Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008428

Physical Location & Seq

Genomic Coordinates Forward (+)

53600907 .. 53601558

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0363700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAGGCAGAGAAGAGAAAGCAGGCAGGCAACGACGTCGTTTCGCGGAGGCACAAGCATAAGAAGGCGCGGGATGAAACGACGGTGAACGAGGACGAGGTTCAGGAGTTCTTCGCTATCATCAGGCGCATACACGTGGCAGTCAACTACTTTAAGAGCGCTAACGGCGGTGGCAGTAAATATGTGGACGGAGAGTTGAGGGCAATCGAGGAGGCGGACGGCGTCAAAGGGATGGCCAAGACTACGAAGGAGGAGAATGTGGGATTCGATTTGAACGCGGAACCGGACCCGGAATTTGATCTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019867 GO:0019898 GO:0031090 GO:0031312 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0035452 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

102

Amino Acids

11.47

Weight (kDa)

5.4

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75010
fragaria_vesca	FvH4_4g36030 FvH4_4g36030 FvH4_4g36030 FvH4_4g36030 FvH4_4g36030 FvH4_4g36030
malus_domestica	MD16G1009700.v1.1
prunus_persica	Prupe.1G340900_v2.0.a1 Prupe.1G340900_v2.0.a1
pyrus_communis	pycom16g00950
rosa_chinensis	RchiOBHm_Chr4g0445651
rosa_laevigata	RLG00000005721
rosa_multiflora	Rmu_sc0003637.1_g000022 Rmu_sc0019383.1_g000004 Rmu_sc0038035.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386130
rosa_rugosa	Rorug04G0363700 Rorug04G0363800
rosa_samantha	Rh4AG425300 Rh4CG451600 Rh4DG433600
rosa_wichuraiana	Rw4G036430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccII	CGCG	3 cut(s)	46, 70, 278
AciI	CCGC	5 cut(s)	46, 70, 168, 215, 278
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	293
AcvI	CACGTG	1 cut(s)	136
AcyI	GRCGYC	2 cut(s)	36, 222
AfeI	AGCGCT	1 cut(s)	160
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	274
Aor51HI	AGCGCT	1 cut(s)	160
AoxI	GGCC	1 cut(s)	234
ApoI	RAATTY	1 cut(s)	293
ArsI	GACNNNNNNTTYG	1 cut(s)	278
AspLEI	GCGC	3 cut(s)	70, 129, 161
AspS9I	GGNCC	1 cut(s)	286
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	286
BalI	TGGCCA	1 cut(s)	236
BbrPI	CACGTG	1 cut(s)	136
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	2 cut(s)	181, 235
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BcnI	CCSGG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	282, 288
BmrFI	CCNGG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	136
BsaHI	GRCGYC	2 cut(s)	36, 222
BsaWI	WCCGGW	1 cut(s)	283
BseGI	GGATG	2 cut(s)	79, 237
BseMII	CTCAG	1 cut(s)	293
BseRI	GAGGAG	2 cut(s)	224, 266
Bsh1236I	CGCG	3 cut(s)	46, 70, 278
BshFI	GGCC	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	284, 290
BsnI	GGCC	1 cut(s)	236
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	5 cut(s)	46, 70, 168, 215, 278
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	294
BspFNI	CGCG	3 cut(s)	46, 70, 278
BspLI	GGNNCC	2 cut(s)	282, 288
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	2 cut(s)	36, 222
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	2 cut(s)	36, 222
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	24, 28
BstDEI	CTNAG	1 cut(s)	302
BstF5I	GGATG	2 cut(s)	79, 237
BstFNI	CGCG	3 cut(s)	46, 70, 278
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	3 cut(s)	70, 129, 161
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	288
BstUI	CGCG	3 cut(s)	46, 70, 278
BsuRI	GGCC	1 cut(s)	236
BtsCI	GGATG	2 cut(s)	79, 237
Cac8I	GCNNGC	2 cut(s)	24, 28
CfoI	GCGC	3 cut(s)	70, 129, 161
Cfr13I	GGNCC	1 cut(s)	286
CseI	GACGC	1 cut(s)	211
CviJI	RGCY	1 cut(s)	236
CviKI_1	RGCY	1 cut(s)	236
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
EciI	GGCGGA	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	286
Eco47III	AGCGCT	1 cut(s)	160
Eco72I	CACGTG	1 cut(s)	136
FaiI	YATR	3 cut(s)	60, 131, 183
FauI	CCCGC	1 cut(s)	63
FokI	GGATG	2 cut(s)	86, 244
GlaI	GCGC	3 cut(s)	69, 128, 160
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	236
HapII	CCGG	2 cut(s)	284, 290
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	3 cut(s)	70, 129, 161
Hin1I	GRCGYC	2 cut(s)	36, 222
Hin6I	GCGC	3 cut(s)	68, 127, 159
HinP1I	GCGC	3 cut(s)	68, 127, 159
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	264
HpaII	CCGG	2 cut(s)	284, 290
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	3 cut(s)	88, 145, 187
Hpy188I	TCNGA	1 cut(s)	303
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	3 cut(s)	88, 145, 187
Hpy99I	CGWCG	3 cut(s)	38, 41, 85
HpyAV	CCTTC	2 cut(s)	58, 241
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	2 cut(s)	36, 135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	1 cut(s)	302
HpySE526I	ACGT	2 cut(s)	36, 135
Hsp92I	GRCGYC	2 cut(s)	36, 222
HspAI	GCGC	3 cut(s)	68, 127, 159
Kzo9I	GATC	1 cut(s)	298
LpnPI	CCDG	6 cut(s)	8, 12, 89, 109, 297, 303
MaeII	ACGT	2 cut(s)	36, 135
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	2 cut(s)	25, 103
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	1 cut(s)	293
MluNI	TGGCCA	1 cut(s)	236
MnlI	CCTC	7 cut(s)	42, 85, 91, 192, 202, 205, 244
Mox20I	TGGCCA	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	2 cut(s)	153, 307
MslI	CAYNNNNRTG	1 cut(s)	134
Msp20I	TGGCCA	1 cut(s)	236
MspI	CCGG	2 cut(s)	284, 290
MspR9I	CCNGG	1 cut(s)	290
MvnI	CGCG	3 cut(s)	46, 70, 278
MwoI	GCNNNNNNNGC	1 cut(s)	165
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	282, 288
PfeI	GAWTC	1 cut(s)	264
PflFI	GACNNNGTC	1 cut(s)	221
PmaCI	CACGTG	1 cut(s)	136
PmlI	CACGTG	1 cut(s)	136
Ppu21I	YACGTR	1 cut(s)	136
PspCI	CACGTG	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	282, 288
PspPI	GGNCC	1 cut(s)	286
PsyI	GACNNNGTC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	153, 307
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	3 cut(s)	39, 102, 138
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	293
SsiI	CCGC	5 cut(s)	46, 70, 168, 215, 278
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	2 cut(s)	39, 138
TaqI	TCGA	2 cut(s)	207, 267
TasI	AATT	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	2 cut(s)	153, 307
Tru9I	TTAA	2 cut(s)	153, 307
TspDTI	ATGAA	1 cut(s)	90
TspGWI	ACGGA	1 cut(s)	204
Tth111I	GACNNNGTC	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	1 cut(s)	293
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.