Rroxscaffold_3G00273200

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007510
Physical Location & Seq
Forward (+)
65069787 .. 65072712
2926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00273200.1

Sequence Viewer

Length: 546 bp
ATGGGGAAAACGGAGTTTGGCTCGATCTCTAGTTTTCGACGGTTTCCGGCAGATTTCCTTGGGGTTTTGGTTGCTGGGGCAACGCTAATCCTCATTCCTAACCTCTTGCAGCTTGTGTTGGCTGTGGAGGGAGAATCGAAGGTGAAGGAGATCGTGAACGATGGCAGACGAGTTCTTGATTTTGAGATTGAATTTCCGGCCATTTCTACTTGGAATTGGTTGTTGTTGCAGGTCATGAGGAAGGAGACCGTTATCAAGAAGAACCATGTGGACTACATGAAGGCCGAGAGGGATATCCTCACCAAAGTTGTGCACCCTTTTATTACCAAGTGTAAGCTGTACTTGATCATGGATTTCATGAATGGAGGGAATTTGTTCTATCATTTGTACCGGCAAGGGATATTTAGGTTTTCGGGTGTTTTGTTGAGTGCGAGGATCGGGCGAGGTTTTATATCTCTTGAGATAGTGTTTGCTGTTTCACATCTTCACAAGTGCGGGATTGTGCATCGGAACCTTAAGCGAGGAAAATGTGCTCATGGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko01521 ko01522 ko04012 ko04066 ko04140 ko04150 ko04151 ko04152 ko04211 ko04212 ko04213 ko04350 ko04371 ko04666 ko04714 ko04910 ko04931 ko05165 ko05200 ko05205 ko05210 ko05212 ko05221 ko05224 ko05225 ko05226 ko05231 map01521 map01522 map04012 map04066 map04140 map04150 map04151 map04152 map04211 map04212 map04213 map04350 map04371 map04666 map04714 map04910 map04931 map05165 map05200 map05205 map05210 map05212 map05221 map05224 map05225 map05226 map05231
Pfam Domains
Protein Families
Pkinase Pkinase_C

Protein Analysis

181

Amino Acids

20.61

Weight (kDa)

9.69

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 80 - 174 1.6e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 220
AciI CCGC 1 cut(s) 495
AclWI GGATC 1 cut(s) 443
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 2 cut(s) 191, 370
AfaI GTAC 2 cut(s) 341, 389
AflII CTTAAG 1 cut(s) 515
AgsI TTSAA 1 cut(s) 191
AluBI AGCT 2 cut(s) 112, 337
AluI AGCT 2 cut(s) 112, 337
Alw21I GWGCWC 2 cut(s) 315, 535
Alw26I GTCTC 1 cut(s) 239
Alw44I GTGCAC 1 cut(s) 311
AlwI GGATC 1 cut(s) 443
AoxI GGCC 2 cut(s) 198, 282
ApaLI GTGCAC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 2 cut(s) 191, 370
Asp700I GAANNNNTTC 1 cut(s) 374
AsuHPI GGTGA 2 cut(s) 154, 292
BaeGI GKGCMC 1 cut(s) 315
Bbv12I GWGCWC 2 cut(s) 315, 535
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 155
BclI TGATCA 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 1 cut(s) 30
BfrI CTTAAG 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 220
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 512
BmsI GCATC 2 cut(s) 514, 530
BplI GAGNNNNNCTC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 479
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 58
Bse118I RCCGGY 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 545
BseSI GKGCMC 1 cut(s) 315
BseXI GCAGC 1 cut(s) 121
BseYI CCCAGC 1 cut(s) 74
BshFI GGCC 2 cut(s) 200, 284
BsiHKAI GWGCWC 2 cut(s) 315, 535
BsiSI CCGG 3 cut(s) 47, 197, 391
BsmAI GTCTC 1 cut(s) 239
BsnI GGCC 2 cut(s) 200, 284
Bso31I GGTCTC 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 315, 535
Bsp143I GATC 4 cut(s) 24, 150, 345, 435
BspACI CCGC 1 cut(s) 495
BspANI GGCC 2 cut(s) 200, 284
BspHI TCATGA 2 cut(s) 234, 357
BspLI GGNNCC 1 cut(s) 512
BspMI ACCTGC 1 cut(s) 220
BspPI GGATC 1 cut(s) 443
BspTI CTTAAG 1 cut(s) 515
BspTNI GGTCTC 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 390
BssAI RCCGGY 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 4 cut(s) 24, 150, 345, 435
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 42, 250
BstAFI CTTAAG 1 cut(s) 515
BstF5I GGATG 1 cut(s) 545
BstKTI GATC 4 cut(s) 27, 153, 348, 438
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 4 cut(s) 24, 150, 345, 435
BstSLI GKGCMC 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 121
BsuRI GGCC 2 cut(s) 200, 284
BtsCI GGATG 1 cut(s) 545
BveI ACCTGC 1 cut(s) 220
CciI TCATGA 2 cut(s) 234, 357
Cfr10I RCCGGY 1 cut(s) 390
Csp6I GTAC 2 cut(s) 340, 388
CviAII CATG 6 cut(s) 235, 266, 277, 349, 358, 536
CviJI RGCY 6 cut(s) 21, 112, 122, 200, 284, 337
CviKI_1 RGCY 6 cut(s) 21, 112, 122, 200, 284, 337
CviQI GTAC 2 cut(s) 340, 388
DpnI GATC 4 cut(s) 26, 152, 347, 437
DpnII GATC 4 cut(s) 24, 150, 345, 435
EaeI YGGCCR 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 239
Eco32I GATATC 1 cut(s) 295
EcoRV GATATC 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 6 cut(s) 238, 269, 280, 352, 361, 539
FaiI YATR 7 cut(s) 236, 267, 278, 350, 359, 452, 537
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FatI CATG 6 cut(s) 234, 265, 276, 348, 357, 535
FauI CCCGC 1 cut(s) 488
FbaI TGATCA 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 1 cut(s) 30
GluI GCNGC 1 cut(s) 110
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 2 cut(s) 200, 284
HapII CCGG 3 cut(s) 47, 197, 391
Hin1II CATG 6 cut(s) 238, 269, 280, 352, 361, 539
HinfI GANTC 1 cut(s) 134
HpaII CCGG 3 cut(s) 47, 197, 391
HphI GGTGA 2 cut(s) 154, 292
Hpy166II GTNNAC 3 cut(s) 157, 271, 313
Hpy188I TCNGA 1 cut(s) 510
Hpy188III TCNNGA 6 cut(s) 154, 176, 235, 256, 358, 458
Hpy8I GTNNAC 3 cut(s) 157, 271, 313
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 4 cut(s) 133, 139, 235, 274
HpyCH4III ACNGT 2 cut(s) 42, 250
HpyCH4V TGCA 4 cut(s) 109, 229, 313, 505
Hsp92II CATG 6 cut(s) 238, 269, 280, 352, 361, 539
Ksp22I TGATCA 1 cut(s) 345
Kzo9I GATC 4 cut(s) 24, 150, 345, 435
LpnPI CCDG 5 cut(s) 60, 60, 210, 215, 404
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 2 cut(s) 514, 530
MaeI CTAG 1 cut(s) 30
MalI GATC 4 cut(s) 26, 152, 347, 437
MboI GATC 4 cut(s) 24, 150, 345, 435
MboII GAAGA 2 cut(s) 271, 476
MhlI GDGCHC 2 cut(s) 315, 535
MluCI AATT 3 cut(s) 191, 214, 370
MroXI GAANNNNTTC 1 cut(s) 374
MseI TTAA 1 cut(s) 516
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 3 cut(s) 47, 197, 391
NdeII GATC 4 cut(s) 24, 150, 345, 435
NlaIII CATG 6 cut(s) 238, 269, 280, 352, 361, 539
NlaIV GGNNCC 1 cut(s) 512
NmeAIII GCCGAG 1 cut(s) 310
PagI TCATGA 2 cut(s) 234, 357
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 512
RsaI GTAC 2 cut(s) 341, 389
RsaNI GTAC 2 cut(s) 340, 388
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 4 cut(s) 24, 150, 345, 435
SduI GDGCHC 2 cut(s) 315, 535
SetI ASST 8 cut(s) 105, 114, 144, 234, 339, 410, 448, 516
SfaNI GCATC 2 cut(s) 514, 530
SmlI CTYRAG 2 cut(s) 458, 515
SmoI CTYRAG 2 cut(s) 458, 515
Sse9I AATT 3 cut(s) 191, 214, 370
SsiI CCGC 1 cut(s) 495
SspMI CTAG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 2 cut(s) 42, 250
TaqI TCGA 3 cut(s) 23, 37, 137
TasI AATT 3 cut(s) 191, 214, 370
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TseI GCWGC 1 cut(s) 109
TspDTI ATGAA 3 cut(s) 293, 346, 374
TspGWI ACGGA 1 cut(s) 26
Vha464I CTTAAG 1 cut(s) 515
VneI GTGCAC 1 cut(s) 311
XapI RAATTY 2 cut(s) 191, 370
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.