Rorug04G0003900

Superkiller viralicidic activity 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005703
Physical Location & Seq
Reverse (-)
769587 .. 770629
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0003900.1

Sequence Viewer

Length: 762 bp
ATGGTTGCAGGTGACAAGAATTATTTGCCTGACGCGCTCACAAGAGAAATGGCCATGTTCAATAGAGATGAAAGACGCAATCCGCGAAGCAAAATACCAGAACTTGAAGAAAAAAGTATTTGGAAAAGATATAAGAGTGGTGACAAAACAATTGGACCCTTGCATGATGGACCAGGCTATCAGTACATAGTATCCTACAGCAAACCAGACACGAGTCAAGGTACTGAAAGGGTTAGATTGCCCAAACAAGATCCCAAAGAAAACAATTCAGCTTGGCAAGATGAAGTGCAGTCTGTTAAGTCCAATGATGAAGAAAAACTCTTAAATGAATTTCTGCTACATCTGAAAGGAGCAACCACAACTGATCGATCCCAGGAGAAAGGATCGGCTAGCCAGTCTCAAATGGCAGACGGTAAAGTCATATCAAGTCCGTTGATGGTTGATGGTTGCTGCTTTGCCAAAAAGCAGGCAAAACCCTTTTGGAAACCTGTATTCATAATAGATAGAGTTTTAACCTTCAAACAGAAGCTTATTTTAGATAATATTCTCAGCGCTTTCTATGAAGGTAATGAGAATCATATTCTTCAGTGTCTAGAAGCTTTAACAGAAGAATTGTATGAAATCCATACAAAAGAGAAAACTACTCCAGTTAAGAATCCCAACATTTTATATTTTGAAAATCCAAAAAGTGCTAAAGTCCCTGTGATTGATGTTGTTGCAGAAAAGAATTCAATGCTGGAAACGAATGCGGTAGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003002 GO:0003006 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009892 GO:0009893 GO:0009908 GO:0009987 GO:0010093 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0055087 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

253

Amino Acids

28.77

Weight (kDa)

6.17

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 416
AccII CGCG 2 cut(s) 35, 85
AciI CCGC 2 cut(s) 83, 749
AclWI GGATC 3 cut(s) 245, 363, 391
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 2 cut(s) 329, 727
AcuI CTGAAG 1 cut(s) 569
AfaI GTAC 2 cut(s) 185, 223
AfeI AGCGCT 1 cut(s) 553
AgsI TTSAA 5 cut(s) 61, 107, 520, 677, 732
AjnI CCWGG 2 cut(s) 172, 372
AluBI AGCT 4 cut(s) 272, 529, 599, 755
AluI AGCT 4 cut(s) 272, 529, 599, 755
Alw26I GTCTC 1 cut(s) 402
AlwI GGATC 3 cut(s) 245, 363, 391
Aor51HI AGCGCT 1 cut(s) 553
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 450
ApoI RAATTY 2 cut(s) 329, 727
AspLEI GCGC 2 cut(s) 37, 554
AspS9I GGNCC 2 cut(s) 155, 170
AsuHPI GGTGA 2 cut(s) 23, 152
AsuNHI GCTAGC 1 cut(s) 389
AvaII GGWCC 2 cut(s) 155, 170
BalI TGGCCA 1 cut(s) 53
BauI CACGAG 1 cut(s) 211
BbvI GCAGC 1 cut(s) 437
BccI CCATC 3 cut(s) 161, 430, 437
BciT130I CCWGG 2 cut(s) 174, 374
BciVI GTATCC 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 2 cut(s) 390, 593
BfmI CTRYAG 1 cut(s) 196
BfoI RGCGCY 1 cut(s) 555
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 1 cut(s) 451
BlsI GCNGC 1 cut(s) 452
Bme1390I CCNGG 2 cut(s) 174, 374
Bme18I GGWCC 2 cut(s) 155, 170
BmgT120I GGNCC 2 cut(s) 155, 170
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 2 cut(s) 174, 374
BmtI GCTAGC 1 cut(s) 393
BoxI GACNNNNGTC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 630
Bsa29I ATCGAT 1 cut(s) 367
BsaJI CCNNGG 1 cut(s) 372
Bse1I ACTGG 2 cut(s) 394, 647
BseBI CCWGG 2 cut(s) 174, 374
BseCI ATCGAT 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 372
BseMII CTCAG 1 cut(s) 562
BseNI ACTGG 2 cut(s) 394, 647
BseXI GCAGC 1 cut(s) 437
BsgI GTGCAG 1 cut(s) 308
Bsh1236I CGCG 2 cut(s) 35, 85
BshFI GGCC 1 cut(s) 53
BshVI ATCGAT 1 cut(s) 367
BslFI GGGAC 1 cut(s) 683
BsmAI GTCTC 1 cut(s) 402
BsmFI GGGAC 1 cut(s) 683
BsmI GAATGC 1 cut(s) 751
BsnI GGCC 1 cut(s) 53
Bsp143I GATC 4 cut(s) 250, 364, 368, 383
BspACI CCGC 2 cut(s) 83, 749
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 561
BspDI ATCGAT 1 cut(s) 367
BspFNI CGCG 2 cut(s) 35, 85
BspLI GGNNCC 1 cut(s) 157
BspOI GCTAGC 1 cut(s) 393
BspPI GGATC 3 cut(s) 245, 363, 391
BsrI ACTGG 2 cut(s) 394, 647
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 4 cut(s) 250, 364, 368, 383
BssSI CACGAG 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 211
Bst2UI CCWGG 2 cut(s) 174, 374
Bst4CI ACNGT 1 cut(s) 413
BstC8I GCNNGC 2 cut(s) 391, 468
BstDEI CTNAG 1 cut(s) 548
BstFNI CGCG 2 cut(s) 35, 85
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 2 cut(s) 37, 554
BstKTI GATC 4 cut(s) 253, 367, 371, 386
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 4 cut(s) 250, 364, 368, 383
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 2 cut(s) 174, 374
BstPAI GACNNNNGTC 1 cut(s) 213
BstSCI CCNGG 2 cut(s) 172, 372
BstSFI CTRYAG 1 cut(s) 196
BstUI CGCG 2 cut(s) 35, 85
BstV1I GCAGC 1 cut(s) 437
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
Bsu15I ATCGAT 1 cut(s) 367
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 1 cut(s) 53
BsuTUI ATCGAT 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 593
Cac8I GCNNGC 2 cut(s) 391, 468
CfoI GCGC 2 cut(s) 37, 554
Cfr13I GGNCC 2 cut(s) 155, 170
ClaI ATCGAT 1 cut(s) 367
CseI GACGC 2 cut(s) 41, 84
Csp6I GTAC 2 cut(s) 184, 222
CviAII CATG 2 cut(s) 55, 164
CviJI RGCY 8 cut(s) 53, 177, 272, 389, 393, 529, 599, 755
CviKI_1 RGCY 8 cut(s) 53, 177, 272, 389, 393, 529, 599, 755
CviQI GTAC 2 cut(s) 184, 222
DdeI CTNAG 1 cut(s) 548
DpnI GATC 4 cut(s) 252, 366, 370, 385
DpnII GATC 4 cut(s) 250, 364, 368, 383
DrdI GACNNNNNNGTC 1 cut(s) 416
DseDI GACNNNNNNGTC 1 cut(s) 416
EaeI YGGCCR 1 cut(s) 51
Eco47I GGWCC 2 cut(s) 155, 170
Eco47III AGCGCT 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 569
EcoRI GAATTC 1 cut(s) 727
EcoRII CCWGG 2 cut(s) 172, 372
FaeI CATG 2 cut(s) 58, 167
FaqI GGGAC 1 cut(s) 683
FatI CATG 2 cut(s) 54, 163
Fnu4HI GCNGC 1 cut(s) 451
Fsp4HI GCNGC 1 cut(s) 451
FspBI CTAG 2 cut(s) 390, 593
GlaI GCGC 2 cut(s) 36, 553
GluI GCNGC 1 cut(s) 451
GsuI CTGGAG 1 cut(s) 630
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 1 cut(s) 53
HgaI GACGC 2 cut(s) 41, 84
HhaI GCGC 2 cut(s) 37, 554
Hin1II CATG 2 cut(s) 58, 167
Hin6I GCGC 2 cut(s) 35, 552
HinP1I GCGC 2 cut(s) 35, 552
HindIII AAGCTT 2 cut(s) 527, 597
HinfI GANTC 3 cut(s) 214, 574, 655
HphI GGTGA 2 cut(s) 23, 152
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 1 cut(s) 593
HpyAV CCTTC 2 cut(s) 526, 557
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4V TGCA 4 cut(s) 8, 163, 289, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 1 cut(s) 548
Hsp92II CATG 2 cut(s) 58, 167
HspAI GCGC 2 cut(s) 35, 552
Kzo9I GATC 4 cut(s) 250, 364, 368, 383
LmnI GCTCC 1 cut(s) 350
Lsp1109I GCAGC 1 cut(s) 437
MaeI CTAG 2 cut(s) 390, 593
MaeIII GTNAC 2 cut(s) 11, 140
MalI GATC 4 cut(s) 252, 366, 370, 385
MboI GATC 4 cut(s) 250, 364, 368, 383
MboII GAAGA 4 cut(s) 119, 323, 575, 620
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 1 cut(s) 250
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 6 cut(s) 19, 150, 265, 329, 611, 727
MluNI TGGCCA 1 cut(s) 53
MlyI GAGTC 1 cut(s) 223
Mox20I TGGCCA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 53
MseI TTAA 5 cut(s) 297, 323, 512, 602, 651
Msp20I TGGCCA 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 174, 374
MunI CAATTG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 751
MvaI CCWGG 2 cut(s) 174, 374
MvnI CGCG 2 cut(s) 35, 85
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 4 cut(s) 250, 364, 368, 383
NheI GCTAGC 1 cut(s) 389
NlaIII CATG 2 cut(s) 58, 167
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 2 cut(s) 11, 140
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PctI GAATGC 1 cut(s) 751
PfeI GAWTC 2 cut(s) 574, 655
PkrI GCNGC 1 cut(s) 452
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PshAI GACNNNNGTC 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 172, 372
PspGI CCWGG 2 cut(s) 172, 372
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 2 cut(s) 155, 170
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 2 cut(s) 185, 223
RsaNI GTAC 2 cut(s) 184, 222
SaqAI TTAA 5 cut(s) 297, 323, 512, 602, 651
SatI GCNGC 1 cut(s) 451
Sau3AI GATC 4 cut(s) 250, 364, 368, 383
Sau96I GGNCC 2 cut(s) 155, 170
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 2 cut(s) 174, 374
SetI ASST 9 cut(s) 13, 223, 274, 490, 518, 531, 568, 601, 757
SfcI CTRYAG 1 cut(s) 196
SinI GGWCC 2 cut(s) 155, 170
Sse9I AATT 6 cut(s) 19, 150, 265, 329, 611, 727
SsiI CCGC 2 cut(s) 83, 749
SspI AATATT 1 cut(s) 544
SspMI CTAG 2 cut(s) 390, 593
StyD4I CCNGG 2 cut(s) 172, 372
TaaI ACNGT 1 cut(s) 413
TaqI TCGA 1 cut(s) 367
TasI AATT 6 cut(s) 19, 150, 265, 329, 611, 727
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 2 cut(s) 574, 655
Tru1I TTAA 5 cut(s) 297, 323, 512, 602, 651
Tru9I TTAA 5 cut(s) 297, 323, 512, 602, 651
TscAI CASTG 1 cut(s) 593
TseFI GTSAC 2 cut(s) 11, 140
TseI GCWGC 1 cut(s) 450
Tsp45I GTSAC 2 cut(s) 11, 140
TspDTI ATGAA 7 cut(s) 84, 297, 324, 342, 484, 576, 633
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 1 cut(s) 593
VpaK11BI GGWCC 2 cut(s) 155, 170
XapI RAATTY 2 cut(s) 329, 727
XbaI TCTAGA 1 cut(s) 592
XspI CTAG 2 cut(s) 390, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.