Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000119.1

Orthogroup ID

OG0007510

Physical Location & Seq

Genomic Coordinates Reverse (-)

10659 .. 12971

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000119.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

atggtgccctcctctcagaacaataacaaaaccctccattcccttcttgcctcaaacctcaccaagctcacaatcccaccttcctcctcttcttctccgcctcaagacttcgactttaacgacgtcttcggccccccaaccgcctccaacgacggcggcgcgtccacttcattctcgccgtcgttactcgtcatccacaaccggtcccactccttcgtcggcccctccccgcgcttcactccctcctccctcctccccttcaccgccgccgaatccgactccgaggaagacgaaaacgacgccgtttccgaaaccgtgaaagatgaggaatcggcggttcggaagttcgggccttgggatttcgagattctcagagtcgtcggcaagggcgcgttcgggaaggtgtttcaggtgaggaagaagagcagtgatggcgatgaagatggtgatgggctttatgccatgaaggtcatgaggaaggagactgttatcaagaagaaccatgtggattacatgaaggctgagagggacattctcaccaaagttgtgcacccttttattgttcagctccgctactcttttcagaccaagtgtaagctgtacttgatcatggatttcatgaatggagggcatttgttctatcatttgtaccggcaggggatattcagtgaggatcaggcgaggttttacactgctgagatagtgtctgctgtttcacatcttcacaaatgcgggattgtgcatcgggaccttaagccggaaaatgttctcatggatgctgatgggcatgtgatgctgaccgattttggactagcaaaggaaattgatgaagatagcagatcgaattcaatgtgtggaaccaccgaatacatggctcctgaaattctgctgtctaaaggccacaacaaagatgcagattggtggagcattggtatacttttgtatgagatgctaagtggtcagccaccatttacgcatgcaaatagaaagaaacttcaggagagaatcatcagagagaaagttaaacttccaccttaccttaccactgaagctcactctttgctcaaaggattgctacaaaaggaaccatcccaaaggttaggcagtggccccagtggaggtgataatatcaaaagtcataaatggtttaaaacaatcaactggaagaagttggaggccagagaactgctcccaaagttcaagccagatgtgactggaaaagaatgcacggccaattttgaccggtgctggacaacaatgcctctagatgactcaccagctcctacaccaacagcgggtgagcattttcagggatatacttacgtggctcctaacacttggctttcatctgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko04012 ko04066 ko04140 ko04150 ko04151 ko04152 ko04211 ko04212 ko04213 ko04350 ko04371 ko04666 ko04714 ko04910 ko04931 ko05165 ko05200 ko05205 ko05210 ko05212 ko05221 ko05224 ko05225 ko05226 ko05231 map01521 map01522 map04012 map04066 map04140 map04150 map04151 map04152 map04211 map04212 map04213 map04350 map04371 map04666 map04714 map04910 map04931 map05165 map05200 map05205 map05210 map05212 map05221 map05224 map05225 map05226 map05231

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

451

Amino Acids

50.57

Weight (kDa)

6.47

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007510)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g16040 FvH4_5g16040
malus_domestica	MD06G1183400.v1.1
prunus_persica	Prupe.5G182100_v2.0.a1 Prupe.5G182100_v2.0.a1 Prupe.5G182100_v2.0.a1
pyrus_communis	pycom06g16240
rosa_chinensis	RchiOBHm_Chr3g0453311 RchiOBHm_Chr7g0180021
rosa_laevigata	RLG00000005301
rosa_multiflora	Rmu_sc0002191.1_g000005 Rmu_ssc0000119.1_g000001 Rmu_ssc0000119.1_g000003 Rmu_ssc0000119.1_g000022
rosa_roxburghii	Rroxscaffold_3G00273200 Rroxscaffold_3G00273230 Rroxscaffold_7G00177750
rosa_rugosa	Rorug06G0429900.1
rosa_samantha	Rh7BG030000 Rh7CG031500 Rh7CG031700 Rh7DG030700
rosa_wichuraiana	Rw7G002440 Rw7G002460 Rw7G002490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	934
AccII	CGCG	3 cut(s)	161, 232, 392
AclWI	GGATC	1 cut(s)	681
AcoI	YGGCCR	1 cut(s)	1230
AcsI	RAATTY	2 cut(s)	844, 882
AcuI	CTGAAG	2 cut(s)	980, 1068
AcyI	GRCGYC	2 cut(s)	123, 300
AfaI	GTAC	2 cut(s)	602, 650
AfiI	CCNNNNNNNGG	3 cut(s)	757, 1118, 1295
AflII	CTTAAG	1 cut(s)	752
AgeI	ACCGGT	2 cut(s)	201, 1242
AgsI	TTSAA	2 cut(s)	849, 1201
AluBI	AGCT	5 cut(s)	67, 568, 598, 1052, 1280
AluI	AGCT	5 cut(s)	67, 568, 598, 1052, 1280
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	1 cut(s)	476
Alw44I	GTGCAC	1 cut(s)	548
AlwI	GGATC	1 cut(s)	681
AoxI	GGCC	7 cut(s)	130, 220, 350, 898, 1108, 1176, 1230
ApaLI	GTGCAC	1 cut(s)	548
ApoI	RAATTY	2 cut(s)	844, 882
AsiGI	ACCGGT	2 cut(s)	201, 1242
Asp700I	GAANNNNTTC	1 cut(s)	765
AspLEI	GCGC	3 cut(s)	161, 234, 392
AspS9I	GGNCC	6 cut(s)	131, 204, 221, 350, 748, 1109
AsuHPI	GGTGA	8 cut(s)	52, 253, 424, 458, 529, 1133, 1266, 1310
AvaII	GGWCC	2 cut(s)	204, 748
BaeGI	GKGCMC	2 cut(s)	9, 552
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	118, 294
Bbv12I	GWGCWC	1 cut(s)	552
BccI	CCATC	5 cut(s)	425, 437, 443, 776, 1096
BceAI	ACGGC	4 cut(s)	163, 169, 287, 1245
BclI	TGATCA	1 cut(s)	606
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	2 cut(s)	812, 1265
BfrI	CTTAAG	1 cut(s)	752
BisI	GCNGC	2 cut(s)	157, 267
BlsI	GCNGC	2 cut(s)	158, 268
Bme18I	GGWCC	2 cut(s)	204, 748
BmgT120I	GGNCC	6 cut(s)	131, 204, 221, 350, 748, 1109
BmrI	ACTGGG	1 cut(s)	1107
BmsI	GCATC	5 cut(s)	751, 766, 783, 901, 939
BmuI	ACTGGG	1 cut(s)	1107
BpiI	GAAGAC	2 cut(s)	118, 294
BplI	GAGNNNNNCTC	2 cut(s)	1173, 1205
BpuEI	CTTGAG	1 cut(s)	87
BsaAI	YACGTR	1 cut(s)	1324
BsaHI	GRCGYC	2 cut(s)	123, 300
BsaJI	CCNNGG	2 cut(s)	282, 353
BsaWI	WCCGGW	2 cut(s)	201, 1242
BsaXI	ACNNNNNCTCC	2 cut(s)	916, 946
Bsc4I	CCNNNNNNNGG	3 cut(s)	757, 1118, 1295
Bse118I	RCCGGY	3 cut(s)	201, 651, 1242
Bse1I	ACTGG	3 cut(s)	1113, 1166, 1219
BseDI	CCNNGG	2 cut(s)	282, 353
BseGI	GGATG	3 cut(s)	192, 781, 1088
BseLI	CCNNNNNNNGG	3 cut(s)	757, 1118, 1295
BseMII	CTCAG	4 cut(s)	29, 385, 513, 687
BseNI	ACTGG	3 cut(s)	1113, 1166, 1219
BseRI	GAGGAG	3 cut(s)	76, 235, 242
BseSI	GKGCMC	2 cut(s)	9, 552
Bsh1236I	CGCG	3 cut(s)	161, 232, 392
BshFI	GGCC	7 cut(s)	132, 222, 352, 900, 1110, 1178, 1232
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	2 cut(s)	201, 1242
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	4 cut(s)	202, 652, 758, 1243
BslFI	GGGAC	3 cut(s)	190, 542, 761
BslI	CCNNNNNNNGG	3 cut(s)	757, 1118, 1295
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	3 cut(s)	190, 542, 761
BsmI	GAATGC	1 cut(s)	1229
BsnI	GGCC	7 cut(s)	132, 222, 352, 900, 1110, 1178, 1232
Bsp1286I	GDGCHC	2 cut(s)	9, 552
Bsp143I	GATC	3 cut(s)	606, 673, 839
BspANI	GGCC	7 cut(s)	132, 222, 352, 900, 1110, 1178, 1232
BspCNI	CTCAG	4 cut(s)	28, 384, 514, 688
BspFNI	CGCG	3 cut(s)	161, 232, 392
BspHI	TCATGA	2 cut(s)	471, 618
BspPI	GGATC	1 cut(s)	681
BspQI	GCTCTTC	1 cut(s)	416
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	752
BsrFI	RCCGGY	3 cut(s)	201, 651, 1242
BsrI	ACTGG	3 cut(s)	1113, 1166, 1219
BssAI	RCCGGY	3 cut(s)	201, 651, 1242
BssECI	CCNNGG	2 cut(s)	282, 353
BssMI	GATC	3 cut(s)	606, 673, 839
BssNAI	GTATAC	1 cut(s)	935
BssNI	GRCGYC	2 cut(s)	123, 300
BssT1I	CCWWGG	1 cut(s)	353
Bst1107I	GTATAC	1 cut(s)	935
Bst4CI	ACNGT	2 cut(s)	316, 487
Bst6I	CTCTTC	2 cut(s)	94, 416
BstACI	GRCGYC	2 cut(s)	123, 300
BstAFI	CTTAAG	1 cut(s)	752
BstAPI	GCANNNNNTGC	1 cut(s)	793
BstBAI	YACGTR	1 cut(s)	1324
BstC8I	GCNNGC	1 cut(s)	978
BstDEI	CTNAG	5 cut(s)	15, 371, 522, 696, 953
BstF5I	GGATG	3 cut(s)	192, 781, 1088
BstFNI	CGCG	3 cut(s)	161, 232, 392
BstHHI	GCGC	3 cut(s)	161, 234, 392
BstKTI	GATC	3 cut(s)	609, 676, 842
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	3 cut(s)	606, 673, 839
BstMWI	GCNNNNNNNGC	2 cut(s)	432, 793
BstNSI	RCATGY	2 cut(s)	791, 980
BstSLI	GKGCMC	2 cut(s)	9, 552
BstUI	CGCG	3 cut(s)	161, 232, 392
BstV2I	GAAGAC	2 cut(s)	118, 294
BstZ17I	GTATAC	1 cut(s)	935
BsuRI	GGCC	7 cut(s)	132, 222, 352, 900, 1110, 1178, 1232
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	3 cut(s)	192, 781, 1088
BtsI	GCAGTG	3 cut(s)	433, 690, 1111
BtsIMutI	CAGTG	6 cut(s)	433, 673, 690, 1044, 1111, 1120
Cac8I	GCNNGC	1 cut(s)	978
CciI	TCATGA	2 cut(s)	471, 618
CfoI	GCGC	3 cut(s)	161, 234, 392
Cfr10I	RCCGGY	3 cut(s)	201, 651, 1242
Cfr13I	GGNCC	6 cut(s)	131, 204, 221, 350, 748, 1109
CseI	GACGC	2 cut(s)	150, 308
Csp6I	GTAC	2 cut(s)	601, 649
CspAI	ACCGGT	2 cut(s)	201, 1242
CviQI	GTAC	2 cut(s)	601, 649
DdeI	CTNAG	5 cut(s)	15, 371, 522, 696, 953
DpnI	GATC	3 cut(s)	608, 675, 841
DpnII	GATC	3 cut(s)	606, 673, 839
DraI	TTTAAA	1 cut(s)	1150
EaeI	YGGCCR	1 cut(s)	1230
Eam1104I	CTCTTC	2 cut(s)	94, 416
EarI	CTCTTC	2 cut(s)	94, 416
EciI	GGCGGA	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	353
Eco47I	GGWCC	2 cut(s)	204, 748
Eco57I	CTGAAG	2 cut(s)	980, 1068
EcoO109I	RGGNCCY	1 cut(s)	748
EcoRI	GAATTC	1 cut(s)	844
EcoT14I	CCWWGG	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	353
FalI	AAGNNNNNCTT	4 cut(s)	587, 619, 1011, 1043
FaqI	GGGAC	3 cut(s)	190, 542, 761
FauI	CCCGC	3 cut(s)	237, 725, 1288
FbaI	TGATCA	1 cut(s)	606
FblI	GTMKAC	1 cut(s)	934
Fnu4HI	GCNGC	2 cut(s)	157, 267
FokI	GGATG	3 cut(s)	179, 788, 1075
Fsp4HI	GCNGC	2 cut(s)	157, 267
FspBI	CTAG	2 cut(s)	812, 1265
GlaI	GCGC	3 cut(s)	160, 233, 391
GluI	GCNGC	2 cut(s)	157, 267
HaeIII	GGCC	7 cut(s)	132, 222, 352, 900, 1110, 1178, 1232
HapII	CCGG	4 cut(s)	202, 652, 758, 1243
HgaI	GACGC	2 cut(s)	150, 308
HhaI	GCGC	3 cut(s)	161, 234, 392
Hin1I	GRCGYC	2 cut(s)	123, 300
Hin6I	GCGC	3 cut(s)	159, 232, 390
HinP1I	GCGC	3 cut(s)	159, 232, 390
HinfI	GANTC	7 cut(s)	272, 278, 329, 367, 375, 1005, 1271
HpaII	CCGG	4 cut(s)	202, 652, 758, 1243
HphI	GGTGA	8 cut(s)	52, 253, 424, 458, 529, 1133, 1266, 1310
Hpy166II	GTNNAC	3 cut(s)	165, 550, 935
Hpy188I	TCNGA	8 cut(s)	18, 277, 283, 310, 342, 374, 585, 1013
Hpy8I	GTNNAC	3 cut(s)	165, 550, 935
Hpy99I	CGWCG	6 cut(s)	125, 155, 184, 221, 302, 383
HpyAV	CCTTC	8 cut(s)	53, 90, 223, 268, 394, 460, 472, 511
HpyCH4III	ACNGT	2 cut(s)	316, 487
HpyCH4IV	ACGT	2 cut(s)	123, 1323
HpyCH4V	TGCA	5 cut(s)	550, 742, 914, 980, 1227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	432, 793
HpyF3I	CTNAG	5 cut(s)	15, 371, 522, 696, 953
HpySE526I	ACGT	2 cut(s)	123, 1323
Hsp92I	GRCGYC	2 cut(s)	123, 300
HspAI	GCGC	3 cut(s)	159, 232, 390
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	3 cut(s)	606, 673, 839
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	6 cut(s)	573, 880, 924, 1194, 1285, 1333
LweI	GCATC	5 cut(s)	751, 766, 783, 901, 939
MaeI	CTAG	2 cut(s)	812, 1265
MaeII	ACGT	2 cut(s)	123, 1323
MaeIII	GTNAC	2 cut(s)	183, 1210
MalI	GATC	3 cut(s)	608, 675, 841
MboI	GATC	3 cut(s)	606, 673, 839
MhlI	GDGCHC	2 cut(s)	9, 552
MluCI	AATT	4 cut(s)	822, 844, 882, 1234
MlyI	GAGTC	3 cut(s)	272, 384, 1265
MmeI	TCCRAC	3 cut(s)	171, 300, 1152
MroXI	GAANNNNTTC	1 cut(s)	765
MseI	TTAA	4 cut(s)	117, 753, 1023, 1149
MspA1I	CMGCKG	1 cut(s)	1295
MspCI	CTTAAG	1 cut(s)	752
MspI	CCGG	4 cut(s)	202, 652, 758, 1243
Mva1269I	GAATGC	1 cut(s)	1229
MvnI	CGCG	3 cut(s)	161, 232, 392
MwoI	GCNNNNNNNGC	2 cut(s)	432, 793
NdeII	GATC	3 cut(s)	606, 673, 839
NmuCI	GTSAC	1 cut(s)	1210
NspI	RCATGY	2 cut(s)	791, 980
PaeI	GCATGC	1 cut(s)	980
PagI	TCATGA	2 cut(s)	471, 618
PciSI	GCTCTTC	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 306
PctI	GAATGC	1 cut(s)	1229
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	4 cut(s)	272, 329, 367, 1005
PinAI	ACCGGT	2 cut(s)	201, 1242
PkrI	GCNGC	2 cut(s)	158, 268
PleI	GAGTC	3 cut(s)	272, 383, 1265
PpsI	GAGTC	3 cut(s)	272, 383, 1265
Ppu21I	YACGTR	1 cut(s)	1324
PpuMI	RGGWCCY	1 cut(s)	748
Psp5II	RGGWCCY	1 cut(s)	748
PspPI	GGNCC	6 cut(s)	131, 204, 221, 350, 748, 1109
PspPPI	RGGWCCY	1 cut(s)	748
RsaI	GTAC	2 cut(s)	602, 650
RsaNI	GTAC	2 cut(s)	601, 649
SapI	GCTCTTC	1 cut(s)	416
SaqAI	TTAA	4 cut(s)	117, 753, 1023, 1149
SatI	GCNGC	2 cut(s)	157, 267
Sau3AI	GATC	3 cut(s)	606, 673, 839
Sau96I	GGNCC	6 cut(s)	131, 204, 221, 350, 748, 1109
SchI	GAGTC	3 cut(s)	272, 384, 1265
SduI	GDGCHC	2 cut(s)	9, 552
SfaNI	GCATC	5 cut(s)	751, 766, 783, 901, 939
SinI	GGWCC	2 cut(s)	204, 748
SmlI	CTYRAG	2 cut(s)	102, 752
SmoI	CTYRAG	2 cut(s)	102, 752
SphI	GCATGC	1 cut(s)	980
Sse9I	AATT	4 cut(s)	822, 844, 882, 1234
SspMI	CTAG	2 cut(s)	812, 1265
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	2 cut(s)	316, 487
TaiI	ACGT	2 cut(s)	126, 1326
TaqI	TCGA	3 cut(s)	111, 363, 842
TaqII	GACCGA	1 cut(s)	815
TasI	AATT	4 cut(s)	822, 844, 882, 1234
TatI	WGTACW	1 cut(s)	600
TauI	GCSGC	2 cut(s)	159, 269
TfiI	GAWTC	4 cut(s)	272, 329, 367, 1005
Tru1I	TTAA	4 cut(s)	117, 753, 1023, 1149
Tru9I	TTAA	4 cut(s)	117, 753, 1023, 1149
TscAI	CASTG	6 cut(s)	433, 673, 697, 1051, 1111, 1120
TseFI	GTSAC	1 cut(s)	1210
Tsp45I	GTSAC	1 cut(s)	1210
TspDTI	ATGAA	8 cut(s)	159, 453, 479, 530, 607, 635, 843, 1335
TspRI	CASTG	6 cut(s)	433, 673, 697, 1051, 1111, 1120
Vha464I	CTTAAG	1 cut(s)	752
VneI	GTGCAC	1 cut(s)	548
VpaK11BI	GGWCC	2 cut(s)	204, 748
XapI	RAATTY	2 cut(s)	844, 882
XbaI	TCTAGA	1 cut(s)	1264
XceI	RCATGY	2 cut(s)	791, 980
XcmI	CCANNNNNNNNNTGG	1 cut(s)	868
XmiI	GTMKAC	1 cut(s)	934
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	2 cut(s)	812, 1265
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.