Rorug04G0004000

Superkiller viralicidic activity 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005703
Physical Location & Seq
Forward (+)
811583 .. 812125
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0004000.1

Sequence Viewer

Length: 543 bp
ATGTTTCACTTTCAGGGTATTACCTCCCCAGTTCTCCCGCCTGTTGGTAGGTCTCTGTTTGGAGGAGCTGAGACAAGCAAGGTACGCAAACCTGTTGTAATTCGTAGTGCAGGCAAAAGACCTGCTAGTGAGGATAACTCGCTGACTCTGGTACCTGTGGACGCCGAACAACAAGCAAAGAGGGATAGGTCCTTCCCGTCCCCAAAAGAGCTACAATTCCTGATGTTTGATTTACTGGAAGGCAGGACAAGCCCTGTTGCTCCCTCCAAGAAAATAAAAGTGCCTGAATTCCCTACCAAGTTTAATGCTAAATCTCTGGGAATAGTGGAGACACCAGGTGGTATGTTGGTACTTGCTGAGGTTATGATGCCCAAACCTGTACAAGTGGAGCTTCCTGGTGGAAAAAAGAAGAGAGGTCGGCCTTTGGGATCAAAAAATAAAAATCCCTCTAAAGCAAAGAAAGTTCCTGCTGAAGATATCCTGAATGTTTTGTATTCAGGTAAGCCTCCTAGCCCTAGCTTGAAGGGCAAGGAGAAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003002 GO:0003006 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009892 GO:0009893 GO:0009908 GO:0009987 GO:0010093 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0055087 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

180

Amino Acids

19.49

Weight (kDa)

10.21

Isoelectric Point (pI)

62.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 130
Acc65I GGTACC 1 cut(s) 151
AccB1I GGYRCC 1 cut(s) 151
AciI CCGC 1 cut(s) 38
AclWI GGATC 1 cut(s) 436
AcsI RAATTY 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 492
AcyI GRCGYC 1 cut(s) 162
AdeI CACNNNGTG 1 cut(s) 338
AfaI GTAC 4 cut(s) 84, 153, 351, 381
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 523
AjnI CCWGG 2 cut(s) 334, 394
AluBI AGCT 4 cut(s) 68, 211, 391, 519
AluI AGCT 4 cut(s) 68, 211, 391, 519
Alw26I GTCTC 3 cut(s) 57, 65, 323
AlwI GGATC 1 cut(s) 436
AoxI GGCC 1 cut(s) 419
ApoI RAATTY 1 cut(s) 287
Asp718I GGTACC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 189
AvaII GGWCC 1 cut(s) 189
BaeI ACNNNNGTAYC 2 cut(s) 135, 168
BanI GGYRCC 1 cut(s) 151
BbvCI CCTCAGC 1 cut(s) 357
BciT130I CCWGG 2 cut(s) 336, 396
BcoDI GTCTC 3 cut(s) 57, 65, 323
BfaI CTAG 3 cut(s) 126, 510, 516
BfuAI ACCTGC 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 336, 396
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 2 cut(s) 336, 396
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 357
BmuI ACTGGG 1 cut(s) 23
BplI GAGNNNNNCTC 2 cut(s) 122, 154
Bpu10I CCTNAGC 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 57
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 2 cut(s) 29, 240
BseBI CCWGG 2 cut(s) 336, 396
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 2 cut(s) 60, 348
BseNI ACTGG 2 cut(s) 29, 240
BseRI GAGGAG 1 cut(s) 78
BsgI GTGCAG 1 cut(s) 129
BshFI GGCC 1 cut(s) 421
BshNI GGYRCC 1 cut(s) 151
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 3 cut(s) 57, 65, 323
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 421
Bso31I GGTCTC 1 cut(s) 57
Bsp1407I TGTACA 1 cut(s) 379
Bsp143I GATC 1 cut(s) 428
BspACI CCGC 1 cut(s) 38
BspANI GGCC 1 cut(s) 421
BspCNI CTCAG 2 cut(s) 61, 349
BspLI GGNNCC 1 cut(s) 153
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 436
BspT107I GGYRCC 1 cut(s) 151
BspTNI GGTCTC 1 cut(s) 57
BsrGI TGTACA 1 cut(s) 379
BsrI ACTGG 2 cut(s) 29, 240
BssMI GATC 1 cut(s) 428
BssNI GRCGYC 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 336, 396
Bst6I CTCTTC 1 cut(s) 404
BstACI GRCGYC 1 cut(s) 162
BstAUI TGTACA 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 69, 357
BstKTI GATC 1 cut(s) 431
BstMAI GTCTC 3 cut(s) 57, 65, 323
BstMBI GATC 1 cut(s) 428
BstMWI GCNNNNNNNGC 3 cut(s) 84, 249, 525
BstNI CCWGG 2 cut(s) 336, 396
BstSCI CCNGG 2 cut(s) 334, 394
BsuRI GGCC 1 cut(s) 421
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 189
CseI GACGC 1 cut(s) 170
CsiI ACCWGGT 1 cut(s) 334
Csp6I GTAC 4 cut(s) 83, 152, 350, 380
CviJI RGCY 8 cut(s) 68, 211, 252, 391, 421, 505, 513, 519
CviKI_1 RGCY 8 cut(s) 68, 211, 252, 391, 421, 505, 513, 519
CviQI GTAC 4 cut(s) 83, 152, 350, 380
DdeI CTNAG 2 cut(s) 69, 357
DpnI GATC 1 cut(s) 430
DpnII GATC 1 cut(s) 428
DraIII CACNNNGTG 1 cut(s) 338
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
Eco31I GGTCTC 1 cut(s) 57
Eco32I GATATC 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 492
EcoO109I RGGNCCY 1 cut(s) 189
EcoRI GAATTC 1 cut(s) 287
EcoRII CCWGG 2 cut(s) 334, 394
EcoRV GATATC 1 cut(s) 478
FaiI YATR 3 cut(s) 344, 365, 541
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 184
FauI CCCGC 1 cut(s) 45
FspBI CTAG 3 cut(s) 126, 510, 516
HaeIII GGCC 1 cut(s) 421
HgaI GACGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 162
HinfI GANTC 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 220, 481
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 3 cut(s) 202, 233, 517
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 249, 525
HpyF3I CTNAG 2 cut(s) 69, 357
Hsp92I GRCGYC 1 cut(s) 162
KpnI GGTACC 1 cut(s) 155
Kzo9I GATC 1 cut(s) 428
LmnI GCTCC 3 cut(s) 65, 265, 388
LweI GCATC 1 cut(s) 357
MabI ACCWGGT 1 cut(s) 334
MaeI CTAG 3 cut(s) 126, 510, 516
MalI GATC 1 cut(s) 430
MboI GATC 1 cut(s) 428
MboII GAAGA 2 cut(s) 421, 485
MluCI AATT 3 cut(s) 99, 215, 287
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 9 cut(s) 34, 56, 124, 174, 274, 352, 407, 457, 516
MseI TTAA 1 cut(s) 303
MspR9I CCNGG 2 cut(s) 336, 396
MvaI CCWGG 2 cut(s) 336, 396
MwoI GCNNNNNNNGC 3 cut(s) 84, 249, 525
NdeII GATC 1 cut(s) 428
NlaIV GGNNCC 1 cut(s) 153
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PpuMI RGGWCCY 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 334, 394
PspGI CCWGG 2 cut(s) 334, 394
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 189
PspPPI RGGWCCY 1 cut(s) 189
RsaI GTAC 4 cut(s) 84, 153, 351, 381
RsaNI GTAC 4 cut(s) 83, 152, 350, 380
SaqAI TTAA 1 cut(s) 303
Sau3AI GATC 1 cut(s) 428
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 2 cut(s) 336, 396
SexAI ACCWGGT 1 cut(s) 334
SfaNI GCATC 1 cut(s) 357
SinI GGWCC 1 cut(s) 189
Sse9I AATT 3 cut(s) 99, 215, 287
SsiI CCGC 1 cut(s) 38
SspMI CTAG 3 cut(s) 126, 510, 516
StyD4I CCNGG 2 cut(s) 334, 394
TasI AATT 3 cut(s) 99, 215, 287
TatI WGTACW 1 cut(s) 379
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 189
XapI RAATTY 1 cut(s) 287
XspI CTAG 3 cut(s) 126, 510, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.