Rmu_sc0038035.1_g000001

Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038035.1
Physical Location & Seq
Reverse (-)
2 .. 3725
3724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038035.1_g000001.1.cds

Sequence Viewer

Length: 1899 bp
ccgccgatgtggactgcgacgagttctgggggaaccccgagttcgttgaagtcgtcggtatcggaagccgcaacgacgccgtttttgacttctgtatggagtcgccgttccggttttcgtctctacgattctggcatattctcattaaggactcaatgaaggcacaattacaacgccggatcgtcggaaaagatgtggctccgatggtgtttgaagcgccgatgtcttcaaagtcgtgttcaaaggctgttatacttgtggcaagtgcgggatatggcttggatctcatgacagcaattgagatactcaaaacgataagatctgcaaatggatttgtggtcactattattatgaagccattcagctttgaaggacagagacgccaagatgaggccaaaaatctcatggaaacacttcaggagcatacaaatttacttattgctcttgatactgacatgttactcaaaaaggacttggtaactttagatgaggctgtcaggactgcaaataatgcagttttaatggcaataactgccgtatctgttctaacatctgatatacacagaaagtttatcgatgcatcccattatgatgtgaaaaaagttgaagtatcagaagtaatgcaagttttggaaagatttaaagaagcaaaaattggatttggtgctggctacaacatcaaaacttcaattttacgatccatgtatgactgccctttcctgagtgtgggtgtaaaggacttggatggaatggttatatgcattgttgcaagttctggtgctattgataacagtgatgtacaggaaactttgcatacttttcgtcaaactacagaatatgaaggggaaatcttaatttctacaattcatgaacccagtctagagcccaagctgctagtcacaacggtttttatcttaggttttgctgaaaagcaggtttctcagaaaagtagcatattgtctggactggctcagcactttccgttctttttcaatctatttagtagacatcaaccacaatcaaatgacagtcaggaatatccgtcacttcaaaatcccctttctgaagagatagatgcaccagattctagtgagctgggaaatataaatgctgttgatgttaaagctgaaaagtttaataattattctgaagaacctcagacgggaattaacagcaactacaatgaattccacatttcaagtggatctgagcaaaccagtattgaatcgtcgggtttatatgatccaatcactgaagaaacttctgccttccaaaggcaaccgcttgttagttggaacatggggcatgaatatcagattgcaaaggattgggggaaagagaagggtggtgaagatggagctatgctgatgcttgatgacctgagtgtcttttgccttccagttggtgtgaggtctccagaagagttgaaagagaatgtctcatttccaacacaaaacccagagacaaaaaataaggatgatgtcaaagtacaaccagctgtgaatctagacttgtcttcttggagtccattcactgacacaggtcttgaggcagtgaaagatttttataattcggcatcagcacttgtaaaaggaaaagatgctgaaaatcctaagcaaggaaatctctctgttcgtgcagcatccatgctggaagcagaacgacattcaccaaaaaagtggagtcctatggtggagatgcaatacagaggaggaatttacagaggacgatgccaaggaggtcttcctgaaggaaagggtcgtctggttcttggagatggaagcatctatgatggtatgtggcgctatggaaaaagatcaggtctgggtacattctactttagtaatggggatgctttccagggatcatggagggatgatgtcatacatggcaaggtaa

Protein Analysis

632

Amino Acids

70.28

Weight (kDa)

5.01

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1568
AasI GACNNNNNNGTC 1 cut(s) 1384
Acc36I ACCTGC 1 cut(s) 924
AccI GTMKAC 1 cut(s) 1005
AciI CCGC 4 cut(s) 2, 69, 268, 1282
AclWI GGATC 6 cut(s) 187, 290, 692, 1212, 1237, 1872
AcsI RAATTY 3 cut(s) 429, 1186, 1715
AcuI CTGAAG 5 cut(s) 400, 1085, 1169, 1274, 1769
AcyI GRCGYC 2 cut(s) 77, 381
AfaI GTAC 3 cut(s) 800, 1490, 1830
AfiI CCNNNNNNNGG 5 cut(s) 390, 726, 1162, 1274, 1618
AflIII ACRYGT 1 cut(s) 455
AjnI CCWGG 1 cut(s) 1859
AjuI GAANNNNNNNTTGG 4 cut(s) 638, 670, 1727, 1759
AloI GAACNNNNNNTCC 2 cut(s) 91, 123
AluBI AGCT 6 cut(s) 365, 891, 1095, 1126, 1360, 1498
AluI AGCT 6 cut(s) 365, 891, 1095, 1126, 1360, 1498
Alw26I GTCTC 5 cut(s) 125, 372, 1418, 1443, 1456
AlwI GGATC 6 cut(s) 187, 290, 692, 1212, 1237, 1872
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 1 cut(s) 392
ApeKI GCWGC 2 cut(s) 891, 1639
ApoI RAATTY 3 cut(s) 429, 1186, 1715
ArsI GACNNNNNNTTYG 2 cut(s) 67, 99
Asp700I GAANNNNTTC 2 cut(s) 358, 413
AspLEI GCGC 2 cut(s) 219, 1805
AsuHPI GGTGA 2 cut(s) 1360, 1661
AvaI CYCGRG 1 cut(s) 37
BaeI ACNNNNGTAYC 2 cut(s) 521, 554
BanII GRGCYC 1 cut(s) 887
BbsI GAAGAC 3 cut(s) 218, 1508, 1735
BbvI GCAGC 2 cut(s) 878, 1651
BccI CCATC 5 cut(s) 198, 739, 1348, 1771, 1786
BceAI ACGGC 3 cut(s) 64, 90, 520
BcgI CGANNNNNNTGC 2 cut(s) 802, 836
BciT130I CCWGG 1 cut(s) 1861
BcoDI GTCTC 5 cut(s) 125, 372, 1418, 1443, 1456
BfaI CTAG 4 cut(s) 880, 895, 1088, 1507
BfmI CTRYAG 1 cut(s) 830
BfoI RGCGCY 2 cut(s) 220, 1806
BfuAI ACCTGC 1 cut(s) 924
BglII AGATCT 1 cut(s) 319
BisI GCNGC 3 cut(s) 69, 892, 1640
BlpI GCTNAGC 1 cut(s) 971
BlsI GCNGC 3 cut(s) 70, 893, 1641
Bme1390I CCNGG 1 cut(s) 1861
BmeT110I CYCGRG 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 34, 200
BmrFI CCNGG 1 cut(s) 1861
BmrI ACTGGG 1 cut(s) 869
BmuI ACTGGG 1 cut(s) 869
BoxI GACNNNNGTC 1 cut(s) 1541
BpiI GAAGAC 3 cut(s) 218, 1508, 1735
BplI GAGNNNNNCTC 2 cut(s) 1423, 1455
BpmI CTGGAG 1 cut(s) 1400
Bpu10I CCTNAGC 1 cut(s) 1613
Bpu1102I GCTNAGC 1 cut(s) 971
BpuEI CTTGAG 1 cut(s) 1567
Bsa29I ATCGAT 1 cut(s) 575
BsaHI GRCGYC 2 cut(s) 77, 381
BsaI GGTCTC 1 cut(s) 1418
BsaJI CCNNGG 2 cut(s) 1734, 1860
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 5 cut(s) 390, 726, 1162, 1274, 1618
Bse1I ACTGG 4 cut(s) 875, 971, 1217, 1399
BseBI CCWGG 1 cut(s) 1861
BseCI ATCGAT 1 cut(s) 575
BseDI CCNNGG 2 cut(s) 1734, 1860
BseGI GGATG 6 cut(s) 580, 750, 1482, 1642, 1857, 1881
BseLI CCNNNNNNNGG 5 cut(s) 390, 726, 1162, 1274, 1618
BseMII CTCAG 6 cut(s) 712, 955, 985, 1171, 1199, 1372
BseNI ACTGG 4 cut(s) 875, 971, 1217, 1399
BseRI GAGGAG 1 cut(s) 1724
BseXI GCAGC 2 cut(s) 878, 1651
BseYI CCCAGC 1 cut(s) 1095
BsgI GTGCAG 1 cut(s) 1658
BshFI GGCC 1 cut(s) 394
BshVI ATCGAT 1 cut(s) 575
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 111, 177
BslI CCNNNNNNNGG 5 cut(s) 390, 726, 1162, 1274, 1618
BsmAI GTCTC 5 cut(s) 125, 372, 1418, 1443, 1456
BsmBI CGTCTC 2 cut(s) 125, 372
BsnI GGCC 1 cut(s) 394
Bso31I GGTCTC 1 cut(s) 1418
BsoBI CYCGRG 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 887
Bsp1407I TGTACA 1 cut(s) 798
Bsp143I GATC 8 cut(s) 179, 282, 319, 697, 1204, 1242, 1816, 1864
Bsp1720I GCTNAGC 1 cut(s) 971
BspACI CCGC 4 cut(s) 2, 69, 268, 1282
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 6 cut(s) 713, 954, 984, 1170, 1200, 1373
BspDI ATCGAT 1 cut(s) 575
BspHI TCATGA 2 cut(s) 287, 867
BspLI GGNNCC 2 cut(s) 34, 200
BspMI ACCTGC 1 cut(s) 924
BspPI GGATC 6 cut(s) 187, 290, 692, 1212, 1237, 1872
BspTNI GGTCTC 1 cut(s) 1418
BsrGI TGTACA 1 cut(s) 798
BsrI ACTGG 4 cut(s) 875, 971, 1217, 1399
BssECI CCNNGG 2 cut(s) 1734, 1860
BssMI GATC 8 cut(s) 179, 282, 319, 697, 1204, 1242, 1816, 1864
BssNI GRCGYC 2 cut(s) 77, 381
BssT1I CCWWGG 1 cut(s) 1734
Bst2UI CCWGG 1 cut(s) 1861
Bst4CI ACNGT 3 cut(s) 793, 906, 1030
Bst6I CTCTTC 2 cut(s) 1061, 1415
BstACI GRCGYC 2 cut(s) 77, 381
BstAPI GCANNNNNTGC 2 cut(s) 511, 532
BstAUI TGTACA 1 cut(s) 798
BstC8I GCNNGC 1 cut(s) 669
BstDEI CTNAG 8 cut(s) 721, 915, 941, 971, 1157, 1208, 1381, 1613
BstENI CCTNNNNNAGG 2 cut(s) 1272, 1616
BstF5I GGATG 6 cut(s) 580, 750, 1482, 1642, 1857, 1881
BstH2I RGCGCY 2 cut(s) 220, 1806
BstHHI GCGC 2 cut(s) 219, 1805
BstKTI GATC 8 cut(s) 182, 285, 322, 700, 1207, 1245, 1819, 1867
BstMAI GTCTC 5 cut(s) 125, 372, 1418, 1443, 1456
BstMBI GATC 8 cut(s) 179, 282, 319, 697, 1204, 1242, 1816, 1864
BstMWI GCNNNNNNNGC 3 cut(s) 511, 532, 891
BstNI CCWGG 1 cut(s) 1861
BstNSI RCATGY 1 cut(s) 459
BstPAI GACNNNNGTC 1 cut(s) 1541
BstSCI CCNGG 1 cut(s) 1859
BstSFI CTRYAG 1 cut(s) 830
BstV1I GCAGC 2 cut(s) 878, 1651
BstV2I GAAGAC 3 cut(s) 218, 1508, 1735
BstX2I RGATCY 3 cut(s) 282, 319, 1204
BstXI CCANNNNNNTGG 1 cut(s) 1679
BstYI RGATCY 3 cut(s) 282, 319, 1204
Bsu15I ATCGAT 1 cut(s) 575
BsuRI GGCC 1 cut(s) 394
BsuTUI ATCGAT 1 cut(s) 575
BtsCI GGATG 6 cut(s) 580, 750, 1482, 1642, 1857, 1881
BtsI GCAGTG 1 cut(s) 1559
BtsIMutI CAGTG 4 cut(s) 798, 1250, 1532, 1559
BveI ACCTGC 1 cut(s) 924
Cac8I GCNNGC 1 cut(s) 669
CciI TCATGA 2 cut(s) 287, 867
CfoI GCGC 2 cut(s) 219, 1805
ClaI ATCGAT 1 cut(s) 575
CseI GACGC 2 cut(s) 85, 389
Csp6I GTAC 3 cut(s) 799, 1489, 1829
CviQI GTAC 3 cut(s) 799, 1489, 1829
DdeI CTNAG 8 cut(s) 721, 915, 941, 971, 1157, 1208, 1381, 1613
DpnI GATC 8 cut(s) 181, 284, 321, 699, 1206, 1244, 1818, 1866
DpnII GATC 8 cut(s) 179, 282, 319, 697, 1204, 1242, 1816, 1864
DraI TTTAAA 1 cut(s) 642
DrdI GACNNNNNNGTC 1 cut(s) 1384
DseDI GACNNNNNNGTC 1 cut(s) 1384
Eam1104I CTCTTC 2 cut(s) 1061, 1415
EarI CTCTTC 2 cut(s) 1061, 1415
Eco130I CCWWGG 1 cut(s) 1734
Eco24I GRGCYC 1 cut(s) 887
Eco31I GGTCTC 1 cut(s) 1418
Eco57I CTGAAG 5 cut(s) 400, 1085, 1169, 1274, 1769
Eco88I CYCGRG 1 cut(s) 37
EcoNI CCTNNNNNAGG 2 cut(s) 1272, 1616
EcoRI GAATTC 1 cut(s) 1186
EcoRII CCWGG 1 cut(s) 1859
EcoT14I CCWWGG 1 cut(s) 1734
EcoT22I ATGCAT 2 cut(s) 582, 763
EcoT38I GRGCYC 1 cut(s) 887
ErhI CCWWGG 1 cut(s) 1734
Esp3I CGTCTC 2 cut(s) 125, 372
FalI AAGNNNNNCTT 2 cut(s) 1727, 1759
FauI CCCGC 1 cut(s) 261
FblI GTMKAC 1 cut(s) 1005
Fnu4HI GCNGC 3 cut(s) 69, 892, 1640
FokI GGATG 6 cut(s) 567, 757, 1489, 1629, 1864, 1888
FriOI GRGCYC 1 cut(s) 887
Fsp4HI GCNGC 3 cut(s) 69, 892, 1640
FspBI CTAG 4 cut(s) 880, 895, 1088, 1507
GlaI GCGC 2 cut(s) 218, 1804
GluI GCNGC 3 cut(s) 69, 892, 1640
GsaI CCCAGC 1 cut(s) 1099
GsuI CTGGAG 1 cut(s) 1400
HaeII RGCGCY 2 cut(s) 220, 1806
HaeIII GGCC 1 cut(s) 394
HapII CCGG 2 cut(s) 111, 177
HgaI GACGC 2 cut(s) 85, 389
HhaI GCGC 2 cut(s) 219, 1805
Hin1I GRCGYC 2 cut(s) 77, 381
Hin6I GCGC 2 cut(s) 217, 1803
HinP1I GCGC 2 cut(s) 217, 1803
HinfI GANTC 8 cut(s) 100, 128, 151, 1084, 1225, 1503, 1524, 1683
HpaII CCGG 2 cut(s) 111, 177
HphI GGTGA 2 cut(s) 1360, 1661
Hpy166II GTNNAC 2 cut(s) 12, 1006
Hpy8I GTNNAC 2 cut(s) 12, 1006
Hpy99I CGWCG 5 cut(s) 22, 58, 79, 187, 1233
HpyAV CCTTC 7 cut(s) 153, 364, 835, 1278, 1335, 1405, 1744
HpyCH4III ACNGT 3 cut(s) 793, 906, 1030
HpyF10VI GCNNNNNNNGC 3 cut(s) 511, 532, 891
HpyF3I CTNAG 8 cut(s) 721, 915, 941, 971, 1157, 1208, 1381, 1613
Hsp92I GRCGYC 2 cut(s) 77, 381
HspAI GCGC 2 cut(s) 217, 1803
Kzo9I GATC 8 cut(s) 179, 282, 319, 697, 1204, 1242, 1816, 1864
LmnI GCTCC 3 cut(s) 204, 420, 1357
Lsp1109I GCAGC 2 cut(s) 878, 1651
MaeI CTAG 4 cut(s) 880, 895, 1088, 1507
MaeIII GTNAC 5 cut(s) 339, 458, 477, 897, 1043
MalI GATC 8 cut(s) 181, 284, 321, 699, 1206, 1244, 1818, 1866
MboI GATC 8 cut(s) 179, 282, 319, 697, 1204, 1242, 1816, 1864
MboII GAAGA 8 cut(s) 218, 1078, 1162, 1267, 1363, 1432, 1508, 1735
MfeI CAATTG 1 cut(s) 296
MflI RGATCY 3 cut(s) 282, 319, 1204
MhlI GDGCHC 1 cut(s) 887
MlyI GAGTC 4 cut(s) 109, 145, 1533, 1692
MmeI TCCRAC 3 cut(s) 165, 1273, 1471
Mph1103I ATGCAT 2 cut(s) 582, 763
MroXI GAANNNNTTC 2 cut(s) 358, 413
MseI TTAA 7 cut(s) 146, 520, 641, 853, 1121, 1136, 1169
MslI CAYNNNNRTG 1 cut(s) 590
MspA1I CMGCKG 1 cut(s) 1498
MspI CCGG 2 cut(s) 111, 177
MspR9I CCNGG 1 cut(s) 1861
MunI CAATTG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 1861
MwoI GCNNNNNNNGC 3 cut(s) 511, 532, 891
NdeII GATC 8 cut(s) 179, 282, 319, 697, 1204, 1242, 1816, 1864
NlaIV GGNNCC 2 cut(s) 34, 200
NmuCI GTSAC 3 cut(s) 339, 897, 1043
NsiI ATGCAT 2 cut(s) 582, 763
NspI RCATGY 1 cut(s) 459
PagI TCATGA 2 cut(s) 287, 867
PciI ACATGT 1 cut(s) 455
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PdmI GAANNNNTTC 2 cut(s) 358, 413
PfeI GAWTC 4 cut(s) 128, 1084, 1225, 1503
PkrI GCNGC 3 cut(s) 70, 893, 1641
PleI GAGTC 4 cut(s) 108, 145, 1532, 1691
PpsI GAGTC 4 cut(s) 108, 145, 1532, 1691
PscI ACATGT 1 cut(s) 455
PshAI GACNNNNGTC 1 cut(s) 1541
PsiI TTATAA 1 cut(s) 1568
Psp6I CCWGG 1 cut(s) 1859
PspFI CCCAGC 1 cut(s) 1095
PspGI CCWGG 1 cut(s) 1859
PspN4I GGNNCC 2 cut(s) 34, 200
PsuI RGATCY 3 cut(s) 282, 319, 1204
PvuII CAGCTG 1 cut(s) 1498
RsaI GTAC 3 cut(s) 800, 1490, 1830
RsaNI GTAC 3 cut(s) 799, 1489, 1829
RseI CAYNNNNRTG 1 cut(s) 590
SaqAI TTAA 7 cut(s) 146, 520, 641, 853, 1121, 1136, 1169
SatI GCNGC 3 cut(s) 69, 892, 1640
Sau3AI GATC 8 cut(s) 179, 282, 319, 697, 1204, 1242, 1816, 1864
SchI GAGTC 4 cut(s) 109, 145, 1533, 1692
ScrFI CCNGG 1 cut(s) 1861
SduI GDGCHC 1 cut(s) 887
SfcI CTRYAG 1 cut(s) 830
SmiMI CAYNNNNRTG 1 cut(s) 590
SmlI CTYRAG 1 cut(s) 1546
SmoI CTYRAG 1 cut(s) 1546
SsiI CCGC 4 cut(s) 2, 69, 268, 1282
SspMI CTAG 4 cut(s) 880, 895, 1088, 1507
StyD4I CCNGG 1 cut(s) 1859
StyI CCWWGG 1 cut(s) 1734
TaaI ACNGT 3 cut(s) 793, 906, 1030
TaqI TCGA 1 cut(s) 575
TatI WGTACW 2 cut(s) 798, 1488
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 4 cut(s) 128, 1084, 1225, 1503
Tru1I TTAA 7 cut(s) 146, 520, 641, 853, 1121, 1136, 1169
Tru9I TTAA 7 cut(s) 146, 520, 641, 853, 1121, 1136, 1169
TscAI CASTG 4 cut(s) 798, 1257, 1539, 1559
TseFI GTSAC 3 cut(s) 339, 897, 1043
TseI GCWGC 2 cut(s) 891, 1639
Tsp45I GTSAC 3 cut(s) 339, 897, 1043
TspDTI ATGAA 7 cut(s) 172, 367, 854, 856, 884, 1199, 1322
TspGWI ACGGA 2 cut(s) 971, 1031
TspRI CASTG 4 cut(s) 798, 1257, 1539, 1559
XagI CCTNNNNNAGG 2 cut(s) 1272, 1616
XapI RAATTY 3 cut(s) 429, 1186, 1715
XbaI TCTAGA 2 cut(s) 879, 1506
XceI RCATGY 1 cut(s) 459
XcmI CCANNNNNNNNNTGG 2 cut(s) 402, 1198
XmiI GTMKAC 1 cut(s) 1005
XmnI GAANNNNTTC 2 cut(s) 358, 413
XspI CTAG 4 cut(s) 880, 895, 1088, 1507
Zsp2I ATGCAT 2 cut(s) 582, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.