Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G75010 |
| fragaria_vesca | FvH4_4g36030 FvH4_4g36030 FvH4_4g36030 FvH4_4g36030 FvH4_4g36030 FvH4_4g36030 |
| malus_domestica | MD16G1009700.v1.1 |
| prunus_persica | Prupe.1G340900_v2.0.a1 Prupe.1G340900_v2.0.a1 |
| pyrus_communis | pycom16g00950 |
| rosa_chinensis | RchiOBHm_Chr4g0445651 |
| rosa_laevigata | RLG00000005721 |
| rosa_multiflora | Rmu_sc0003637.1_g000022 Rmu_sc0019383.1_g000004 Rmu_sc0038035.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00386130 |
| rosa_rugosa | Rorug04G0363700 Rorug04G0363800 |
| rosa_samantha | Rh4AG425300 Rh4CG451600 Rh4DG433600 |
| rosa_wichuraiana | Rw4G036430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1281 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1097 |
| Acc36I | ACCTGC | 2 cut(s) | 612, 637 |
| AccI | GTMKAC | 1 cut(s) | 718 |
| AciI | CCGC | 2 cut(s) | 995, 1671 |
| AclWI | GGATC | 5 cut(s) | 405, 925, 950, 1585, 1800 |
| AcoI | YGGCCR | 2 cut(s) | 1714, 1741 |
| AcsI | RAATTY | 3 cut(s) | 142, 899, 1428 |
| AcuI | CTGAAG | 5 cut(s) | 113, 798, 882, 987, 1482 |
| AcyI | GRCGYC | 1 cut(s) | 94 |
| AfaI | GTAC | 3 cut(s) | 513, 1203, 1543 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 103, 439, 875, 987, 1331, 1819 |
| AflIII | ACRYGT | 1 cut(s) | 168 |
| AgsI | TTSAA | 9 cut(s) | 83, 320, 402, 706, 764, 912, 938, 1141, 1692 |
| AjnI | CCWGG | 1 cut(s) | 1572 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 351, 383, 1440, 1472 |
| AluBI | AGCT | 5 cut(s) | 78, 808, 839, 1073, 1211 |
| AluI | AGCT | 5 cut(s) | 78, 808, 839, 1073, 1211 |
| Alw26I | GTCTC | 5 cut(s) | 85, 1131, 1156, 1169, 1626 |
| AlwI | GGATC | 5 cut(s) | 405, 925, 950, 1585, 1800 |
| AoxI | GGCC | 4 cut(s) | 105, 1665, 1714, 1741 |
| ApeKI | GCWGC | 1 cut(s) | 1352 |
| ApoI | RAATTY | 3 cut(s) | 142, 899, 1428 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1625, 1657 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 71, 126 |
| AspLEI | GCGC | 1 cut(s) | 1518 |
| AsuHPI | GGTGA | 4 cut(s) | 1073, 1374, 1685, 1712 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 234, 267 |
| BalI | TGGCCA | 2 cut(s) | 1716, 1743 |
| BanII | GRGCYC | 1 cut(s) | 600 |
| BbsI | GAAGAC | 3 cut(s) | 1221, 1448, 1699 |
| BbvI | GCAGC | 1 cut(s) | 1364 |
| BccI | CCATC | 6 cut(s) | 452, 1061, 1484, 1499, 1632, 1760 |
| BceAI | ACGGC | 2 cut(s) | 233, 1797 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 515, 549 |
| BciT130I | CCWGG | 1 cut(s) | 1574 |
| BcoDI | GTCTC | 5 cut(s) | 85, 1131, 1156, 1169, 1626 |
| BfaI | CTAG | 4 cut(s) | 593, 608, 801, 1220 |
| BfmI | CTRYAG | 1 cut(s) | 543 |
| BfoI | RGCGCY | 1 cut(s) | 1519 |
| BfuAI | ACCTGC | 2 cut(s) | 612, 637 |
| BglII | AGATCT | 1 cut(s) | 32 |
| BisI | GCNGC | 1 cut(s) | 1353 |
| BlpI | GCTNAGC | 1 cut(s) | 684 |
| BlsI | GCNGC | 1 cut(s) | 1354 |
| Bme1390I | CCNGG | 1 cut(s) | 1574 |
| BmrFI | CCNGG | 1 cut(s) | 1574 |
| BmrI | ACTGGG | 1 cut(s) | 582 |
| BmuI | ACTGGG | 1 cut(s) | 582 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1254 |
| BpiI | GAAGAC | 3 cut(s) | 1221, 1448, 1699 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1136, 1168 |
| BpmI | CTGGAG | 1 cut(s) | 1113 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1326 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 684 |
| BpuEI | CTTGAG | 1 cut(s) | 1280 |
| Bsa29I | ATCGAT | 2 cut(s) | 288, 1758 |
| BsaHI | GRCGYC | 1 cut(s) | 94 |
| BsaI | GGTCTC | 2 cut(s) | 1131, 1626 |
| BsaJI | CCNNGG | 2 cut(s) | 1447, 1573 |
| BsaWI | WCCGGW | 1 cut(s) | 1628 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 103, 439, 875, 987, 1331, 1819 |
| Bse1I | ACTGG | 6 cut(s) | 588, 684, 930, 1112, 1744, 1824 |
| BseBI | CCWGG | 1 cut(s) | 1574 |
| BseCI | ATCGAT | 2 cut(s) | 288, 1758 |
| BseDI | CCNNGG | 2 cut(s) | 1447, 1573 |
| BseGI | GGATG | 6 cut(s) | 293, 463, 1195, 1355, 1570, 1594 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 103, 439, 875, 987, 1331, 1819 |
| BseMII | CTCAG | 6 cut(s) | 425, 645, 698, 884, 912, 1085 |
| BseNI | ACTGG | 6 cut(s) | 588, 684, 930, 1112, 1744, 1824 |
| BseRI | GAGGAG | 1 cut(s) | 1437 |
| BseXI | GCAGC | 1 cut(s) | 1364 |
| BseYI | CCCAGC | 1 cut(s) | 808 |
| BsgI | GTGCAG | 1 cut(s) | 1371 |
| BshFI | GGCC | 4 cut(s) | 107, 1667, 1716, 1743 |
| BshVI | ATCGAT | 2 cut(s) | 288, 1758 |
| BsiSI | CCGG | 1 cut(s) | 1629 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 103, 439, 875, 987, 1331, 1819 |
| BsmAI | GTCTC | 5 cut(s) | 85, 1131, 1156, 1169, 1626 |
| BsmBI | CGTCTC | 1 cut(s) | 85 |
| BsnI | GGCC | 4 cut(s) | 107, 1667, 1716, 1743 |
| Bso31I | GGTCTC | 2 cut(s) | 1131, 1626 |
| Bsp1286I | GDGCHC | 1 cut(s) | 600 |
| Bsp1407I | TGTACA | 1 cut(s) | 511 |
| Bsp143I | GATC | 7 cut(s) | 32, 410, 917, 955, 1529, 1577, 1792 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 684 |
| BspACI | CCGC | 2 cut(s) | 995, 1671 |
| BspANI | GGCC | 4 cut(s) | 107, 1667, 1716, 1743 |
| BspCNI | CTCAG | 6 cut(s) | 426, 646, 697, 883, 913, 1086 |
| BspDI | ATCGAT | 2 cut(s) | 288, 1758 |
| BspHI | TCATGA | 1 cut(s) | 580 |
| BspMI | ACCTGC | 2 cut(s) | 612, 637 |
| BspPI | GGATC | 5 cut(s) | 405, 925, 950, 1585, 1800 |
| BspTNI | GGTCTC | 2 cut(s) | 1131, 1626 |
| BsrGI | TGTACA | 1 cut(s) | 511 |
| BsrI | ACTGG | 6 cut(s) | 588, 684, 930, 1112, 1744, 1824 |
| BssECI | CCNNGG | 2 cut(s) | 1447, 1573 |
| BssMI | GATC | 7 cut(s) | 32, 410, 917, 955, 1529, 1577, 1792 |
| BssNI | GRCGYC | 1 cut(s) | 94 |
| BssT1I | CCWWGG | 1 cut(s) | 1447 |
| Bst2UI | CCWGG | 1 cut(s) | 1574 |
| Bst4CI | ACNGT | 3 cut(s) | 506, 619, 743 |
| Bst6I | CTCTTC | 2 cut(s) | 774, 1128 |
| BstACI | GRCGYC | 1 cut(s) | 94 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 224, 245 |
| BstAUI | TGTACA | 1 cut(s) | 511 |
| BstC8I | GCNNGC | 3 cut(s) | 382, 927, 1669 |
| BstDEI | CTNAG | 8 cut(s) | 434, 628, 654, 684, 870, 921, 1094, 1326 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 985, 1329 |
| BstF5I | GGATG | 6 cut(s) | 293, 463, 1195, 1355, 1570, 1594 |
| BstH2I | RGCGCY | 1 cut(s) | 1519 |
| BstHHI | GCGC | 1 cut(s) | 1518 |
| BstKTI | GATC | 7 cut(s) | 35, 413, 920, 958, 1532, 1580, 1795 |
| BstMAI | GTCTC | 5 cut(s) | 85, 1131, 1156, 1169, 1626 |
| BstMBI | GATC | 7 cut(s) | 32, 410, 917, 955, 1529, 1577, 1792 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 224, 245, 604 |
| BstNI | CCWGG | 1 cut(s) | 1574 |
| BstNSI | RCATGY | 1 cut(s) | 172 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1254 |
| BstSCI | CCNGG | 1 cut(s) | 1572 |
| BstSFI | CTRYAG | 1 cut(s) | 543 |
| BstV1I | GCAGC | 1 cut(s) | 1364 |
| BstV2I | GAAGAC | 3 cut(s) | 1221, 1448, 1699 |
| BstX2I | RGATCY | 2 cut(s) | 32, 917 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1392 |
| BstYI | RGATCY | 2 cut(s) | 32, 917 |
| Bsu15I | ATCGAT | 2 cut(s) | 288, 1758 |
| BsuRI | GGCC | 4 cut(s) | 107, 1667, 1716, 1743 |
| BsuTUI | ATCGAT | 2 cut(s) | 288, 1758 |
| BtsCI | GGATG | 6 cut(s) | 293, 463, 1195, 1355, 1570, 1594 |
| BtsI | GCAGTG | 1 cut(s) | 1272 |
| BtsIMutI | CAGTG | 4 cut(s) | 511, 963, 1245, 1272 |
| BveI | ACCTGC | 2 cut(s) | 612, 637 |
| Cac8I | GCNNGC | 3 cut(s) | 382, 927, 1669 |
| CciI | TCATGA | 1 cut(s) | 580 |
| CfoI | GCGC | 1 cut(s) | 1518 |
| ClaI | ATCGAT | 2 cut(s) | 288, 1758 |
| CseI | GACGC | 1 cut(s) | 102 |
| Csp6I | GTAC | 3 cut(s) | 512, 1202, 1542 |
| CviQI | GTAC | 3 cut(s) | 512, 1202, 1542 |
| DdeI | CTNAG | 8 cut(s) | 434, 628, 654, 684, 870, 921, 1094, 1326 |
| DpnI | GATC | 7 cut(s) | 34, 412, 919, 957, 1531, 1579, 1794 |
| DpnII | GATC | 7 cut(s) | 32, 410, 917, 955, 1529, 1577, 1792 |
| DraI | TTTAAA | 1 cut(s) | 355 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1097 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1097 |
| EaeI | YGGCCR | 2 cut(s) | 1714, 1741 |
| Eam1104I | CTCTTC | 2 cut(s) | 774, 1128 |
| EarI | CTCTTC | 2 cut(s) | 774, 1128 |
| Eco130I | CCWWGG | 1 cut(s) | 1447 |
| Eco24I | GRGCYC | 1 cut(s) | 600 |
| Eco31I | GGTCTC | 2 cut(s) | 1131, 1626 |
| Eco57I | CTGAAG | 5 cut(s) | 113, 798, 882, 987, 1482 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 985, 1329 |
| EcoRI | GAATTC | 1 cut(s) | 899 |
| EcoRII | CCWGG | 1 cut(s) | 1572 |
| EcoT14I | CCWWGG | 1 cut(s) | 1447 |
| EcoT22I | ATGCAT | 2 cut(s) | 295, 476 |
| EcoT38I | GRGCYC | 1 cut(s) | 600 |
| ErhI | CCWWGG | 1 cut(s) | 1447 |
| Esp3I | CGTCTC | 1 cut(s) | 85 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1440, 1472, 1788, 1820 |
| FblI | GTMKAC | 1 cut(s) | 718 |
| Fnu4HI | GCNGC | 1 cut(s) | 1353 |
| FokI | GGATG | 6 cut(s) | 280, 470, 1202, 1342, 1577, 1601 |
| FriOI | GRGCYC | 1 cut(s) | 600 |
| Fsp4HI | GCNGC | 1 cut(s) | 1353 |
| FspBI | CTAG | 4 cut(s) | 593, 608, 801, 1220 |
| GlaI | GCGC | 1 cut(s) | 1517 |
| GluI | GCNGC | 1 cut(s) | 1353 |
| GsaI | CCCAGC | 1 cut(s) | 812 |
| GsuI | CTGGAG | 1 cut(s) | 1113 |
| HaeII | RGCGCY | 1 cut(s) | 1519 |
| HaeIII | GGCC | 4 cut(s) | 107, 1667, 1716, 1743 |
| HapII | CCGG | 1 cut(s) | 1629 |
| HgaI | GACGC | 1 cut(s) | 102 |
| HhaI | GCGC | 1 cut(s) | 1518 |
| Hin1I | GRCGYC | 1 cut(s) | 94 |
| Hin6I | GCGC | 1 cut(s) | 1516 |
| HinP1I | GCGC | 1 cut(s) | 1516 |
| HinfI | GANTC | 7 cut(s) | 797, 938, 1216, 1237, 1396, 1678, 1823 |
| HpaII | CCGG | 1 cut(s) | 1629 |
| HphI | GGTGA | 4 cut(s) | 1073, 1374, 1685, 1712 |
| Hpy166II | GTNNAC | 2 cut(s) | 719, 1817 |
| Hpy188I | TCNGA | 9 cut(s) | 268, 328, 655, 778, 862, 873, 922, 1029, 1828 |
| Hpy8I | GTNNAC | 2 cut(s) | 719, 1817 |
| Hpy99I | CGWCG | 1 cut(s) | 946 |
| HpyAV | CCTTC | 6 cut(s) | 77, 548, 991, 1048, 1118, 1457 |
| HpyCH4III | ACNGT | 3 cut(s) | 506, 619, 743 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 224, 245, 604 |
| HpyF3I | CTNAG | 8 cut(s) | 434, 628, 654, 684, 870, 921, 1094, 1326 |
| Hsp92I | GRCGYC | 1 cut(s) | 94 |
| HspAI | GCGC | 1 cut(s) | 1516 |
| Kzo9I | GATC | 7 cut(s) | 32, 410, 917, 955, 1529, 1577, 1792 |
| LmnI | GCTCC | 3 cut(s) | 133, 1070, 1769 |
| Lsp1109I | GCAGC | 1 cut(s) | 1364 |
| MaeI | CTAG | 4 cut(s) | 593, 608, 801, 1220 |
| MaeIII | GTNAC | 5 cut(s) | 52, 171, 190, 610, 756 |
| MalI | GATC | 7 cut(s) | 34, 412, 919, 957, 1531, 1579, 1794 |
| MboI | GATC | 7 cut(s) | 32, 410, 917, 955, 1529, 1577, 1792 |
| MboII | GAAGA | 8 cut(s) | 791, 875, 980, 1076, 1145, 1221, 1448, 1699 |
| MfeI | CAATTG | 1 cut(s) | 9 |
| MflI | RGATCY | 2 cut(s) | 32, 917 |
| MhlI | GDGCHC | 1 cut(s) | 600 |
| MlsI | TGGCCA | 2 cut(s) | 1716, 1743 |
| MluNI | TGGCCA | 2 cut(s) | 1716, 1743 |
| MlyI | GAGTC | 4 cut(s) | 1246, 1405, 1687, 1817 |
| MmeI | TCCRAC | 2 cut(s) | 986, 1184 |
| Mox20I | TGGCCA | 2 cut(s) | 1716, 1743 |
| Mph1103I | ATGCAT | 2 cut(s) | 295, 476 |
| MroXI | GAANNNNTTC | 2 cut(s) | 71, 126 |
| MscI | TGGCCA | 2 cut(s) | 1716, 1743 |
| MseI | TTAA | 6 cut(s) | 233, 354, 566, 834, 849, 882 |
| MslI | CAYNNNNRTG | 1 cut(s) | 303 |
| Msp20I | TGGCCA | 2 cut(s) | 1716, 1743 |
| MspA1I | CMGCKG | 2 cut(s) | 1211, 1671 |
| MspI | CCGG | 1 cut(s) | 1629 |
| MspR9I | CCNGG | 1 cut(s) | 1574 |
| MunI | CAATTG | 1 cut(s) | 9 |
| MvaI | CCWGG | 1 cut(s) | 1574 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 224, 245, 604 |
| NdeII | GATC | 7 cut(s) | 32, 410, 917, 955, 1529, 1577, 1792 |
| NmuCI | GTSAC | 3 cut(s) | 52, 610, 756 |
| NsiI | ATGCAT | 2 cut(s) | 295, 476 |
| NspI | RCATGY | 1 cut(s) | 172 |
| PagI | TCATGA | 1 cut(s) | 580 |
| PciI | ACATGT | 1 cut(s) | 168 |
| PdmI | GAANNNNTTC | 2 cut(s) | 71, 126 |
| PfeI | GAWTC | 3 cut(s) | 797, 938, 1216 |
| PkrI | GCNGC | 1 cut(s) | 1354 |
| PleI | GAGTC | 4 cut(s) | 1245, 1404, 1686, 1817 |
| PpsI | GAGTC | 4 cut(s) | 1245, 1404, 1686, 1817 |
| PscI | ACATGT | 1 cut(s) | 168 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1254 |
| PsiI | TTATAA | 1 cut(s) | 1281 |
| Psp6I | CCWGG | 1 cut(s) | 1572 |
| PspFI | CCCAGC | 1 cut(s) | 808 |
| PspGI | CCWGG | 1 cut(s) | 1572 |
| PsuI | RGATCY | 2 cut(s) | 32, 917 |
| PvuII | CAGCTG | 1 cut(s) | 1211 |
| RsaI | GTAC | 3 cut(s) | 513, 1203, 1543 |
| RsaNI | GTAC | 3 cut(s) | 512, 1202, 1542 |
| RseI | CAYNNNNRTG | 1 cut(s) | 303 |
| SaqAI | TTAA | 6 cut(s) | 233, 354, 566, 834, 849, 882 |
| SatI | GCNGC | 1 cut(s) | 1353 |
| Sau3AI | GATC | 7 cut(s) | 32, 410, 917, 955, 1529, 1577, 1792 |
| SchI | GAGTC | 4 cut(s) | 1246, 1405, 1687, 1817 |
| ScrFI | CCNGG | 1 cut(s) | 1574 |
| SduI | GDGCHC | 1 cut(s) | 600 |
| SfcI | CTRYAG | 1 cut(s) | 543 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 303 |
| SmlI | CTYRAG | 1 cut(s) | 1259 |
| SmoI | CTYRAG | 1 cut(s) | 1259 |
| SsiI | CCGC | 2 cut(s) | 995, 1671 |
| SspMI | CTAG | 4 cut(s) | 593, 608, 801, 1220 |
| StyD4I | CCNGG | 1 cut(s) | 1572 |
| StyI | CCWWGG | 1 cut(s) | 1447 |
| TaaI | ACNGT | 3 cut(s) | 506, 619, 743 |
| TaqI | TCGA | 2 cut(s) | 288, 1758 |
| TaqII | GACCGA | 1 cut(s) | 1650 |
| TatI | WGTACW | 2 cut(s) | 511, 1201 |
| TfiI | GAWTC | 3 cut(s) | 797, 938, 1216 |
| Tru1I | TTAA | 6 cut(s) | 233, 354, 566, 834, 849, 882 |
| Tru9I | TTAA | 6 cut(s) | 233, 354, 566, 834, 849, 882 |
| TscAI | CASTG | 4 cut(s) | 511, 970, 1252, 1272 |
| TseFI | GTSAC | 3 cut(s) | 52, 610, 756 |
| TseI | GCWGC | 1 cut(s) | 1352 |
| Tsp45I | GTSAC | 3 cut(s) | 52, 610, 756 |
| TspDTI | ATGAA | 7 cut(s) | 80, 567, 569, 597, 912, 1035, 1738 |
| TspGWI | ACGGA | 2 cut(s) | 684, 744 |
| TspRI | CASTG | 4 cut(s) | 511, 970, 1252, 1272 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 985, 1329 |
| XapI | RAATTY | 3 cut(s) | 142, 899, 1428 |
| XbaI | TCTAGA | 2 cut(s) | 592, 1219 |
| XceI | RCATGY | 1 cut(s) | 172 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 115, 911, 1724 |
| XmiI | GTMKAC | 1 cut(s) | 718 |
| XmnI | GAANNNNTTC | 2 cut(s) | 71, 126 |
| XspI | CTAG | 4 cut(s) | 593, 608, 801, 1220 |
| Zsp2I | ATGCAT | 2 cut(s) | 295, 476 |