Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008428

Physical Location & Seq

Genomic Coordinates Forward (+)

53602014 .. 53602836

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0363800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGATGCAGAAAAGCGAAAGCGCGAGGATGAGGGCGAAATTGACGGGAAGAGAGCGAAATCGGAGGAAGATAACGGCGCGGTGGTGACGGAGGAGGAGGTGGAGGAGTTCTTTACCATAATCAGGAGGATACACGTGGCGGCCAGGCAGTTTGGGAAACCGGAAGGAGCAGCCGGCCCTAAGTTGACGACGTCAGAGAAATTGAGGCTCTCTTTCGAAGCAAGAGACTTTGAGGAAGAGAAAAGGCCGGAGGCGGATTCGGGTTTGGATCTCAATTCGGATCCTCCATCGGAAGAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019867 GO:0019898 GO:0031090 GO:0031312 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0035452 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

100

Amino Acids

11.27

Weight (kDa)

4.61

Isoelectric Point (pI)

71.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75010
fragaria_vesca	FvH4_4g36030 FvH4_4g36030 FvH4_4g36030 FvH4_4g36030 FvH4_4g36030 FvH4_4g36030
malus_domestica	MD16G1009700.v1.1
prunus_persica	Prupe.1G340900_v2.0.a1 Prupe.1G340900_v2.0.a1
pyrus_communis	pycom16g00950
rosa_chinensis	RchiOBHm_Chr4g0445651
rosa_laevigata	RLG00000005721
rosa_multiflora	Rmu_sc0003637.1_g000022 Rmu_sc0019383.1_g000004 Rmu_sc0038035.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386130
rosa_rugosa	Rorug04G0363700 Rorug04G0363800
rosa_samantha	Rh4AG425300 Rh4CG451600 Rh4DG433600
rosa_wichuraiana	Rw4G036430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	194
AccII	CGCG	2 cut(s)	24, 80
AciI	CCGC	3 cut(s)	80, 140, 254
AclWI	GGATC	3 cut(s)	275, 276, 288
AcoI	YGGCCR	1 cut(s)	141
AcvI	CACGTG	1 cut(s)	136
AcyI	GRCGYC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflIII	ACRYGT	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	1 cut(s)	300
AluI	AGCT	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	3 cut(s)	275, 276, 288
AoxI	GGCC	3 cut(s)	141, 175, 245
ApeKI	GCWGC	1 cut(s)	170
AspLEI	GCGC	2 cut(s)	24, 80
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	97
AsuII	TTCGAA	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	280
BbrPI	CACGTG	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	1 cut(s)	295
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	145
BciVI	GTATCC	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	123
BisI	GCNGC	2 cut(s)	141, 171
BlsI	GCNGC	2 cut(s)	142, 172
Bme1390I	CCNGG	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	145
Bpu14I	TTCGAA	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	136
BsaHI	GRCGYC	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	145
BseGI	GGATG	2 cut(s)	10, 34
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseRI	GAGGAG	3 cut(s)	107, 110, 119
BseXI	GCAGC	1 cut(s)	182
Bsh1236I	CGCG	2 cut(s)	24, 80
BshFI	GGCC	3 cut(s)	143, 177, 247
BsiSI	CCGG	3 cut(s)	161, 174, 248
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	219
BsnI	GGCC	3 cut(s)	143, 177, 247
Bsp119I	TTCGAA	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	268, 280
BspACI	CCGC	3 cut(s)	80, 140, 254
BspANI	GGCC	3 cut(s)	143, 177, 247
BspFNI	CGCG	2 cut(s)	24, 80
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	3 cut(s)	275, 276, 288
BspT104I	TTCGAA	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssMI	GATC	2 cut(s)	268, 280
BssNI	GRCGYC	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	145
Bst6I	CTCTTC	2 cut(s)	44, 231
BstACI	GRCGYC	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	136
BstBI	TTCGAA	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	10, 34
BstFNI	CGCG	2 cut(s)	24, 80
BstHHI	GCGC	2 cut(s)	24, 80
BstKTI	GATC	2 cut(s)	271, 283
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	2 cut(s)	268, 280
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstUI	CGCG	2 cut(s)	24, 80
BstV1I	GCAGC	1 cut(s)	182
BstX2I	RGATCY	2 cut(s)	268, 280
BstYI	RGATCY	2 cut(s)	268, 280
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	143, 177, 247
BtsCI	GGATG	2 cut(s)	10, 34
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	2 cut(s)	24, 80
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	176
CviJI	RGCY	6 cut(s)	143, 173, 177, 208, 247, 300
CviKI_1	RGCY	6 cut(s)	143, 173, 177, 208, 247, 300
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	2 cut(s)	270, 282
DpnII	GATC	2 cut(s)	268, 280
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	44, 231
EarI	CTCTTC	2 cut(s)	44, 231
EciI	GGCGGA	1 cut(s)	269
Eco72I	CACGTG	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	143
FaiI	YATR	1 cut(s)	119
Fnu4HI	GCNGC	2 cut(s)	141, 171
FokI	GGATG	2 cut(s)	17, 41
Fsp4HI	GCNGC	2 cut(s)	141, 171
GlaI	GCGC	2 cut(s)	23, 79
GluI	GCNGC	2 cut(s)	141, 171
HaeIII	GGCC	3 cut(s)	143, 177, 247
HapII	CCGG	3 cut(s)	161, 174, 248
HhaI	GCGC	2 cut(s)	24, 80
Hin1I	GRCGYC	1 cut(s)	191
Hin6I	GCGC	2 cut(s)	22, 78
HinP1I	GCGC	2 cut(s)	22, 78
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	3 cut(s)	161, 174, 248
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	4 cut(s)	64, 196, 280, 292
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	158
HpyCH4IV	ACGT	2 cut(s)	135, 191
HpyCH4V	TGCA	1 cut(s)	8
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	2 cut(s)	135, 191
Hsp92I	GRCGYC	1 cut(s)	191
HspAI	GCGC	2 cut(s)	22, 78
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	268, 280
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	6 cut(s)	109, 130, 157, 174, 187, 261
Lsp1109I	GCAGC	1 cut(s)	182
MaeII	ACGT	2 cut(s)	135, 191
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	2 cut(s)	270, 282
MboI	GATC	2 cut(s)	268, 280
MboII	GAAGA	3 cut(s)	61, 80, 248
MflI	RGATCY	2 cut(s)	268, 280
MluCI	AATT	3 cut(s)	39, 200, 274
MroNI	GCCGGC	1 cut(s)	173
MspI	CCGG	3 cut(s)	161, 174, 248
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
MvnI	CGCG	2 cut(s)	24, 80
NaeI	GCCGGC	1 cut(s)	175
NdeII	GATC	2 cut(s)	268, 280
NgoMIV	GCCGGC	1 cut(s)	173
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	85
NspV	TTCGAA	1 cut(s)	216
PdiI	GCCGGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	257
PflFI	GACNNNGTC	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	142, 172
PmaCI	CACGTG	1 cut(s)	136
PmlI	CACGTG	1 cut(s)	136
Ppu21I	YACGTR	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	143
PspCI	CACGTG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	176
PsuI	RGATCY	2 cut(s)	268, 280
PsyI	GACNNNGTC	1 cut(s)	190
SatI	GCNGC	2 cut(s)	141, 171
Sau3AI	GATC	2 cut(s)	268, 280
Sau96I	GGNCC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	145
SetI	ASST	4 cut(s)	102, 138, 194, 302
SfuI	TTCGAA	1 cut(s)	216
Sse9I	AATT	3 cut(s)	39, 200, 274
SsiI	CCGC	3 cut(s)	80, 140, 254
StyD4I	CCNGG	1 cut(s)	143
TaiI	ACGT	2 cut(s)	138, 194
TaqI	TCGA	1 cut(s)	216
TasI	AATT	3 cut(s)	39, 200, 274
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	257
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	85
TspGWI	ACGGA	1 cut(s)	104
Tth111I	GACNNNGTC	1 cut(s)	190
ZraI	GACGTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.