Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G75010 |
| fragaria_vesca | FvH4_4g36030 FvH4_4g36030 FvH4_4g36030 FvH4_4g36030 FvH4_4g36030 FvH4_4g36030 |
| malus_domestica | MD16G1009700.v1.1 |
| prunus_persica | Prupe.1G340900_v2.0.a1 Prupe.1G340900_v2.0.a1 |
| pyrus_communis | pycom16g00950 |
| rosa_chinensis | RchiOBHm_Chr4g0445651 |
| rosa_laevigata | RLG00000005721 |
| rosa_multiflora | Rmu_sc0003637.1_g000022 Rmu_sc0019383.1_g000004 Rmu_sc0038035.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00386130 |
| rosa_rugosa | Rorug04G0363700 Rorug04G0363800 |
| rosa_samantha | Rh4AG425300 Rh4CG451600 Rh4DG433600 |
| rosa_wichuraiana | Rw4G036430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1568 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1384 |
| Acc36I | ACCTGC | 1 cut(s) | 924 |
| AccI | GTMKAC | 1 cut(s) | 1005 |
| AciI | CCGC | 4 cut(s) | 2, 69, 268, 1282 |
| AclWI | GGATC | 6 cut(s) | 187, 290, 692, 1212, 1237, 1872 |
| AcsI | RAATTY | 3 cut(s) | 429, 1186, 1715 |
| AcuI | CTGAAG | 5 cut(s) | 400, 1085, 1169, 1274, 1769 |
| AcyI | GRCGYC | 2 cut(s) | 77, 381 |
| AfaI | GTAC | 3 cut(s) | 800, 1490, 1830 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 390, 726, 1162, 1274, 1618 |
| AflIII | ACRYGT | 1 cut(s) | 455 |
| AjnI | CCWGG | 1 cut(s) | 1859 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 638, 670, 1727, 1759 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 91, 123 |
| AluBI | AGCT | 6 cut(s) | 365, 891, 1095, 1126, 1360, 1498 |
| AluI | AGCT | 6 cut(s) | 365, 891, 1095, 1126, 1360, 1498 |
| Alw26I | GTCTC | 5 cut(s) | 125, 372, 1418, 1443, 1456 |
| AlwI | GGATC | 6 cut(s) | 187, 290, 692, 1212, 1237, 1872 |
| Ama87I | CYCGRG | 1 cut(s) | 37 |
| AoxI | GGCC | 1 cut(s) | 392 |
| ApeKI | GCWGC | 2 cut(s) | 891, 1639 |
| ApoI | RAATTY | 3 cut(s) | 429, 1186, 1715 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 67, 99 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 358, 413 |
| AspLEI | GCGC | 2 cut(s) | 219, 1805 |
| AsuHPI | GGTGA | 2 cut(s) | 1360, 1661 |
| AvaI | CYCGRG | 1 cut(s) | 37 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 521, 554 |
| BanII | GRGCYC | 1 cut(s) | 887 |
| BbsI | GAAGAC | 3 cut(s) | 218, 1508, 1735 |
| BbvI | GCAGC | 2 cut(s) | 878, 1651 |
| BccI | CCATC | 5 cut(s) | 198, 739, 1348, 1771, 1786 |
| BceAI | ACGGC | 3 cut(s) | 64, 90, 520 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 802, 836 |
| BciT130I | CCWGG | 1 cut(s) | 1861 |
| BcoDI | GTCTC | 5 cut(s) | 125, 372, 1418, 1443, 1456 |
| BfaI | CTAG | 4 cut(s) | 880, 895, 1088, 1507 |
| BfmI | CTRYAG | 1 cut(s) | 830 |
| BfoI | RGCGCY | 2 cut(s) | 220, 1806 |
| BfuAI | ACCTGC | 1 cut(s) | 924 |
| BglII | AGATCT | 1 cut(s) | 319 |
| BisI | GCNGC | 3 cut(s) | 69, 892, 1640 |
| BlpI | GCTNAGC | 1 cut(s) | 971 |
| BlsI | GCNGC | 3 cut(s) | 70, 893, 1641 |
| Bme1390I | CCNGG | 1 cut(s) | 1861 |
| BmeT110I | CYCGRG | 1 cut(s) | 37 |
| BmiI | GGNNCC | 2 cut(s) | 34, 200 |
| BmrFI | CCNGG | 1 cut(s) | 1861 |
| BmrI | ACTGGG | 1 cut(s) | 869 |
| BmuI | ACTGGG | 1 cut(s) | 869 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1541 |
| BpiI | GAAGAC | 3 cut(s) | 218, 1508, 1735 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1423, 1455 |
| BpmI | CTGGAG | 1 cut(s) | 1400 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1613 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 971 |
| BpuEI | CTTGAG | 1 cut(s) | 1567 |
| Bsa29I | ATCGAT | 1 cut(s) | 575 |
| BsaHI | GRCGYC | 2 cut(s) | 77, 381 |
| BsaI | GGTCTC | 1 cut(s) | 1418 |
| BsaJI | CCNNGG | 2 cut(s) | 1734, 1860 |
| BsaWI | WCCGGW | 1 cut(s) | 110 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 91, 121 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 390, 726, 1162, 1274, 1618 |
| Bse1I | ACTGG | 4 cut(s) | 875, 971, 1217, 1399 |
| BseBI | CCWGG | 1 cut(s) | 1861 |
| BseCI | ATCGAT | 1 cut(s) | 575 |
| BseDI | CCNNGG | 2 cut(s) | 1734, 1860 |
| BseGI | GGATG | 6 cut(s) | 580, 750, 1482, 1642, 1857, 1881 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 390, 726, 1162, 1274, 1618 |
| BseMII | CTCAG | 6 cut(s) | 712, 955, 985, 1171, 1199, 1372 |
| BseNI | ACTGG | 4 cut(s) | 875, 971, 1217, 1399 |
| BseRI | GAGGAG | 1 cut(s) | 1724 |
| BseXI | GCAGC | 2 cut(s) | 878, 1651 |
| BseYI | CCCAGC | 1 cut(s) | 1095 |
| BsgI | GTGCAG | 1 cut(s) | 1658 |
| BshFI | GGCC | 1 cut(s) | 394 |
| BshVI | ATCGAT | 1 cut(s) | 575 |
| BsiHKCI | CYCGRG | 1 cut(s) | 37 |
| BsiSI | CCGG | 2 cut(s) | 111, 177 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 390, 726, 1162, 1274, 1618 |
| BsmAI | GTCTC | 5 cut(s) | 125, 372, 1418, 1443, 1456 |
| BsmBI | CGTCTC | 2 cut(s) | 125, 372 |
| BsnI | GGCC | 1 cut(s) | 394 |
| Bso31I | GGTCTC | 1 cut(s) | 1418 |
| BsoBI | CYCGRG | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 1 cut(s) | 887 |
| Bsp1407I | TGTACA | 1 cut(s) | 798 |
| Bsp143I | GATC | 8 cut(s) | 179, 282, 319, 697, 1204, 1242, 1816, 1864 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 971 |
| BspACI | CCGC | 4 cut(s) | 2, 69, 268, 1282 |
| BspANI | GGCC | 1 cut(s) | 394 |
| BspCNI | CTCAG | 6 cut(s) | 713, 954, 984, 1170, 1200, 1373 |
| BspDI | ATCGAT | 1 cut(s) | 575 |
| BspHI | TCATGA | 2 cut(s) | 287, 867 |
| BspLI | GGNNCC | 2 cut(s) | 34, 200 |
| BspMI | ACCTGC | 1 cut(s) | 924 |
| BspPI | GGATC | 6 cut(s) | 187, 290, 692, 1212, 1237, 1872 |
| BspTNI | GGTCTC | 1 cut(s) | 1418 |
| BsrGI | TGTACA | 1 cut(s) | 798 |
| BsrI | ACTGG | 4 cut(s) | 875, 971, 1217, 1399 |
| BssECI | CCNNGG | 2 cut(s) | 1734, 1860 |
| BssMI | GATC | 8 cut(s) | 179, 282, 319, 697, 1204, 1242, 1816, 1864 |
| BssNI | GRCGYC | 2 cut(s) | 77, 381 |
| BssT1I | CCWWGG | 1 cut(s) | 1734 |
| Bst2UI | CCWGG | 1 cut(s) | 1861 |
| Bst4CI | ACNGT | 3 cut(s) | 793, 906, 1030 |
| Bst6I | CTCTTC | 2 cut(s) | 1061, 1415 |
| BstACI | GRCGYC | 2 cut(s) | 77, 381 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 511, 532 |
| BstAUI | TGTACA | 1 cut(s) | 798 |
| BstC8I | GCNNGC | 1 cut(s) | 669 |
| BstDEI | CTNAG | 8 cut(s) | 721, 915, 941, 971, 1157, 1208, 1381, 1613 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1272, 1616 |
| BstF5I | GGATG | 6 cut(s) | 580, 750, 1482, 1642, 1857, 1881 |
| BstH2I | RGCGCY | 2 cut(s) | 220, 1806 |
| BstHHI | GCGC | 2 cut(s) | 219, 1805 |
| BstKTI | GATC | 8 cut(s) | 182, 285, 322, 700, 1207, 1245, 1819, 1867 |
| BstMAI | GTCTC | 5 cut(s) | 125, 372, 1418, 1443, 1456 |
| BstMBI | GATC | 8 cut(s) | 179, 282, 319, 697, 1204, 1242, 1816, 1864 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 511, 532, 891 |
| BstNI | CCWGG | 1 cut(s) | 1861 |
| BstNSI | RCATGY | 1 cut(s) | 459 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1541 |
| BstSCI | CCNGG | 1 cut(s) | 1859 |
| BstSFI | CTRYAG | 1 cut(s) | 830 |
| BstV1I | GCAGC | 2 cut(s) | 878, 1651 |
| BstV2I | GAAGAC | 3 cut(s) | 218, 1508, 1735 |
| BstX2I | RGATCY | 3 cut(s) | 282, 319, 1204 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1679 |
| BstYI | RGATCY | 3 cut(s) | 282, 319, 1204 |
| Bsu15I | ATCGAT | 1 cut(s) | 575 |
| BsuRI | GGCC | 1 cut(s) | 394 |
| BsuTUI | ATCGAT | 1 cut(s) | 575 |
| BtsCI | GGATG | 6 cut(s) | 580, 750, 1482, 1642, 1857, 1881 |
| BtsI | GCAGTG | 1 cut(s) | 1559 |
| BtsIMutI | CAGTG | 4 cut(s) | 798, 1250, 1532, 1559 |
| BveI | ACCTGC | 1 cut(s) | 924 |
| Cac8I | GCNNGC | 1 cut(s) | 669 |
| CciI | TCATGA | 2 cut(s) | 287, 867 |
| CfoI | GCGC | 2 cut(s) | 219, 1805 |
| ClaI | ATCGAT | 1 cut(s) | 575 |
| CseI | GACGC | 2 cut(s) | 85, 389 |
| Csp6I | GTAC | 3 cut(s) | 799, 1489, 1829 |
| CviQI | GTAC | 3 cut(s) | 799, 1489, 1829 |
| DdeI | CTNAG | 8 cut(s) | 721, 915, 941, 971, 1157, 1208, 1381, 1613 |
| DpnI | GATC | 8 cut(s) | 181, 284, 321, 699, 1206, 1244, 1818, 1866 |
| DpnII | GATC | 8 cut(s) | 179, 282, 319, 697, 1204, 1242, 1816, 1864 |
| DraI | TTTAAA | 1 cut(s) | 642 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1384 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1384 |
| Eam1104I | CTCTTC | 2 cut(s) | 1061, 1415 |
| EarI | CTCTTC | 2 cut(s) | 1061, 1415 |
| Eco130I | CCWWGG | 1 cut(s) | 1734 |
| Eco24I | GRGCYC | 1 cut(s) | 887 |
| Eco31I | GGTCTC | 1 cut(s) | 1418 |
| Eco57I | CTGAAG | 5 cut(s) | 400, 1085, 1169, 1274, 1769 |
| Eco88I | CYCGRG | 1 cut(s) | 37 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1272, 1616 |
| EcoRI | GAATTC | 1 cut(s) | 1186 |
| EcoRII | CCWGG | 1 cut(s) | 1859 |
| EcoT14I | CCWWGG | 1 cut(s) | 1734 |
| EcoT22I | ATGCAT | 2 cut(s) | 582, 763 |
| EcoT38I | GRGCYC | 1 cut(s) | 887 |
| ErhI | CCWWGG | 1 cut(s) | 1734 |
| Esp3I | CGTCTC | 2 cut(s) | 125, 372 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1727, 1759 |
| FauI | CCCGC | 1 cut(s) | 261 |
| FblI | GTMKAC | 1 cut(s) | 1005 |
| Fnu4HI | GCNGC | 3 cut(s) | 69, 892, 1640 |
| FokI | GGATG | 6 cut(s) | 567, 757, 1489, 1629, 1864, 1888 |
| FriOI | GRGCYC | 1 cut(s) | 887 |
| Fsp4HI | GCNGC | 3 cut(s) | 69, 892, 1640 |
| FspBI | CTAG | 4 cut(s) | 880, 895, 1088, 1507 |
| GlaI | GCGC | 2 cut(s) | 218, 1804 |
| GluI | GCNGC | 3 cut(s) | 69, 892, 1640 |
| GsaI | CCCAGC | 1 cut(s) | 1099 |
| GsuI | CTGGAG | 1 cut(s) | 1400 |
| HaeII | RGCGCY | 2 cut(s) | 220, 1806 |
| HaeIII | GGCC | 1 cut(s) | 394 |
| HapII | CCGG | 2 cut(s) | 111, 177 |
| HgaI | GACGC | 2 cut(s) | 85, 389 |
| HhaI | GCGC | 2 cut(s) | 219, 1805 |
| Hin1I | GRCGYC | 2 cut(s) | 77, 381 |
| Hin6I | GCGC | 2 cut(s) | 217, 1803 |
| HinP1I | GCGC | 2 cut(s) | 217, 1803 |
| HinfI | GANTC | 8 cut(s) | 100, 128, 151, 1084, 1225, 1503, 1524, 1683 |
| HpaII | CCGG | 2 cut(s) | 111, 177 |
| HphI | GGTGA | 2 cut(s) | 1360, 1661 |
| Hpy166II | GTNNAC | 2 cut(s) | 12, 1006 |
| Hpy8I | GTNNAC | 2 cut(s) | 12, 1006 |
| Hpy99I | CGWCG | 5 cut(s) | 22, 58, 79, 187, 1233 |
| HpyAV | CCTTC | 7 cut(s) | 153, 364, 835, 1278, 1335, 1405, 1744 |
| HpyCH4III | ACNGT | 3 cut(s) | 793, 906, 1030 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 511, 532, 891 |
| HpyF3I | CTNAG | 8 cut(s) | 721, 915, 941, 971, 1157, 1208, 1381, 1613 |
| Hsp92I | GRCGYC | 2 cut(s) | 77, 381 |
| HspAI | GCGC | 2 cut(s) | 217, 1803 |
| Kzo9I | GATC | 8 cut(s) | 179, 282, 319, 697, 1204, 1242, 1816, 1864 |
| LmnI | GCTCC | 3 cut(s) | 204, 420, 1357 |
| Lsp1109I | GCAGC | 2 cut(s) | 878, 1651 |
| MaeI | CTAG | 4 cut(s) | 880, 895, 1088, 1507 |
| MaeIII | GTNAC | 5 cut(s) | 339, 458, 477, 897, 1043 |
| MalI | GATC | 8 cut(s) | 181, 284, 321, 699, 1206, 1244, 1818, 1866 |
| MboI | GATC | 8 cut(s) | 179, 282, 319, 697, 1204, 1242, 1816, 1864 |
| MboII | GAAGA | 8 cut(s) | 218, 1078, 1162, 1267, 1363, 1432, 1508, 1735 |
| MfeI | CAATTG | 1 cut(s) | 296 |
| MflI | RGATCY | 3 cut(s) | 282, 319, 1204 |
| MhlI | GDGCHC | 1 cut(s) | 887 |
| MlyI | GAGTC | 4 cut(s) | 109, 145, 1533, 1692 |
| MmeI | TCCRAC | 3 cut(s) | 165, 1273, 1471 |
| Mph1103I | ATGCAT | 2 cut(s) | 582, 763 |
| MroXI | GAANNNNTTC | 2 cut(s) | 358, 413 |
| MseI | TTAA | 7 cut(s) | 146, 520, 641, 853, 1121, 1136, 1169 |
| MslI | CAYNNNNRTG | 1 cut(s) | 590 |
| MspA1I | CMGCKG | 1 cut(s) | 1498 |
| MspI | CCGG | 2 cut(s) | 111, 177 |
| MspR9I | CCNGG | 1 cut(s) | 1861 |
| MunI | CAATTG | 1 cut(s) | 296 |
| MvaI | CCWGG | 1 cut(s) | 1861 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 511, 532, 891 |
| NdeII | GATC | 8 cut(s) | 179, 282, 319, 697, 1204, 1242, 1816, 1864 |
| NlaIV | GGNNCC | 2 cut(s) | 34, 200 |
| NmuCI | GTSAC | 3 cut(s) | 339, 897, 1043 |
| NsiI | ATGCAT | 2 cut(s) | 582, 763 |
| NspI | RCATGY | 1 cut(s) | 459 |
| PagI | TCATGA | 2 cut(s) | 287, 867 |
| PciI | ACATGT | 1 cut(s) | 455 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 50 |
| PdmI | GAANNNNTTC | 2 cut(s) | 358, 413 |
| PfeI | GAWTC | 4 cut(s) | 128, 1084, 1225, 1503 |
| PkrI | GCNGC | 3 cut(s) | 70, 893, 1641 |
| PleI | GAGTC | 4 cut(s) | 108, 145, 1532, 1691 |
| PpsI | GAGTC | 4 cut(s) | 108, 145, 1532, 1691 |
| PscI | ACATGT | 1 cut(s) | 455 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1541 |
| PsiI | TTATAA | 1 cut(s) | 1568 |
| Psp6I | CCWGG | 1 cut(s) | 1859 |
| PspFI | CCCAGC | 1 cut(s) | 1095 |
| PspGI | CCWGG | 1 cut(s) | 1859 |
| PspN4I | GGNNCC | 2 cut(s) | 34, 200 |
| PsuI | RGATCY | 3 cut(s) | 282, 319, 1204 |
| PvuII | CAGCTG | 1 cut(s) | 1498 |
| RsaI | GTAC | 3 cut(s) | 800, 1490, 1830 |
| RsaNI | GTAC | 3 cut(s) | 799, 1489, 1829 |
| RseI | CAYNNNNRTG | 1 cut(s) | 590 |
| SaqAI | TTAA | 7 cut(s) | 146, 520, 641, 853, 1121, 1136, 1169 |
| SatI | GCNGC | 3 cut(s) | 69, 892, 1640 |
| Sau3AI | GATC | 8 cut(s) | 179, 282, 319, 697, 1204, 1242, 1816, 1864 |
| SchI | GAGTC | 4 cut(s) | 109, 145, 1533, 1692 |
| ScrFI | CCNGG | 1 cut(s) | 1861 |
| SduI | GDGCHC | 1 cut(s) | 887 |
| SfcI | CTRYAG | 1 cut(s) | 830 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 590 |
| SmlI | CTYRAG | 1 cut(s) | 1546 |
| SmoI | CTYRAG | 1 cut(s) | 1546 |
| SsiI | CCGC | 4 cut(s) | 2, 69, 268, 1282 |
| SspMI | CTAG | 4 cut(s) | 880, 895, 1088, 1507 |
| StyD4I | CCNGG | 1 cut(s) | 1859 |
| StyI | CCWWGG | 1 cut(s) | 1734 |
| TaaI | ACNGT | 3 cut(s) | 793, 906, 1030 |
| TaqI | TCGA | 1 cut(s) | 575 |
| TatI | WGTACW | 2 cut(s) | 798, 1488 |
| TauI | GCSGC | 1 cut(s) | 71 |
| TfiI | GAWTC | 4 cut(s) | 128, 1084, 1225, 1503 |
| Tru1I | TTAA | 7 cut(s) | 146, 520, 641, 853, 1121, 1136, 1169 |
| Tru9I | TTAA | 7 cut(s) | 146, 520, 641, 853, 1121, 1136, 1169 |
| TscAI | CASTG | 4 cut(s) | 798, 1257, 1539, 1559 |
| TseFI | GTSAC | 3 cut(s) | 339, 897, 1043 |
| TseI | GCWGC | 2 cut(s) | 891, 1639 |
| Tsp45I | GTSAC | 3 cut(s) | 339, 897, 1043 |
| TspDTI | ATGAA | 7 cut(s) | 172, 367, 854, 856, 884, 1199, 1322 |
| TspGWI | ACGGA | 2 cut(s) | 971, 1031 |
| TspRI | CASTG | 4 cut(s) | 798, 1257, 1539, 1559 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1272, 1616 |
| XapI | RAATTY | 3 cut(s) | 429, 1186, 1715 |
| XbaI | TCTAGA | 2 cut(s) | 879, 1506 |
| XceI | RCATGY | 1 cut(s) | 459 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 402, 1198 |
| XmiI | GTMKAC | 1 cut(s) | 1005 |
| XmnI | GAANNNNTTC | 2 cut(s) | 358, 413 |
| XspI | CTAG | 4 cut(s) | 880, 895, 1088, 1507 |
| Zsp2I | ATGCAT | 2 cut(s) | 582, 763 |