Rmu_sc0039328.1_g000001

Superkiller viralicidic activity 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039328.1
OG0005703
Physical Location & Seq
Forward (+)
580 .. 1593
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039328.1_g000001.1.cds

Sequence Viewer

Length: 1014 bp
atggaagaatctcaaacacttggaaaacgaaaagagcctgaagggtctgagaatttagaaaaccctaatgaagggtctcccctgaagcgaagaaacttcactagaacatgtatgcatgaggttgcagtccctagtgggtatgctcccaccaaggatgagtcggttcacggaaccctctcgaatcctgtgtttgaagggaagatggctaagacgtataagtttgagcttgatccgtttcagcagatatctgtggcgtgtttagagaggaatgagtcggttttggtgtcggcgcatacttcggcggggaagactgcggtggcggagtatgcgattgctatggcgtttagggataagcagagggttatatatacttcgccggtgaaggcattgagcaatcagaagtatcgggagttcaaccaggagtttgaagatgtcggattgatgactggagatgttacgatatcgcctaatgctagttgtttggtcatgactactgagatccttagaggaatgctttacaggggttcggaggttttgaaggaagttgcgtgggttatctttgatgagattcattacatgaaggatcgggaaagaggggtggtttgggaagagagtattatatttatgccgccggctgttaaaatggtgtttctttcagccacaatgtcgaatgccactgagtttgcggaatggatttgtaatgtgcacaagcagccttgtcatgtggtgtacacagattttcgaccgactcctctgcagcattacattttcccagtgggtgggaatggcttgtatcttgtggtggacgagaatgaacaattcaaggaggacaattttatgaagctgcaggataatttctccaagcagaaagtgggtgaaggtcagaggagtgcaaatggcaagggaagtgggagaattgcaaaaggcgggagtgctgcatctgggggttctgacatattcaaaattgtgaaggtgtgctctttagttctaactcttgatttccttgttgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003002 GO:0003006 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009892 GO:0009893 GO:0009908 GO:0009987 GO:0010093 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0055087 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

337

Amino Acids

37.67

Weight (kDa)

5.89

Isoelectric Point (pI)

49.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 779
AciI CCGC 6 cut(s) 302, 314, 320, 629, 686, 927
AclWI GGATC 3 cut(s) 224, 493, 591
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 2 cut(s) 60, 104
AfaI GTAC 1 cut(s) 731
AfiI CCNNNNNNNGG 2 cut(s) 71, 779
AflIII ACRYGT 1 cut(s) 107
AgsI TTSAA 6 cut(s) 194, 415, 428, 538, 823, 961
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 2 cut(s) 226, 844
AluI AGCT 2 cut(s) 226, 844
Alw21I GWGCWC 2 cut(s) 708, 980
Alw26I GTCTC 1 cut(s) 81
Alw44I GTGCAC 1 cut(s) 704
AlwI GGATC 3 cut(s) 224, 493, 591
ApaLI GTGCAC 1 cut(s) 704
ApeKI GCWGC 4 cut(s) 712, 757, 844, 935
ApoI RAATTY 1 cut(s) 52
AspLEI GCGC 1 cut(s) 292
AsuHPI GGTGA 2 cut(s) 391, 887
BaeGI GKGCMC 1 cut(s) 708
BbsI GAAGAC 1 cut(s) 314
Bbv12I GWGCWC 2 cut(s) 708, 980
BbvI GCAGC 4 cut(s) 724, 769, 831, 922
BccI CCATC 1 cut(s) 196
BcgI CGANNNNNNTGC 2 cut(s) 736, 770
BciT130I CCWGG 1 cut(s) 419
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 3 cut(s) 102, 132, 474
BfmI CTRYAG 2 cut(s) 755, 845
BisI GCNGC 5 cut(s) 629, 713, 758, 845, 936
BlsI GCNGC 5 cut(s) 630, 714, 759, 846, 937
Bme1390I CCNGG 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 419
BmrI ACTGGG 1 cut(s) 767
BmsI GCATC 1 cut(s) 947
BmuI ACTGGG 1 cut(s) 767
BpiI GAAGAC 1 cut(s) 314
BpmI CTGGAG 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 779
Bse118I RCCGGY 2 cut(s) 376, 631
Bse1I ACTGG 2 cut(s) 451, 773
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 2 cut(s) 71, 779
BseMII CTCAG 3 cut(s) 39, 486, 669
BseNI ACTGG 2 cut(s) 451, 773
BseRI GAGGAG 2 cut(s) 741, 901
BseSI GKGCMC 1 cut(s) 708
BseXI GCAGC 4 cut(s) 724, 769, 831, 922
Bsh1285I CGRYCG 1 cut(s) 746
BsiEI CGRYCG 1 cut(s) 746
BsiHKAI GWGCWC 2 cut(s) 708, 980
BsiSI CCGG 2 cut(s) 377, 632
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 71, 779
BsmAI GTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 2 cut(s) 516, 676
Bso31I GGTCTC 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 708, 980
Bsp1407I TGTACA 1 cut(s) 729
Bsp143I GATC 3 cut(s) 229, 498, 583
BspACI CCGC 6 cut(s) 302, 314, 320, 629, 686, 927
BspCNI CTCAG 3 cut(s) 40, 487, 670
BspHI TCATGA 1 cut(s) 486
BspLI GGNNCC 1 cut(s) 172
BspMAI CTGCAG 2 cut(s) 759, 849
BspPI GGATC 3 cut(s) 224, 493, 591
BspTNI GGTCTC 1 cut(s) 81
BsrFI RCCGGY 2 cut(s) 376, 631
BsrGI TGTACA 1 cut(s) 729
BsrI ACTGG 2 cut(s) 451, 773
BssAI RCCGGY 2 cut(s) 376, 631
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 3 cut(s) 229, 498, 583
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 419
Bst6I CTCTTC 1 cut(s) 603
BstAUI TGTACA 1 cut(s) 729
BstC8I GCNNGC 1 cut(s) 633
BstDEI CTNAG 5 cut(s) 48, 207, 495, 503, 678
BstENI CCTNNNNNAGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 3 cut(s) 232, 501, 586
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 3 cut(s) 229, 498, 583
BstMCI CGRYCG 1 cut(s) 746
BstMWI GCNNNNNNNGC 2 cut(s) 326, 712
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 2 cut(s) 755, 845
BstSLI GKGCMC 1 cut(s) 708
BstV1I GCAGC 4 cut(s) 724, 769, 831, 922
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 498
BstYI RGATCY 1 cut(s) 498
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 2 cut(s) 675, 780
Cac8I GCNNGC 1 cut(s) 633
CciI TCATGA 1 cut(s) 486
CfoI GCGC 1 cut(s) 292
Cfr10I RCCGGY 2 cut(s) 376, 631
Csp6I GTAC 1 cut(s) 730
CspCI CAANNNNNGTGG 4 cut(s) 664, 699, 889, 924
CviAII CATG 5 cut(s) 108, 116, 487, 577, 722
CviJI RGCY 8 cut(s) 37, 206, 226, 635, 659, 715, 789, 844
CviKI_1 RGCY 8 cut(s) 37, 206, 226, 635, 659, 715, 789, 844
CviQI GTAC 1 cut(s) 730
DdeI CTNAG 5 cut(s) 48, 207, 495, 503, 678
DpnI GATC 3 cut(s) 231, 500, 585
DpnII GATC 3 cut(s) 229, 498, 583
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
EciI GGCGGA 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 81
Eco32I GATATC 2 cut(s) 246, 462
Eco57I CTGAAG 2 cut(s) 60, 104
EcoNI CCTNNNNNAGG 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 417
EcoRV GATATC 2 cut(s) 246, 462
EcoT14I CCWWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 5 cut(s) 111, 119, 490, 580, 725
FaqI GGGAC 1 cut(s) 113
FatI CATG 5 cut(s) 107, 115, 486, 576, 721
FauI CCCGC 2 cut(s) 295, 920
Fnu4HI GCNGC 5 cut(s) 629, 713, 758, 845, 936
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 5 cut(s) 629, 713, 758, 845, 936
FspBI CTAG 3 cut(s) 102, 132, 474
GlaI GCGC 1 cut(s) 291
GluI GCNGC 5 cut(s) 629, 713, 758, 845, 936
GsuI CTGGAG 1 cut(s) 468
HapII CCGG 2 cut(s) 377, 632
HhaI GCGC 1 cut(s) 292
Hin1II CATG 5 cut(s) 111, 119, 490, 580, 725
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HinfI GANTC 6 cut(s) 8, 158, 181, 272, 568, 748
HpaII CCGG 2 cut(s) 377, 632
HphI GGTGA 2 cut(s) 391, 887
Hpy166II GTNNAC 5 cut(s) 166, 706, 730, 732, 805
Hpy188I TCNGA 6 cut(s) 49, 399, 437, 529, 885, 952
Hpy188III TCNNGA 5 cut(s) 178, 407, 487, 587, 995
Hpy8I GTNNAC 5 cut(s) 166, 706, 730, 732, 805
HpyAV CCTTC 8 cut(s) 35, 65, 188, 376, 532, 574, 872, 964
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 8 cut(s) 115, 125, 706, 757, 847, 893, 920, 938
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 712
HpyF3I CTNAG 5 cut(s) 48, 207, 495, 503, 678
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 5 cut(s) 111, 119, 490, 580, 725
HspAI GCGC 1 cut(s) 290
KroI GCCGGC 1 cut(s) 631
KroNI GCCGGC 1 cut(s) 633
Kzo9I GATC 3 cut(s) 229, 498, 583
LmnI GCTCC 1 cut(s) 148
Lsp1109I GCAGC 4 cut(s) 724, 769, 831, 922
LweI GCATC 1 cut(s) 947
MaeI CTAG 3 cut(s) 102, 132, 474
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 454
MalI GATC 3 cut(s) 231, 500, 585
MboI GATC 3 cut(s) 229, 498, 583
MboII GAAGA 6 cut(s) 17, 102, 211, 319, 440, 620
MflI RGATCY 1 cut(s) 498
MhlI GDGCHC 2 cut(s) 708, 980
MluCI AATT 6 cut(s) 52, 818, 832, 853, 915, 963
MlyI GAGTC 3 cut(s) 167, 281, 742
MmeI TCCRAC 1 cut(s) 415
Mph1103I ATGCAT 1 cut(s) 117
MroNI GCCGGC 1 cut(s) 631
MseI TTAA 1 cut(s) 639
MspI CCGG 2 cut(s) 377, 632
MspR9I CCNGG 1 cut(s) 419
Mva1269I GAATGC 2 cut(s) 516, 676
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 326, 712
NaeI GCCGGC 1 cut(s) 633
NdeII GATC 3 cut(s) 229, 498, 583
NgoMIV GCCGGC 1 cut(s) 631
NlaIII CATG 5 cut(s) 111, 119, 490, 580, 725
NlaIV GGNNCC 1 cut(s) 172
NsiI ATGCAT 1 cut(s) 117
NspI RCATGY 1 cut(s) 111
PagI TCATGA 1 cut(s) 486
PciI ACATGT 1 cut(s) 107
PctI GAATGC 2 cut(s) 516, 676
PdiI GCCGGC 1 cut(s) 633
PfeI GAWTC 3 cut(s) 8, 181, 568
PflMI CCANNNNNTGG 1 cut(s) 779
PkrI GCNGC 5 cut(s) 630, 714, 759, 846, 937
PleI GAGTC 3 cut(s) 166, 280, 742
PpsI GAGTC 3 cut(s) 166, 280, 742
PscI ACATGT 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 417
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 172
PsrI GAACNNNNNNTAC 2 cut(s) 395, 427
PstI CTGCAG 2 cut(s) 759, 849
PsuI RGATCY 1 cut(s) 498
RsaI GTAC 1 cut(s) 731
RsaNI GTAC 1 cut(s) 730
SaqAI TTAA 1 cut(s) 639
SatI GCNGC 5 cut(s) 629, 713, 758, 845, 936
Sau3AI GATC 3 cut(s) 229, 498, 583
SchI GAGTC 3 cut(s) 167, 281, 742
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 2 cut(s) 708, 980
SetI ASST 7 cut(s) 123, 215, 228, 534, 846, 883, 975
SfaNI GCATC 1 cut(s) 947
SfcI CTRYAG 2 cut(s) 755, 845
SgrAI CRCCGGYG 1 cut(s) 376
Sse9I AATT 6 cut(s) 52, 818, 832, 853, 915, 963
SsiI CCGC 6 cut(s) 302, 314, 320, 629, 686, 927
SspMI CTAG 3 cut(s) 102, 132, 474
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 1 cut(s) 150
TaiI ACGT 1 cut(s) 215
TaqI TCGA 3 cut(s) 179, 668, 742
TaqII GACCGA 1 cut(s) 760
TasI AATT 6 cut(s) 52, 818, 832, 853, 915, 963
TatI WGTACW 1 cut(s) 729
TauI GCSGC 1 cut(s) 631
TfiI GAWTC 3 cut(s) 8, 181, 568
Tru1I TTAA 1 cut(s) 639
Tru9I TTAA 1 cut(s) 639
TscAI CASTG 2 cut(s) 682, 780
TseI GCWGC 4 cut(s) 712, 757, 844, 935
TspDTI ATGAA 5 cut(s) 84, 560, 593, 828, 854
TspGWI ACGGA 2 cut(s) 183, 222
TspRI CASTG 2 cut(s) 682, 780
Van91I CCANNNNNTGG 1 cut(s) 779
VneI GTGCAC 1 cut(s) 704
XagI CCTNNNNNAGG 1 cut(s) 69
XapI RAATTY 1 cut(s) 52
XceI RCATGY 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 868
XspI CTAG 3 cut(s) 102, 132, 474
Zsp2I ATGCAT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.