Rorug02G0542100

Protein of unknown function (DUF1336)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011589
Physical Location & Seq
Forward (+)
67164109 .. 67164738
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0542100.1

Sequence Viewer

Length: 279 bp
ATGAGTTCTTCATCATCAGCAAGGAGAGCATGGATAGTGGCAGCAAGTGTGGGAGTTGTGGAGGCCTTGAAAGACCAAGGAATCTGCAGGTGGAATTACACAATGAAATTGATGCAGCAGCAAGCCAAGACCCATCTCAGGTCTTATTCTCAGGCTCATTCAAAACTCTCTTCCTCATCCTCTGCTTTGGTTTCAACTAAACTCAGAGATGACAAGGCCAAGCATTCTGAGGAGTCTCTCAGAAAAGTCATGTACCTCAGCTGCTGGGGTCCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336

Protein Analysis

92

Amino Acids

10.28

Weight (kDa)

9.95

Isoelectric Point (pI)

66.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 13 - 91 1.8e-33 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 78
Acc36I ACCTGC 1 cut(s) 78
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 3 cut(s) 70, 162, 195
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 240
AlwNI CAGNNNCTG 1 cut(s) 264
AoxI GGCC 2 cut(s) 63, 216
ApeKI GCWGC 4 cut(s) 41, 115, 118, 261
AspS9I GGNCC 1 cut(s) 269
AvaII GGWCC 1 cut(s) 269
BbvCI CCTCAGC 1 cut(s) 257
BbvI GCAGC 4 cut(s) 53, 127, 130, 248
BccI CCATC 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 78
BisI GCNGC 4 cut(s) 42, 116, 119, 262
BlsI GCNGC 4 cut(s) 43, 117, 120, 263
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 2 cut(s) 270, 271
BmsI GCATC 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMII CTCAG 6 cut(s) 151, 164, 217, 219, 253, 271
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 4 cut(s) 53, 127, 130, 248
BseYI CCCAGC 1 cut(s) 264
BshFI GGCC 2 cut(s) 65, 218
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 2 cut(s) 65, 218
BspANI GGCC 2 cut(s) 65, 218
BspCNI CTCAG 6 cut(s) 150, 163, 216, 220, 252, 270
BspLI GGNNCC 2 cut(s) 270, 271
BspMAI CTGCAG 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 6 cut(s) 137, 150, 203, 228, 239, 257
BstF5I GGATG 1 cut(s) 176
BstMAI GTCTC 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 4 cut(s) 53, 127, 130, 248
BsuRI GGCC 2 cut(s) 65, 218
BtsCI GGATG 1 cut(s) 176
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 123
CaiI CAGNNNCTG 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 30, 250
CviJI RGCY 5 cut(s) 65, 125, 155, 218, 261
CviKI_1 RGCY 5 cut(s) 65, 125, 155, 218, 261
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 6 cut(s) 137, 150, 203, 228, 239, 257
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 2 cut(s) 33, 253
FaiI YATR 2 cut(s) 31, 251
FaqI GGGAC 1 cut(s) 255
FatI CATG 2 cut(s) 29, 249
Fnu4HI GCNGC 4 cut(s) 42, 116, 119, 262
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 4 cut(s) 42, 116, 119, 262
GluI GCNGC 4 cut(s) 42, 116, 119, 262
GsaI CCCAGC 1 cut(s) 268
HaeIII GGCC 2 cut(s) 65, 218
Hin1II CATG 2 cut(s) 33, 253
HinfI GANTC 2 cut(s) 81, 233
Hpy188I TCNGA 3 cut(s) 206, 229, 242
HpyCH4V TGCA 2 cut(s) 87, 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 6 cut(s) 137, 150, 203, 228, 239, 257
Hsp92II CATG 2 cut(s) 33, 253
KflI GGGWCCC 1 cut(s) 269
LpnPI CCDG 4 cut(s) 73, 124, 137, 250
Lsp1109I GCAGC 4 cut(s) 53, 127, 130, 248
LweI GCATC 1 cut(s) 102
MboII GAAGA 1 cut(s) 162
MfeI CAATTG 1 cut(s) 274
MluCI AATT 3 cut(s) 94, 107, 274
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 5 cut(s) 55, 184, 190, 223, 266
MspA1I CMGCKG 1 cut(s) 261
MunI CAATTG 1 cut(s) 274
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 26
NlaIII CATG 2 cut(s) 33, 253
NlaIV GGNNCC 2 cut(s) 270, 271
PaqCI CACCTGC 1 cut(s) 78
PceI AGGCCT 1 cut(s) 65
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 4 cut(s) 43, 117, 120, 263
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PpuMI RGGWCCY 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 270, 271
PspPI GGNCC 1 cut(s) 269
PspPPI RGGWCCY 1 cut(s) 269
PstI CTGCAG 1 cut(s) 89
PstNI CAGNNNCTG 1 cut(s) 264
PvuII CAGCTG 1 cut(s) 261
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SatI GCNGC 4 cut(s) 42, 116, 119, 262
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 1 cut(s) 242
SetI ASST 4 cut(s) 92, 143, 258, 263
SfaNI GCATC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 85
SinI GGWCC 1 cut(s) 269
Sse9I AATT 3 cut(s) 94, 107, 274
SseBI AGGCCT 1 cut(s) 65
StuI AGGCCT 1 cut(s) 65
StyI CCWWGG 1 cut(s) 76
TasI AATT 3 cut(s) 94, 107, 274
TfiI GAWTC 1 cut(s) 81
TseI GCWGC 4 cut(s) 41, 115, 118, 261
TspDTI ATGAA 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.