Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041897.1

Orthogroup ID

OG0014539

Physical Location & Seq

Genomic Coordinates Reverse (-)

1879 .. 2709

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041897.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atggcgcaggtgtacattataggtggagatggcacaatgcggggggcagttgagatatttcatgagatttgtaagcgaaaactgcacattgcggttactgggattccaaaaacagttgacaatgatgttggcatcattgacagatctttcggattccagacagcagtagaaatggcccagcaggcaatcagtgcagctcatgtggaggctgaaagtgcagtgaatggaataggcttggtcaagttaatgggtcgaagtacaggccacattgctctccatgcaacattgagcagccgagacgtggactgctgcctaatcccagaaactgagttttacctggaaggaaaaggagggctttttgaatttcttgagcagcgactgagggagaatggacatgcagtgttagttgtggctgaaggagcgggacaggacataattccaaggaacgaggctcagaaacaggagagggatgaatctgggaacccagtgttcctagatgttggccaatggttgaagtcggagctcaagaattggtggagcagggatcaccccagtgagctcttcacagtcaagtacatagatcctacatacatgatacgggccgtccctgcaaatgctacggataacttgtactgtacacttcttgcccattcagccattcatggagtgatggctggttacactggattcgtccctggccctgtcaatggcaactatgcttacattccagttgaagaggtagcaaaggctaagaatgaggtcaacacgagagaccaccaatgggcgtgggtaaggtccgtcacaaaccagcctgattttatgaggacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003872 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008443 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019200 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044262 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046835 GO:0046939 GO:0051186 GO:0051188 GO:0055086 GO:0061615 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00052 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04152 ko05230 map00010 map00030 map00051 map00052 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04152 map05230

Pfam Domains

Protein Families

PFK

Protein Analysis

276

Amino Acids

30.51

Weight (kDa)

5.57

Isoelectric Point (pI)

30.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47810
fragaria_vesca	FvH4_3g00180
malus_domestica	MD05G1363600.v1.1
prunus_persica	Prupe.4G002000_v2.0.a1
pyrus_communis	pycom05g32980
rosa_chinensis	RchiOBHm_Chr5g0000241
rosa_laevigata	RLG00000030852
rosa_multiflora	Rmu_co8387729.1_g000001 Rmu_sc0003320.1_g000002 Rmu_sc0041897.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075860
rosa_rugosa	Rorug04G0382700
rosa_samantha	Rh5AG001700 Rh5BG003100 Rh5CG002000 Rh5DG002000
rosa_wichuraiana	Rw5G000220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	422
AciI	CCGC	3 cut(s)	40, 92, 422
AclWI	GGATC	2 cut(s)	552, 575
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	5 cut(s)	14, 259, 575, 632, 637
AfiI	CCNNNNNNNGG	3 cut(s)	301, 707, 781
AgsI	TTSAA	3 cut(s)	362, 514, 734
AjiI	CACGTC	1 cut(s)	301
AjnI	CCWGG	2 cut(s)	336, 694
AleI	CACNNNNGTG	1 cut(s)	552
AluBI	AGCT	3 cut(s)	197, 523, 559
AluI	AGCT	3 cut(s)	197, 523, 559
Alw21I	GWGCWC	2 cut(s)	525, 561
Alw26I	GTCTC	2 cut(s)	291, 765
AlwI	GGATC	2 cut(s)	552, 575
AlwNI	CAGNNNCTG	2 cut(s)	326, 379
AoxI	GGCC	5 cut(s)	174, 262, 502, 600, 697
ApeKI	GCWGC	4 cut(s)	194, 291, 309, 373
ApoI	RAATTY	1 cut(s)	362
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	4 cut(s)	175, 600, 698, 795
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	795
BalI	TGGCCA	1 cut(s)	504
BanII	GRGCYC	2 cut(s)	525, 561
BauI	CACGAG	1 cut(s)	766
Bbv12I	GWGCWC	2 cut(s)	525, 561
BbvI	GCAGC	4 cut(s)	206, 296, 303, 385
BccI	CCATC	2 cut(s)	23, 664
BceAI	ACGGC	1 cut(s)	587
BciT130I	CCWGG	2 cut(s)	338, 696
BcoDI	GTCTC	2 cut(s)	291, 765
BfaI	CTAG	1 cut(s)	494
BglI	GCCNNNNNGGC	1 cut(s)	182
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	4 cut(s)	195, 292, 310, 374
BlsI	GCNGC	4 cut(s)	196, 293, 311, 375
Bme1390I	CCNGG	2 cut(s)	338, 696
Bme18I	GGWCC	1 cut(s)	795
BmgBI	CACGTC	1 cut(s)	301
BmgT120I	GGNCC	4 cut(s)	175, 600, 698, 795
BmiI	GGNNCC	1 cut(s)	482
BmrFI	CCNGG	2 cut(s)	338, 696
BmrI	ACTGGG	3 cut(s)	108, 479, 546
BmsI	GCATC	1 cut(s)	141
BmuI	ACTGGG	3 cut(s)	108, 479, 546
BpuEI	CTTGAG	2 cut(s)	389, 509
BsaI	GGTCTC	1 cut(s)	765
BsaJI	CCNNGG	2 cut(s)	440, 694
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 707, 781
Bse1I	ACTGG	5 cut(s)	103, 485, 552, 688, 728
Bse3DI	GCAATG	2 cut(s)	87, 267
BseBI	CCWGG	2 cut(s)	338, 696
BseDI	CCNNGG	2 cut(s)	440, 694
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	3 cut(s)	301, 707, 781
BseMI	GCAATG	2 cut(s)	87, 267
BseMII	CTCAG	3 cut(s)	318, 371, 467
BseNI	ACTGG	5 cut(s)	103, 485, 552, 688, 728
BseXI	GCAGC	4 cut(s)	206, 296, 303, 385
BseYI	CCCAGC	1 cut(s)	177
BsgI	GTGCAG	3 cut(s)	68, 213, 237
BshFI	GGCC	5 cut(s)	176, 264, 504, 602, 699
BsiHKAI	GWGCWC	2 cut(s)	525, 561
BslFI	GGGAC	3 cut(s)	438, 590, 677
BslI	CCNNNNNNNGG	3 cut(s)	301, 707, 781
BsmAI	GTCTC	2 cut(s)	291, 765
BsmBI	CGTCTC	1 cut(s)	291
BsmFI	GGGAC	3 cut(s)	438, 590, 677
BsnI	GGCC	5 cut(s)	176, 264, 504, 602, 699
Bso31I	GGTCTC	1 cut(s)	765
Bsp1286I	GDGCHC	2 cut(s)	525, 561
Bsp1407I	TGTACA	2 cut(s)	12, 635
Bsp143I	GATC	3 cut(s)	143, 544, 580
BspACI	CCGC	3 cut(s)	40, 92, 422
BspANI	GGCC	5 cut(s)	176, 264, 504, 602, 699
BspCNI	CTCAG	3 cut(s)	319, 372, 466
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	482
BspPI	GGATC	2 cut(s)	552, 575
BspQI	GCTCTTC	1 cut(s)	566
BspTNI	GGTCTC	1 cut(s)	765
BsrBI	CCGCTC	1 cut(s)	422
BsrDI	GCAATG	2 cut(s)	87, 267
BsrGI	TGTACA	2 cut(s)	12, 635
BsrI	ACTGG	5 cut(s)	103, 485, 552, 688, 728
BssECI	CCNNGG	2 cut(s)	440, 694
BssMI	GATC	3 cut(s)	143, 544, 580
BssSI	CACGAG	1 cut(s)	766
BssT1I	CCWWGG	1 cut(s)	440
Bst2BI	CACGAG	1 cut(s)	766
Bst2UI	CCWGG	2 cut(s)	338, 696
Bst4CI	ACNGT	3 cut(s)	115, 568, 635
Bst6I	CTCTTC	2 cut(s)	566, 729
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstAUI	TGTACA	2 cut(s)	12, 635
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	4 cut(s)	327, 380, 453, 750
BstF5I	GGATG	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	146, 547, 583
BstMAI	GTCTC	2 cut(s)	291, 765
BstMBI	GATC	3 cut(s)	143, 544, 580
BstMWI	GCNNNNNNNGC	8 cut(s)	82, 182, 191, 215, 278, 419, 608, 653
BstNI	CCWGG	2 cut(s)	338, 696
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	336, 694
BstV1I	GCAGC	4 cut(s)	206, 296, 303, 385
BstX2I	RGATCY	2 cut(s)	143, 580
BstYI	RGATCY	2 cut(s)	143, 580
BsuRI	GGCC	5 cut(s)	176, 264, 504, 602, 699
BtrI	CACGTC	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	475
BtsI	GCAGTG	2 cut(s)	225, 405
BtsIMutI	CAGTG	6 cut(s)	196, 225, 405, 492, 559, 681
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	2 cut(s)	326, 379
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	4 cut(s)	175, 600, 698, 795
Csp6I	GTAC	5 cut(s)	13, 258, 574, 631, 636
CspCI	CAANNNNNGTGG	2 cut(s)	767, 802
CviAII	CATG	6 cut(s)	62, 200, 278, 395, 592, 662
CviQI	GTAC	5 cut(s)	13, 258, 574, 631, 636
DdeI	CTNAG	4 cut(s)	327, 380, 453, 750
DpnI	GATC	3 cut(s)	145, 546, 582
DpnII	GATC	3 cut(s)	143, 544, 580
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	566, 729
EarI	CTCTTC	2 cut(s)	566, 729
Ecl136II	GAGCTC	2 cut(s)	523, 559
Eco130I	CCWWGG	1 cut(s)	440
Eco24I	GRGCYC	2 cut(s)	525, 561
Eco31I	GGTCTC	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	795
Eco53kI	GAGCTC	2 cut(s)	523, 559
Eco57I	CTGAAG	1 cut(s)	435
EcoICRI	GAGCTC	2 cut(s)	523, 559
EcoRII	CCWGG	2 cut(s)	336, 694
EcoT14I	CCWWGG	1 cut(s)	440
EcoT38I	GRGCYC	2 cut(s)	525, 561
ErhI	CCWWGG	1 cut(s)	440
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	6 cut(s)	65, 203, 281, 398, 595, 665
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FaqI	GGGAC	3 cut(s)	438, 590, 677
FatI	CATG	6 cut(s)	61, 199, 277, 394, 591, 661
FauI	CCCGC	2 cut(s)	33, 415
Fnu4HI	GCNGC	4 cut(s)	195, 292, 310, 374
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	2 cut(s)	525, 561
Fsp4HI	GCNGC	4 cut(s)	195, 292, 310, 374
FspBI	CTAG	1 cut(s)	494
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	195, 292, 310, 374
GsaI	CCCAGC	1 cut(s)	181
HaeIII	GGCC	5 cut(s)	176, 264, 504, 602, 699
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	6 cut(s)	65, 203, 281, 398, 595, 665
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	2 cut(s)	118, 763
HindII	GTYRAC	2 cut(s)	118, 763
HinfI	GANTC	4 cut(s)	103, 153, 473, 687
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	5 cut(s)	13, 118, 304, 638, 763
Hpy188I	TCNGA	3 cut(s)	152, 456, 520
Hpy188III	TCNNGA	4 cut(s)	62, 157, 368, 526
Hpy8I	GTNNAC	5 cut(s)	13, 118, 304, 638, 763
HpyAV	CCTTC	2 cut(s)	335, 410
HpyCH4III	ACNGT	3 cut(s)	115, 568, 635
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	6 cut(s)	85, 194, 218, 281, 398, 611
HpyF10VI	GCNNNNNNNGC	8 cut(s)	82, 182, 191, 215, 278, 419, 608, 653
HpyF3I	CTNAG	4 cut(s)	327, 380, 453, 750
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	6 cut(s)	65, 203, 281, 398, 595, 665
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	143, 544, 580
LguI	GCTCTTC	1 cut(s)	566
LmnI	GCTCC	3 cut(s)	419, 520, 537
Lsp1109I	GCAGC	4 cut(s)	206, 296, 303, 385
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	3 cut(s)	94, 677, 799
MalI	GATC	3 cut(s)	145, 546, 582
MbiI	CCGCTC	1 cut(s)	422
MboI	GATC	3 cut(s)	143, 544, 580
MboII	GAAGA	2 cut(s)	553, 746
MflI	RGATCY	2 cut(s)	143, 580
MhlI	GDGCHC	2 cut(s)	525, 561
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	3 cut(s)	362, 435, 529
MluNI	TGGCCA	1 cut(s)	504
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	8 cut(s)	199, 344, 375, 442, 459, 730, 751, 816
Mox20I	TGGCCA	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	552
Msp20I	TGGCCA	1 cut(s)	504
MspR9I	CCNGG	2 cut(s)	338, 696
MvaI	CCWGG	2 cut(s)	338, 696
MwoI	GCNNNNNNNGC	8 cut(s)	82, 182, 191, 215, 278, 419, 608, 653
NdeII	GATC	3 cut(s)	143, 544, 580
NlaIII	CATG	6 cut(s)	65, 203, 281, 398, 595, 665
NlaIV	GGNNCC	1 cut(s)	482
NmeAIII	GCCGAG	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	799
NspI	RCATGY	1 cut(s)	398
OliI	CACNNNNGTG	1 cut(s)	552
PagI	TCATGA	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	566
PfeI	GAWTC	4 cut(s)	103, 153, 473, 687
PkrI	GCNGC	4 cut(s)	196, 293, 311, 375
Psp124BI	GAGCTC	2 cut(s)	525, 561
Psp6I	CCWGG	2 cut(s)	336, 694
PspFI	CCCAGC	1 cut(s)	177
PspGI	CCWGG	2 cut(s)	336, 694
PspN4I	GGNNCC	1 cut(s)	482
PspPI	GGNCC	4 cut(s)	175, 600, 698, 795
PstNI	CAGNNNCTG	2 cut(s)	326, 379
PsuI	RGATCY	2 cut(s)	143, 580
RsaI	GTAC	5 cut(s)	14, 259, 575, 632, 637
RsaNI	GTAC	5 cut(s)	13, 258, 574, 631, 636
RseI	CAYNNNNRTG	1 cut(s)	552
SacI	GAGCTC	2 cut(s)	525, 561
SapI	GCTCTTC	1 cut(s)	566
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	4 cut(s)	195, 292, 310, 374
Sau3AI	GATC	3 cut(s)	143, 544, 580
Sau96I	GGNCC	4 cut(s)	175, 600, 698, 795
ScrFI	CCNGG	2 cut(s)	338, 696
SduI	GDGCHC	2 cut(s)	525, 561
SfaNI	GCATC	1 cut(s)	141
SinI	GGWCC	1 cut(s)	795
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	2 cut(s)	368, 524
SmoI	CTYRAG	2 cut(s)	368, 524
Sse9I	AATT	3 cut(s)	362, 435, 529
SsiI	CCGC	3 cut(s)	40, 92, 422
SspMI	CTAG	1 cut(s)	494
SstI	GAGCTC	2 cut(s)	525, 561
StyD4I	CCNGG	2 cut(s)	336, 694
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	3 cut(s)	115, 568, 635
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	253
TasI	AATT	3 cut(s)	362, 435, 529
TatI	WGTACW	5 cut(s)	12, 257, 573, 630, 635
TfiI	GAWTC	4 cut(s)	103, 153, 473, 687
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	6 cut(s)	196, 225, 405, 492, 559, 688
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	4 cut(s)	194, 291, 309, 373
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	3 cut(s)	50, 486, 650
TspGWI	ACGGA	2 cut(s)	635, 787
TspRI	CASTG	6 cut(s)	196, 225, 405, 492, 559, 688
VpaK11BI	GGWCC	1 cut(s)	795
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	1 cut(s)	398
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.