 cut(s)	2645
EarI	CTCTTC	1 cut(s)	1936
EciI	GGCGGA	1 cut(s)	262
EclXI	CGGCCG	1 cut(s)	573
Eco130I	CCWWGG	3 cut(s)	120, 2115, 2259
Eco24I	GRGCYC	1 cut(s)	2024
Eco47I	GGWCC	5 cut(s)	14, 2111, 2294, 2501, 2639
Eco52I	CGGCCG	1 cut(s)	573
Eco57I	CTGAAG	3 cut(s)	1239, 1334, 1824
Eco81I	CCTNAGG	1 cut(s)	2724
Eco88I	CYCGRG	2 cut(s)	203, 1654
Eco91I	GGTNACC	1 cut(s)	2127
EcoNI	CCTNNNNNAGG	1 cut(s)	683
EcoO109I	RGGNCCY	6 cut(s)	14, 1792, 2020, 2021, 2213, 2501
EcoO65I	GGTNACC	1 cut(s)	2127
EcoRI	GAATTC	2 cut(s)	1358, 1959
EcoRII	CCWGG	3 cut(s)	644, 678, 2777
EcoT14I	CCWWGG	3 cut(s)	120, 2115, 2259
EcoT38I	GRGCYC	1 cut(s)	2024
ErhI	CCWWGG	3 cut(s)	120, 2115, 2259
FalI	AAGNNNNNCTT	4 cut(s)	76, 108, 2008, 2040
FaqI	GGGAC	4 cut(s)	434, 605, 627, 2097
FauI	CCCGC	4 cut(s)	235, 295, 1094, 2163
FauNDI	CATATG	1 cut(s)	2068
FbaI	TGATCA	3 cut(s)	858, 2152, 2749
FblI	GTMKAC	1 cut(s)	1420
FokI	GGATG	5 cut(s)	1685, 1696, 2132, 2420, 2758
FriOI	GRGCYC	1 cut(s)	2024
FspBI	CTAG	4 cut(s)	836, 1200, 1895, 2079
GlaI	GCGC	2 cut(s)	447, 456
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	8 cut(s)	237, 575, 1746, 1794, 2022, 2215, 2279, 2364
HapII	CCGG	5 cut(s)	242, 411, 567, 904, 2280
HgaI	GACGC	5 cut(s)	275, 403, 410, 431, 443
HhaI	GCGC	2 cut(s)	448, 457
Hin1I	GRCGYC	5 cut(s)	267, 402, 414, 435, 2646
Hin6I	GCGC	2 cut(s)	446, 455
HinP1I	GCGC	2 cut(s)	446, 455
HincII	GTYRAC	2 cut(s)	949, 2457
HindII	GTYRAC	2 cut(s)	949, 2457
HindIII	AAGCTT	2 cut(s)	745, 2700
HpaII	CCGG	5 cut(s)	242, 411, 567, 904, 2280
HphI	GGTGA	7 cut(s)	64, 139, 941, 1961, 2121, 2219, 2435
Hpy166II	GTNNAC	6 cut(s)	354, 598, 949, 1421, 2192, 2457
Hpy8I	GTNNAC	6 cut(s)	354, 598, 949, 1421, 2192, 2457
Hpy99I	CGWCG	4 cut(s)	197, 236, 269, 437
HpyAV	CCTTC	7 cut(s)	460, 1771, 2010, 2034, 2089, 2226, 2668
HpyCH4III	ACNGT	6 cut(s)	769, 779, 883, 889, 1553, 2562
HpyCH4IV	ACGT	2 cut(s)	350, 2646
HpyF10VI	GCNNNNNNNGC	8 cut(s)	443, 452, 454, 1024, 1229, 2315, 2408, 2708
HpyF3I	CTNAG	6 cut(s)	588, 684, 720, 1161, 2198, 2724
HpySE526I	ACGT	2 cut(s)	350, 2646
Hsp92I	GRCGYC	5 cut(s)	267, 402, 414, 435, 2646
HspAI	GCGC	2 cut(s)	446, 455
Ksp22I	TGATCA	3 cut(s)	858, 2152, 2749
LmnI	GCTCC	4 cut(s)	252, 544, 728, 1757
Lsp1109I	GCAGC	8 cut(s)	645, 747, 824, 827, 1232, 1521, 2175, 2748
LweI	GCATC	5 cut(s)	971, 1241, 2249, 2398, 2780
MaeI	CTAG	4 cut(s)	836, 1200, 1895, 2079
MaeII	ACGT	2 cut(s)	350, 2646
MaeIII	GTNAC	4 cut(s)	851, 883, 1445, 2127
MbiI	CCGCTC	2 cut(s)	477, 731
MflI	RGATCY	8 cut(s)	141, 199, 648, 1532, 1880, 2033, 2374, 2716
MhlI	GDGCHC	3 cut(s)	249, 828, 2024
MlsI	TGGCCA	2 cut(s)	1746, 2364
MluI	ACGCGT	2 cut(s)	423, 803
MluNI	TGGCCA	2 cut(s)	1746, 2364
MlyI	GAGTC	9 cut(s)	311, 401, 593, 905, 1106, 1472, 1472, 1646, 1715
MmeI	TCCRAC	6 cut(s)	192, 633, 706, 1285, 2118, 2536
Mox20I	TGGCCA	2 cut(s)	1746, 2364
MroXI	GAANNNNTTC	3 cut(s)	1524, 1999, 2268
MscI	TGGCCA	2 cut(s)	1746, 2364
MseI	TTAA	2 cut(s)	663, 1695
Msp20I	TGGCCA	2 cut(s)	1746, 2364
MspA1I	CMGCKG	2 cut(s)	818, 1160
MspI	CCGG	5 cut(s)	242, 411, 567, 904, 2280
MspR9I	CCNGG	4 cut(s)	242, 646, 680, 2779
Mva1269I	GAATGC	1 cut(s)	2655
MvaI	CCWGG	3 cut(s)	646, 680, 2779
MvnI	CGCG	4 cut(s)	174, 425, 432, 805
MwoI	GCNNNNNNNGC	8 cut(s)	443, 452, 454, 1024, 1229, 2315, 2408, 2708
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	2 cut(s)	120, 2115
NdeI	CATATG	1 cut(s)	2068
NmeAIII	GCCGAG	2 cut(s)	581, 2631
NmuCI	GTSAC	2 cut(s)	883, 2127
NruI	TCGCGA	1 cut(s)	432
NspI	RCATGY	3 cut(s)	2044, 2552, 2804
PaeI	GCATGC	1 cut(s)	2552
PaeR7I	CTCGAG	2 cut(s)	203, 1654
PagI	TCATGA	1 cut(s)	1600
PciI	ACATGT	1 cut(s)	2040
PcsI	WCGNNNNNNNCGW	3 cut(s)	201, 273, 429
PctI	GAATGC	1 cut(s)	2655
PdmI	GAANNNNTTC	3 cut(s)	1524, 1999, 2268
PfeI	GAWTC	5 cut(s)	21, 1154, 1259, 2605, 2784
PflMI	CCANNNNNTGG	1 cut(s)	1142
PleI	GAGTC	9 cut(s)	310, 401, 593, 904, 1106, 1471, 1472, 1646, 1714
PpsI	GAGTC	9 cut(s)	310, 401, 593, 904, 1106, 1471, 1472, 1646, 1714
PpuMI	RGGWCCY	2 cut(s)	14, 2501
PscI	ACATGT	1 cut(s)	2040
PshAI	GACNNNNGTC	1 cut(s)	426
PshBI	ATTAAT	1 cut(s)	1695
PsiI	TTATAA	1 cut(s)	1073
Psp5II	RGGWCCY	2 cut(s)	14, 2501
Psp6I	CCWGG	3 cut(s)	644, 678, 2777
PspEI	GGTNACC	1 cut(s)	2127
PspGI	CCWGG	3 cut(s)	644, 678, 2777
PspOMI	GGGCCC	1 cut(s)	2020
PspPI	GGNCC	9 cut(s)	14, 1792, 2020, 2021, 2111, 2213, 2294, 2501, 2639
PspPPI	RGGWCCY	2 cut(s)	14, 2501
PstI	CTGCAG	2 cut(s)	2338, 2766
PstNI	CAGNNNCTG	5 cut(s)	651, 818, 887, 1262, 2504
PsuI	RGATCY	8 cut(s)	141, 199, 648, 1532, 1880, 2033, 2374, 2716
PvuII	CAGCTG	2 cut(s)	818, 1160
RruI	TCGCGA	1 cut(s)	432
RsaI	GTAC	4 cut(s)	461, 771, 1285, 2685
RsaNI	GTAC	4 cut(s)	460, 770, 1284, 2684
SaqAI	TTAA	2 cut(s)	663, 1695
Sau96I	GGNCC	9 cut(s)	14, 1792, 2020, 2021, 2111, 2213, 2294, 2501, 2639
ScaI	AGTACT	2 cut(s)	461, 1285
SchI	GAGTC	9 cut(s)	311, 401, 593, 905, 1106, 1472, 1472, 1646, 1715
ScrFI	CCNGG	4 cut(s)	242, 646, 680, 2779
SduI	GDGCHC	3 cut(s)	249, 828, 2024
SfaNI	GCATC	5 cut(s)	971, 1241, 2249, 2398, 2780
SfcI	CTRYAG	4 cut(s)	1398, 2334, 2706, 2762
Sfr274I	CTCGAG	2 cut(s)	203, 1654
SinI	GGWCC	5 cut(s)	14, 2111, 2294, 2501, 2639
SlaI	CTCGAG	2 cut(s)	203, 1654
SmlI	CTYRAG	7 cut(s)	131, 203, 395, 893, 1441, 1654, 1796
SmoI	CTYRAG	7 cut(s)	131, 203, 395, 893, 1441, 1654, 1796
SphI	GCATGC	1 cut(s)	2552
SspI	AATATT	2 cut(s)	1035, 1558
SspMI	CTAG	4 cut(s)	836, 1200, 1895, 2079
StyD4I	CCNGG	4 cut(s)	240, 644, 678, 2777
StyI	CCWWGG	3 cut(s)	120, 2115, 2259
TaaI	ACNGT	6 cut(s)	769, 779, 883, 889, 1553, 2562
TaiI	ACGT	2 cut(s)	353, 2649
TaqI	TCGA	6 cut(s)	195, 204, 710, 917, 1655, 1888
TatI	WGTACW	3 cut(s)	459, 769, 1283
TauI	GCSGC	5 cut(s)	455, 480, 483, 575, 875
TfiI	GAWTC	5 cut(s)	21, 1154, 1259, 2605, 2784
Tru1I	TTAA	2 cut(s)	663, 1695
Tru9I	TTAA	2 cut(s)	663, 1695
TscAI	CASTG	2 cut(s)	892, 1674
TseFI	GTSAC	2 cut(s)	883, 2127
TseI	GCWGC	8 cut(s)	658, 760, 812, 815, 1220, 1509, 2163, 2761
Tsp45I	GTSAC	2 cut(s)	883, 2127
TspDTI	ATGAA	7 cut(s)	983, 988, 1655, 2265, 2541, 2679, 2712
TspGWI	ACGGA	2 cut(s)	1770, 1953
TspRI	CASTG	2 cut(s)	892, 1674
Van91I	CCANNNNNTGG	1 cut(s)	1142
VpaK11BI	GGWCC	5 cut(s)	14, 2111, 2294, 2501, 2639
VspI	ATTAAT	1 cut(s)	1695
XagI	CCTNNNNNAGG	1 cut(s)	683
XapI	RAATTY	4 cut(s)	1358, 1934, 1959, 2689
XbaI	TCTAGA	1 cut(s)	2078
XceI	RCATGY	3 cut(s)	2044, 2552, 2804
XcmI	CCANNNNNNNNNTGG	2 cut(s)	445, 2727
XhoI	CTCGAG	2 cut(s)	203, 1654
XmiI	GTMKAC	1 cut(s)	1420
XmnI	GAANNNNTTC	3 cut(s)	1524, 1999, 2268
XspI	CTAG	4 cut(s)	836, 1200, 1895, 2079
ZraI	GACGTC	1 cut(s)	2647
ZrmI	AGTACT	2 cut(s)	461, 1285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.