Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042516.1

Orthogroup ID

OG0012086

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1523

Gene Structure 1523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042516.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ggctctgtaacctctggggttgtattggaagactttgatactgtcttcaccaacaagttctaccagagtcaccttgatgatctatcaaatataaactcttcagctattgtggcagctgcttcccttgtagcacgcaccctttacattcttgccagtggcaataacaatacaagcagttcggctttaacgtctatcaatgtgaatgtttcactggtcaaagaactaatgggttgcctattggactgtgagccaggtctttcttgtgagctggttaaaaattatataacaccagcgaatacctgccccagcaattatgttggcgttatcgttgatgaaccttcatccaccccgtatgttggatatgttagtgatatttcaaggtttgtttggaacttcctggctgaaaaaacttctatttcaaaggaaaatgctacctctgtctgttctaaagattgcagcaatgatggtggagtctgcattagagcggagacagatggaaagggagtttgtgttgtctccacaaccagatacgttccagcttactcaacaaggttgaaatttgaatctggatcctggactgtattgcctccaaataactctgatcccatggggctgttggatgccgtttggacagaaagtaactggaatacaattgggctccgagtctatactgtccaaaattcttctttcgataatattgttttacttgggagcatcgccattacagtcttggcttacctcgcaatagtgatcacaagggcctttttaacaaaggctttaaagcgtgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0010467 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0031224 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0051604 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04330 ko05010 map04330 map05010

Pfam Domains

Protein Families

Nicastrin

Protein Analysis

263

Amino Acids

28.28

Weight (kDa)

4.85

Isoelectric Point (pI)

27.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52640 AT3G52640 AT3G52640
fragaria_vesca	FvH4_1g30060
malus_domestica	MD17G1267200.v1.1
prunus_persica	Prupe.3G165300_v2.0.a1 Prupe.3G165300_v2.0.a1
pyrus_communis	pycom17g26630
rosa_chinensis	RchiOBHm_Chr3g0492061
rosa_laevigata	RLG00000022797
rosa_multiflora	Rmu_sc0003846.1_g000020 Rmu_sc0042516.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392600
rosa_rugosa	Rorug03G0251500
rosa_samantha	Rh3AG301700 Rh3BG337500 Rh3CG335000 Rh3DG337100
rosa_wichuraiana	Rw3G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	308
AccBSI	CCGCTC	1 cut(s)	485
AciI	CCGC	1 cut(s)	485
AclWI	GGATC	3 cut(s)	564, 577, 596
AcsI	RAATTY	2 cut(s)	557, 679
AcuI	CTGAAG	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	4 cut(s)	378, 420, 556, 563
AjnI	CCWGG	3 cut(s)	250, 396, 572
AluBI	AGCT	4 cut(s)	104, 116, 268, 539
AluI	AGCT	4 cut(s)	104, 116, 268, 539
Alw26I	GTCTC	2 cut(s)	482, 520
AlwI	GGATC	3 cut(s)	564, 577, 596
AoxI	GGCC	1 cut(s)	759
ApeKI	GCWGC	3 cut(s)	113, 116, 456
ApoI	RAATTY	2 cut(s)	557, 679
AspS9I	GGNCC	1 cut(s)	759
AsuHPI	GGTGA	2 cut(s)	40, 62
BamHI	GGATCC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	660
BbsI	GAAGAC	2 cut(s)	36, 37
BbvI	GCAGC	3 cut(s)	103, 125, 468
BccI	CCATC	2 cut(s)	458, 488
BceAI	ACGGC	1 cut(s)	608
BciT130I	CCWGG	3 cut(s)	252, 398, 574
BclI	TGATCA	1 cut(s)	750
BcoDI	GTCTC	2 cut(s)	482, 520
BfuAI	ACCTGC	1 cut(s)	308
BisI	GCNGC	3 cut(s)	114, 117, 457
BlsI	GCNGC	3 cut(s)	115, 118, 458
Bme1390I	CCNGG	3 cut(s)	252, 398, 574
BmgT120I	GGNCC	1 cut(s)	759
BmiI	GGNNCC	2 cut(s)	571, 659
BmrFI	CCNGG	3 cut(s)	252, 398, 574
BmsI	GCATC	2 cut(s)	610, 723
BpiI	GAAGAC	2 cut(s)	36, 37
BsaJI	CCNNGG	1 cut(s)	606
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	3 cut(s)	153, 216, 647
Bse3DI	GCAATG	1 cut(s)	466
BseBI	CCWGG	3 cut(s)	252, 398, 574
BseDI	CCNNGG	1 cut(s)	606
BseGI	GGATG	2 cut(s)	341, 625
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	1 cut(s)	466
BseNI	ACTGG	3 cut(s)	153, 216, 647
BseXI	GCAGC	3 cut(s)	103, 125, 468
BseYI	CCCAGC	1 cut(s)	305
BshFI	GGCC	1 cut(s)	761
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	2 cut(s)	482, 520
BsnI	GGCC	1 cut(s)	761
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp143I	GATC	4 cut(s)	79, 569, 601, 750
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	1 cut(s)	485
BspANI	GGCC	1 cut(s)	761
BspLI	GGNNCC	2 cut(s)	571, 659
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	3 cut(s)	564, 577, 596
BsrBI	CCGCTC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	466
BsrI	ACTGG	3 cut(s)	153, 216, 647
BssECI	CCNNGG	1 cut(s)	606
BssMI	GATC	4 cut(s)	79, 569, 601, 750
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	3 cut(s)	252, 398, 574
Bst4CI	ACNGT	5 cut(s)	43, 245, 580, 673, 727
Bst6I	CTCTTC	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	133
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	341, 625
BstKTI	GATC	4 cut(s)	82, 572, 604, 753
BstMAI	GTCTC	2 cut(s)	482, 520
BstMBI	GATC	4 cut(s)	79, 569, 601, 750
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 740
BstNI	CCWGG	3 cut(s)	252, 398, 574
BstSCI	CCNGG	3 cut(s)	250, 396, 572
BstV1I	GCAGC	3 cut(s)	103, 125, 468
BstV2I	GAAGAC	2 cut(s)	36, 37
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
BsuRI	GGCC	1 cut(s)	761
BtgI	CCRYGG	1 cut(s)	606
BtgZI	GCGATG	1 cut(s)	700
BtsCI	GGATG	2 cut(s)	341, 625
BtsIMutI	CAGTG	2 cut(s)	160, 209
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	759
CspCI	CAANNNNNGTGG	2 cut(s)	448, 483
CviAII	CATG	1 cut(s)	607
DpnI	GATC	4 cut(s)	81, 571, 603, 752
DpnII	GATC	4 cut(s)	79, 569, 601, 750
DraI	TTTAAA	1 cut(s)	780
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	606
Eco24I	GRGCYC	1 cut(s)	660
Eco57I	CTGAAG	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	759
EcoRII	CCWGG	3 cut(s)	250, 396, 572
EcoT14I	CCWWGG	1 cut(s)	606
EcoT38I	GRGCYC	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	1 cut(s)	610
FaiI	YATR	8 cut(s)	92, 282, 284, 315, 354, 363, 608, 669
FatI	CATG	1 cut(s)	606
FbaI	TGATCA	1 cut(s)	750
Fnu4HI	GCNGC	3 cut(s)	114, 117, 457
FokI	GGATG	2 cut(s)	328, 632
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	3 cut(s)	114, 117, 457
GluI	GCNGC	3 cut(s)	114, 117, 457
GsaI	CCCAGC	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	761
Hin1II	CATG	1 cut(s)	610
HinfI	GANTC	4 cut(s)	67, 471, 563, 663
HphI	GGTGA	2 cut(s)	40, 62
Hpy188I	TCNGA	2 cut(s)	601, 662
Hpy188III	TCNNGA	1 cut(s)	567
HpyAV	CCTTC	1 cut(s)	348
HpyCH4III	ACNGT	5 cut(s)	43, 245, 580, 673, 727
HpyCH4IV	ACGT	2 cut(s)	188, 531
HpyCH4V	TGCA	2 cut(s)	456, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 740
HpySE526I	ACGT	2 cut(s)	188, 531
Hsp92II	CATG	1 cut(s)	610
Ksp22I	TGATCA	1 cut(s)	750
Kzo9I	GATC	4 cut(s)	79, 569, 601, 750
LmnI	GCTCC	2 cut(s)	663, 711
Lsp1109I	GCAGC	3 cut(s)	103, 125, 468
LweI	GCATC	2 cut(s)	610, 723
MaeII	ACGT	2 cut(s)	188, 531
MaeIII	GTNAC	4 cut(s)	7, 68, 638, 785
MalI	GATC	4 cut(s)	81, 571, 603, 752
MbiI	CCGCTC	1 cut(s)	485
MboI	GATC	4 cut(s)	79, 569, 601, 750
MboII	GAAGA	4 cut(s)	37, 41, 90, 675
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	1 cut(s)	569
MhlI	GDGCHC	1 cut(s)	660
MluCI	AATT	5 cut(s)	277, 310, 557, 651, 679
MlyI	GAGTC	3 cut(s)	76, 480, 672
MmeI	TCCRAC	2 cut(s)	337, 597
MnlI	CCTC	4 cut(s)	22, 445, 597, 749
MseI	TTAA	4 cut(s)	185, 273, 767, 779
MslI	CAYNNNNRTG	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	116
MspR9I	CCNGG	3 cut(s)	252, 398, 574
MunI	CAATTG	1 cut(s)	651
MvaI	CCWGG	3 cut(s)	252, 398, 574
MwoI	GCNNNNNNNGC	2 cut(s)	110, 740
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	4 cut(s)	79, 569, 601, 750
NlaIII	CATG	1 cut(s)	610
NlaIV	GGNNCC	2 cut(s)	571, 659
NmuCI	GTSAC	2 cut(s)	68, 785
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	563
PfoI	TCCNGGA	1 cut(s)	572
PkrI	GCNGC	3 cut(s)	115, 118, 458
PleI	GAGTC	3 cut(s)	75, 479, 671
PpsI	GAGTC	3 cut(s)	75, 479, 671
Psp6I	CCWGG	3 cut(s)	250, 396, 572
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	3 cut(s)	250, 396, 572
PspN4I	GGNNCC	2 cut(s)	571, 659
PspPI	GGNCC	1 cut(s)	759
PsuI	RGATCY	1 cut(s)	569
PvuII	CAGCTG	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	75
SaqAI	TTAA	4 cut(s)	185, 273, 767, 779
SatI	GCNGC	3 cut(s)	114, 117, 457
Sau3AI	GATC	4 cut(s)	79, 569, 601, 750
Sau96I	GGNCC	1 cut(s)	759
SchI	GAGTC	3 cut(s)	76, 480, 672
ScrFI	CCNGG	3 cut(s)	252, 398, 574
SduI	GDGCHC	1 cut(s)	660
SfaNI	GCATC	2 cut(s)	610, 723
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	5 cut(s)	277, 310, 557, 651, 679
SsiI	CCGC	1 cut(s)	485
SspI	AATATT	1 cut(s)	697
StyD4I	CCNGG	3 cut(s)	250, 396, 572
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	5 cut(s)	43, 245, 580, 673, 727
TaiI	ACGT	2 cut(s)	191, 534
TaqI	TCGA	1 cut(s)	690
TasI	AATT	5 cut(s)	277, 310, 557, 651, 679
TfiI	GAWTC	1 cut(s)	563
Tru1I	TTAA	4 cut(s)	185, 273, 767, 779
Tru9I	TTAA	4 cut(s)	185, 273, 767, 779
TscAI	CASTG	2 cut(s)	160, 216
TseFI	GTSAC	2 cut(s)	68, 785
TseI	GCWGC	3 cut(s)	113, 116, 456
Tsp45I	GTSAC	2 cut(s)	68, 785
TspDTI	ATGAA	2 cut(s)	330, 348
TspRI	CASTG	2 cut(s)	160, 216
XapI	RAATTY	2 cut(s)	557, 679
XcmI	CCANNNNNNNNNTGG	2 cut(s)	613, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.