Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012086

Physical Location & Seq

Genomic Coordinates Reverse (-)

23720048 .. 23720791

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0251500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGACATGAAGAAGATTACCGTCGCCAGCATTGTTGTTGTTGCCTTCGTAAGTCTTGTCATGGCTGCTAAGGATATGCCCAAGGACGCACATGCCCCCAAGAGCGCCCATGCCCCCAATGCTGCTCATGCTCCCAAGGGCTCAACTTTCGTCCCAGCTTCGGCCCCTAGGGACTCGTCTCATACCCCTGCCCCGGCCCCTTCAAGTGCCACATCCACTAGCAGGTCCATTATAGAGTCTTTTGCTGGTGCAGCCCTTATGTCTTTCTTTGCCTATTATGTGCAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0010467 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0031224 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0051604 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04330 ko05010 map04330 map05010

Pfam Domains

Protein Families

Nicastrin

Protein Analysis

96

Amino Acids

9.92

Weight (kDa)

9.52

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52640 AT3G52640 AT3G52640
fragaria_vesca	FvH4_1g30060
malus_domestica	MD17G1267200.v1.1
prunus_persica	Prupe.3G165300_v2.0.a1 Prupe.3G165300_v2.0.a1
pyrus_communis	pycom17g26630
rosa_chinensis	RchiOBHm_Chr3g0492061
rosa_laevigata	RLG00000022797
rosa_multiflora	Rmu_sc0003846.1_g000020 Rmu_sc0042516.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392600
rosa_rugosa	Rorug03G0251500
rosa_samantha	Rh3AG301700 Rh3BG337500 Rh3CG335000 Rh3DG337100
rosa_wichuraiana	Rw3G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	213
AfiI	CCNNNNNNNGG	3 cut(s)	160, 193, 222
AgsI	TTSAA	1 cut(s)	204
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw26I	GTCTC	1 cut(s)	183
AoxI	GGCC	2 cut(s)	162, 195
ApeKI	GCWGC	3 cut(s)	65, 122, 251
AspA2I	CCTAGG	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	3 cut(s)	163, 196, 225
AsuC2I	CCSGG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	225
AvrII	CCTAGG	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	52, 109, 263
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	2 cut(s)	168, 219
BfoI	RGCGCY	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	213
BisI	GCNGC	3 cut(s)	66, 123, 252
BlnI	CCTAGG	1 cut(s)	167
BlsI	GCNGC	3 cut(s)	67, 124, 253
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	3 cut(s)	163, 196, 225
BmiI	GGNNCC	2 cut(s)	165, 198
BmrFI	CCNGG	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	194
BsaJI	CCNNGG	4 cut(s)	81, 135, 167, 192
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 193, 222
BseDI	CCNNGG	4 cut(s)	81, 135, 167, 192
BseGI	GGATG	1 cut(s)	212
BseLI	CCNNNNNNNGG	3 cut(s)	160, 193, 222
BseXI	GCAGC	3 cut(s)	52, 109, 263
BseYI	CCCAGC	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	2 cut(s)	164, 197
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	2 cut(s)	137, 185
BslI	CCNNNNNNNGG	3 cut(s)	160, 193, 222
BsmAI	GTCTC	1 cut(s)	183
BsmBI	CGTCTC	1 cut(s)	183
BsmFI	GGGAC	2 cut(s)	137, 185
BsnI	GGCC	2 cut(s)	164, 197
Bsp1286I	GDGCHC	1 cut(s)	143
BspANI	GGCC	2 cut(s)	164, 197
BspLI	GGNNCC	2 cut(s)	165, 198
BspMI	ACCTGC	1 cut(s)	213
BssECI	CCNNGG	4 cut(s)	81, 135, 167, 192
BssT1I	CCWWGG	3 cut(s)	81, 135, 167
Bst4CI	ACNGT	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	212
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 128, 251
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	192
BstV1I	GCAGC	3 cut(s)	52, 109, 263
BsuRI	GGCC	2 cut(s)	164, 197
BtsCI	GGATG	1 cut(s)	212
BveI	ACCTGC	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	3 cut(s)	163, 196, 225
CseI	GACGC	1 cut(s)	95
CviAII	CATG	5 cut(s)	7, 61, 92, 110, 128
CviJI	RGCY	6 cut(s)	65, 141, 158, 164, 197, 254
CviKI_1	RGCY	6 cut(s)	65, 141, 158, 164, 197, 254
DdeI	CTNAG	1 cut(s)	69
Eco130I	CCWWGG	3 cut(s)	81, 135, 167
Eco24I	GRGCYC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	225
EcoT14I	CCWWGG	3 cut(s)	81, 135, 167
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	3 cut(s)	81, 135, 167
Esp3I	CGTCTC	1 cut(s)	183
FaeI	CATG	5 cut(s)	10, 64, 95, 113, 131
FaqI	GGGAC	2 cut(s)	137, 185
FatI	CATG	5 cut(s)	6, 60, 91, 109, 127
Fnu4HI	GCNGC	3 cut(s)	66, 123, 252
FokI	GGATG	1 cut(s)	199
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	3 cut(s)	66, 123, 252
FspBI	CTAG	2 cut(s)	168, 219
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	3 cut(s)	66, 123, 252
GsaI	CCCAGC	1 cut(s)	158
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	164, 197
HapII	CCGG	1 cut(s)	194
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	5 cut(s)	10, 64, 95, 113, 131
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HinfI	GANTC	2 cut(s)	173, 236
HpaII	CCGG	1 cut(s)	194
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	55, 210
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	2 cut(s)	251, 283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 128, 251
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	5 cut(s)	10, 64, 95, 113, 131
HspAI	GCGC	1 cut(s)	105
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	6 cut(s)	40, 168, 201, 207, 208, 231
Lsp1109I	GCAGC	3 cut(s)	52, 109, 263
MaeI	CTAG	2 cut(s)	168, 219
MboII	GAAGA	2 cut(s)	22, 25
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	1 cut(s)	286
MlyI	GAGTC	2 cut(s)	167, 245
MseI	TTAA	1 cut(s)	289
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	119, 128, 251
NciI	CCSGG	1 cut(s)	194
NlaIII	CATG	5 cut(s)	10, 64, 95, 113, 131
NlaIV	GGNNCC	2 cut(s)	165, 198
NspI	RCATGY	1 cut(s)	95
PkrI	GCNGC	3 cut(s)	67, 124, 253
PleI	GAGTC	2 cut(s)	167, 244
PpsI	GAGTC	2 cut(s)	167, 244
PspFI	CCCAGC	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	165, 198
PspPI	GGNCC	3 cut(s)	163, 196, 225
SaqAI	TTAA	1 cut(s)	289
SatI	GCNGC	3 cut(s)	66, 123, 252
Sau96I	GGNCC	3 cut(s)	163, 196, 225
SchI	GAGTC	2 cut(s)	167, 245
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	2 cut(s)	160, 227
SinI	GGWCC	1 cut(s)	225
Sse9I	AATT	1 cut(s)	286
SspMI	CTAG	2 cut(s)	168, 219
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	3 cut(s)	81, 135, 167
TaaI	ACNGT	1 cut(s)	22
TasI	AATT	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	289
Tru9I	TTAA	1 cut(s)	289
TseI	GCWGC	3 cut(s)	65, 122, 251
TspDTI	ATGAA	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	225
XceI	RCATGY	1 cut(s)	95
XmaJI	CCTAGG	1 cut(s)	167
XspI	CTAG	2 cut(s)	168, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.