Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043109.1

Orthogroup ID

OG0011589

Physical Location & Seq

Genomic Coordinates Reverse (-)

855 .. 1577

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043109.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgcaagggttggtggttgttcagaatgcttgcctgccttgtctaccttcaactagccccttgtcagtggataacaaactgagttttaggaagagattggggccttctaggctttcgtttaagtggagggaagggcatgctgctccggctgatcccacattagtttcgcccagggcggttgttaaaagaccaatagcaggttcgacaattccacactgcccgatgggcaagagaatgccagattgttggtcacctcttgagccaaacactttcaaagtccgggggaggaattatcttagggacaaaaagaaagagttagctccagattgcgccgcgtattatccttttggggttgatatttttttatctcagaggaagattgatcatattgctcgctttgtggaacttcctgttgtgaatgtagatggagatgtcccttctattcttgttgtaaatgttcaggtgcctactccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336

Protein Analysis

158

Amino Acids

17.51

Weight (kDa)

9.63

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49660 FvH4_6g49660 FvH4_6g49660 FvH4_6g49660
malus_domestica	MD09G1042800.v1.1 MD17G1044300.v1.1
prunus_persica	Prupe.3G275000_v2.0.a1 Prupe.3G275000_v2.0.a1
pyrus_communis	pycom111g03340
rosa_chinensis	RchiOBHm_Chr2g0169681
rosa_laevigata	RLG00000021894
rosa_multiflora	Rmu_sc0013280.1_g000002 Rmu_sc0043109.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081890
rosa_rugosa	Rorug02G0542100
rosa_samantha	Rh2AG614400 Rh2BG626700 Rh2CG596100 Rh2DG637500
rosa_wichuraiana	Rw2G050930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	188
AccB1I	GGYRCC	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	43
AccII	CGCG	1 cut(s)	335
AciI	CCGC	2 cut(s)	176, 333
AclWI	GGATC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	51, 274
AjnI	CCWGG	1 cut(s)	170
AjuI	GAANNNNNNNTTGG	2 cut(s)	184, 216
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	463
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	2 cut(s)	217, 419
BciT130I	CCWGG	1 cut(s)	172
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	281
BfaI	CTAG	2 cut(s)	54, 108
BfuAI	ACCTGC	1 cut(s)	188
BglI	GCCNNNNNGGC	2 cut(s)	109, 225
BisI	GCNGC	2 cut(s)	141, 333
BlsI	GCNGC	2 cut(s)	142, 334
Bme1390I	CCNGG	2 cut(s)	172, 281
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	102, 465
BmrFI	CCNGG	2 cut(s)	172, 281
BpmI	CTGGAG	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	281
BsaJI	CCNNGG	3 cut(s)	170, 171, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	3 cut(s)	170, 171, 280
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	2 cut(s)	71, 383
BseXI	GCAGC	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	463
BsiSI	CCGG	2 cut(s)	146, 280
BslFI	GGGAC	2 cut(s)	314, 419
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmFI	GGGAC	2 cut(s)	314, 419
BsmI	GAATGC	2 cut(s)	31, 240
BsnI	GGCC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	151, 382
BspACI	CCGC	2 cut(s)	176, 333
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	2 cut(s)	72, 382
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	2 cut(s)	102, 465
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	463
BssECI	CCNNGG	3 cut(s)	170, 171, 280
BssMI	GATC	2 cut(s)	151, 382
Bst2UI	CCWGG	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	4 cut(s)	31, 35, 138, 394
BstDEI	CTNAG	3 cut(s)	80, 296, 369
BstEII	GGTNACC	1 cut(s)	249
BstFNI	CGCG	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	2 cut(s)	154, 385
BstMBI	GATC	2 cut(s)	151, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 146, 225
BstNI	CCWGG	1 cut(s)	172
BstNSI	RCATGY	1 cut(s)	140
BstPI	GGTNACC	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	170, 279
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	1 cut(s)	127
BstXI	CCANNNNNNTGG	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	72, 214
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	4 cut(s)	31, 35, 138, 394
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	101
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	6 cut(s)	57, 103, 112, 149, 262, 320
CviKI_1	RGCY	6 cut(s)	57, 103, 112, 149, 262, 320
DdeI	CTNAG	3 cut(s)	80, 296, 369
DpnI	GATC	2 cut(s)	153, 384
DpnII	GATC	2 cut(s)	151, 382
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco91I	GGTNACC	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	170
FaeI	CATG	1 cut(s)	140
FaiI	YATR	2 cut(s)	138, 387
FaqI	GGGAC	2 cut(s)	314, 419
FatI	CATG	1 cut(s)	136
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	141, 333
Fsp4HI	GCNGC	2 cut(s)	141, 333
FspBI	CTAG	2 cut(s)	54, 108
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	2 cut(s)	141, 333
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	2 cut(s)	146, 280
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	1 cut(s)	140
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HpaII	CCGG	2 cut(s)	146, 280
HphI	GGTGA	1 cut(s)	243
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	2 cut(s)	24, 372
Hpy188III	TCNNGA	2 cut(s)	257, 323
Hpy8I	GTNNAC	1 cut(s)	44
HpyAV	CCTTC	4 cut(s)	57, 114, 125, 447
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 146, 225
HpyF3I	CTNAG	3 cut(s)	80, 296, 369
Hsp92II	CATG	1 cut(s)	140
HspAI	GCGC	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	151, 382
LmnI	GCTCC	2 cut(s)	148, 325
Lsp1109I	GCAGC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	54, 108
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	2 cut(s)	153, 384
MboI	GATC	2 cut(s)	151, 382
MboII	GAAGA	2 cut(s)	103, 388
MluCI	AATT	2 cut(s)	207, 289
MnlI	CCTC	4 cut(s)	120, 264, 279, 366
MseI	TTAA	2 cut(s)	120, 183
MspI	CCGG	2 cut(s)	146, 280
MspR9I	CCNGG	2 cut(s)	172, 281
Mva1269I	GAATGC	2 cut(s)	31, 240
MvaI	CCWGG	1 cut(s)	172
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	3 cut(s)	109, 146, 225
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	2 cut(s)	151, 382
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	2 cut(s)	102, 465
NmuCI	GTSAC	1 cut(s)	249
NspI	RCATGY	1 cut(s)	140
PaeI	GCATGC	1 cut(s)	140
PasI	CCCWGGG	1 cut(s)	171
PctI	GAATGC	2 cut(s)	31, 240
PkrI	GCNGC	2 cut(s)	142, 334
Psp6I	CCWGG	1 cut(s)	170
PspEI	GGTNACC	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	102, 465
PspPI	GGNCC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	120, 183
SatI	GCNGC	2 cut(s)	141, 333
Sau3AI	GATC	2 cut(s)	151, 382
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	172, 281
SetI	ASST	5 cut(s)	49, 202, 256, 322, 465
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SphI	GCATGC	1 cut(s)	140
Sse9I	AATT	2 cut(s)	207, 289
SsiI	CCGC	2 cut(s)	176, 333
SspMI	CTAG	2 cut(s)	54, 108
StyD4I	CCNGG	2 cut(s)	170, 279
TaqI	TCGA	1 cut(s)	203
TasI	AATT	2 cut(s)	207, 289
TauI	GCSGC	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	120, 183
Tru9I	TTAA	2 cut(s)	120, 183
TscAI	CASTG	2 cut(s)	72, 221
TseFI	GTSAC	1 cut(s)	249
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	249
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	2 cut(s)	72, 221
XceI	RCATGY	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	43
XspI	CTAG	2 cut(s)	54, 108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.