Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000119.1

Orthogroup ID

OG0007510

Physical Location & Seq

Genomic Coordinates Reverse (-)

74209 .. 76501

Gene Structure 2293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000119.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

atggtgtcctcctctcagaacaataacaaaaccctccattcccttcttgcctcaaacatcaccaagctcacaatcccaccttcctcctcctcctcttcttctccgcctcaagacttcgactttaacgacgtcttcggccccccaaccgcctccaacgacggcggcgcttccacttcattctcgccgtcgttactcgtcatccacaaccgctcccactccttcgtcggcccctccccgcgcttcactcccacctcctcctcctccctcctccccttcaccgccgccgactccgactccgaggaagacgaaaacgacgccgtttccgaaaccgtgaaagatgaggaatcggcggttcggaagttcgggccttgggatttcgagattctcagagtcgtcggcaagggcgcgttcgggaaggtgtttcaggtgaggaagaagagcagtgatggcgatgaagatggtgatgggctttatgccatgaaggtcatgaggaaggagactgttatcaagaagaaccatgtggattacatgaaggctgagagggacattctcaccaaagttgtgcacccttttattgttcagctccgctactcttttcagaccaagtgtaagctgtacttgatcatggatttcatgaatggagggcatttgttctatcatttgtaccggcaggggatattcagtgaggatcaggcgaggtcttacactgctgagatagtgtctgctgtttcacatcttcacaaatgcgggattgtgcatcgggaccttaagccggaaaatgttctcatggatgctgatgggcatgtgatgctgacggattttggattagcaaaggaaattgatgaagatagcagatcgaattcaatgtgtggaaccaccgaatacatggctcctgaaattctgctgtctaaaggccacaacaaagatgcagattggtggagcattggtatacttttgtatgagatgctaagtggtcagccaccatttacgcatgcaaatagaaagaaacttcaggagagaatcatcagagagaaagttaaacttccaccttaccttaccactgaagctcactctttgctcaagggattgctacaaaaggaaccatcccaaaggttaggcagtggccccagtggaggtgataatatcaaaagtcataaatggtttaaaacaatcaactggaagaagttggaggccagagaactgctcccaaagttcaagccagatgtgactggaaaagaatgcacggccaattttgaccggtgctggacaacaatgcctctagatgactcaccagctcctacaccaacagcgggtgagcattttcagggatatacttacgtggcacctaacacttggctttcatctgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko04012 ko04066 ko04140 ko04150 ko04151 ko04152 ko04211 ko04212 ko04213 ko04350 ko04371 ko04666 ko04714 ko04910 ko04931 ko05165 ko05200 ko05205 ko05210 ko05212 ko05221 ko05224 ko05225 ko05226 ko05231 map01521 map01522 map04012 map04066 map04140 map04150 map04151 map04152 map04211 map04212 map04213 map04350 map04371 map04666 map04714 map04910 map04931 map05165 map05200 map05205 map05210 map05212 map05221 map05224 map05225 map05226 map05231

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

456

Amino Acids

50.93

Weight (kDa)

6.47

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007510)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g16040 FvH4_5g16040
malus_domestica	MD06G1183400.v1.1
prunus_persica	Prupe.5G182100_v2.0.a1 Prupe.5G182100_v2.0.a1 Prupe.5G182100_v2.0.a1
pyrus_communis	pycom06g16240
rosa_chinensis	RchiOBHm_Chr3g0453311 RchiOBHm_Chr7g0180021
rosa_laevigata	RLG00000005301
rosa_multiflora	Rmu_sc0002191.1_g000005 Rmu_ssc0000119.1_g000001 Rmu_ssc0000119.1_g000003 Rmu_ssc0000119.1_g000022
rosa_roxburghii	Rroxscaffold_3G00273200 Rroxscaffold_3G00273230 Rroxscaffold_7G00177750
rosa_rugosa	Rorug06G0429900.1
rosa_samantha	Rh7BG030000 Rh7CG031500 Rh7CG031700 Rh7DG030700
rosa_wichuraiana	Rw7G002440 Rw7G002460 Rw7G002490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	1342
AccBSI	CCGCTC	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	949
AccII	CGCG	2 cut(s)	238, 407
AclWI	GGATC	1 cut(s)	696
AcoI	YGGCCR	1 cut(s)	1245
AcsI	RAATTY	2 cut(s)	859, 897
AcuI	CTGAAG	2 cut(s)	995, 1083
AcyI	GRCGYC	2 cut(s)	129, 315
AfaI	GTAC	2 cut(s)	617, 665
AfiI	CCNNNNNNNGG	3 cut(s)	772, 1133, 1310
AflII	CTTAAG	1 cut(s)	767
AgeI	ACCGGT	1 cut(s)	1257
AgsI	TTSAA	2 cut(s)	864, 1216
AluBI	AGCT	5 cut(s)	67, 583, 613, 1067, 1295
AluI	AGCT	5 cut(s)	67, 583, 613, 1067, 1295
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	1 cut(s)	491
Alw44I	GTGCAC	1 cut(s)	563
AlwI	GGATC	1 cut(s)	696
AoxI	GGCC	7 cut(s)	136, 226, 365, 913, 1123, 1191, 1245
ApaLI	GTGCAC	1 cut(s)	563
ApoI	RAATTY	2 cut(s)	859, 897
AsiGI	ACCGGT	1 cut(s)	1257
Asp700I	GAANNNNTTC	1 cut(s)	780
AspLEI	GCGC	3 cut(s)	167, 240, 407
AspS9I	GGNCC	5 cut(s)	137, 227, 365, 763, 1124
AsuHPI	GGTGA	8 cut(s)	52, 268, 439, 473, 544, 1148, 1281, 1325
AvaII	GGWCC	1 cut(s)	763
BaeGI	GKGCMC	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	1342
BbsI	GAAGAC	2 cut(s)	124, 309
Bbv12I	GWGCWC	1 cut(s)	567
BccI	CCATC	5 cut(s)	440, 452, 458, 791, 1111
BceAI	ACGGC	4 cut(s)	169, 175, 302, 1260
BclI	TGATCA	1 cut(s)	621
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	1 cut(s)	1280
BfoI	RGCGCY	1 cut(s)	168
BfrI	CTTAAG	1 cut(s)	767
BisI	GCNGC	2 cut(s)	163, 282
BlsI	GCNGC	2 cut(s)	164, 283
Bme18I	GGWCC	1 cut(s)	763
BmgT120I	GGNCC	5 cut(s)	137, 227, 365, 763, 1124
BmiI	GGNNCC	8 cut(s)	139, 229, 764, 874, 891, 1101, 1126, 1344
BmrI	ACTGGG	1 cut(s)	1122
BmsI	GCATC	5 cut(s)	766, 781, 798, 916, 954
BmuI	ACTGGG	1 cut(s)	1122
BpiI	GAAGAC	2 cut(s)	124, 309
BplI	GAGNNNNNCTC	2 cut(s)	1188, 1220
BpuEI	CTTGAG	2 cut(s)	93, 1064
BsaAI	YACGTR	1 cut(s)	1339
BsaHI	GRCGYC	2 cut(s)	129, 315
BsaJI	CCNNGG	2 cut(s)	297, 368
BsaWI	WCCGGW	1 cut(s)	1257
BsaXI	ACNNNNNCTCC	6 cut(s)	194, 224, 278, 308, 931, 961
Bsc4I	CCNNNNNNNGG	3 cut(s)	772, 1133, 1310
Bse118I	RCCGGY	2 cut(s)	666, 1257
Bse1I	ACTGG	3 cut(s)	1128, 1181, 1234
BseDI	CCNNGG	2 cut(s)	297, 368
BseGI	GGATG	3 cut(s)	198, 796, 1103
BseLI	CCNNNNNNNGG	3 cut(s)	772, 1133, 1310
BseMII	CTCAG	4 cut(s)	29, 400, 528, 702
BseNI	ACTGG	3 cut(s)	1128, 1181, 1234
BseRI	GAGGAG	7 cut(s)	76, 79, 82, 244, 247, 250, 257
BseSI	GKGCMC	1 cut(s)	567
Bsh1236I	CGCG	2 cut(s)	238, 407
BshFI	GGCC	7 cut(s)	138, 228, 367, 915, 1125, 1193, 1247
BshNI	GGYRCC	1 cut(s)	1342
BshTI	ACCGGT	1 cut(s)	1257
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	3 cut(s)	667, 773, 1258
BslFI	GGGAC	2 cut(s)	557, 776
BslI	CCNNNNNNNGG	3 cut(s)	772, 1133, 1310
BsmAI	GTCTC	1 cut(s)	491
BsmFI	GGGAC	2 cut(s)	557, 776
BsmI	GAATGC	1 cut(s)	1244
BsnI	GGCC	7 cut(s)	138, 228, 367, 915, 1125, 1193, 1247
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	621, 688, 854
BspANI	GGCC	7 cut(s)	138, 228, 367, 915, 1125, 1193, 1247
BspCNI	CTCAG	4 cut(s)	28, 399, 529, 703
BspFNI	CGCG	2 cut(s)	238, 407
BspHI	TCATGA	2 cut(s)	486, 633
BspLI	GGNNCC	8 cut(s)	139, 229, 764, 874, 891, 1101, 1126, 1344
BspPI	GGATC	1 cut(s)	696
BspQI	GCTCTTC	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	1342
BspTI	CTTAAG	1 cut(s)	767
BsrBI	CCGCTC	1 cut(s)	210
BsrFI	RCCGGY	2 cut(s)	666, 1257
BsrI	ACTGG	3 cut(s)	1128, 1181, 1234
BssAI	RCCGGY	2 cut(s)	666, 1257
BssECI	CCNNGG	2 cut(s)	297, 368
BssMI	GATC	3 cut(s)	621, 688, 854
BssNAI	GTATAC	1 cut(s)	950
BssNI	GRCGYC	2 cut(s)	129, 315
BssT1I	CCWWGG	1 cut(s)	368
Bst1107I	GTATAC	1 cut(s)	950
Bst4CI	ACNGT	2 cut(s)	331, 502
Bst6I	CTCTTC	2 cut(s)	100, 431
BstACI	GRCGYC	2 cut(s)	129, 315
BstAFI	CTTAAG	1 cut(s)	767
BstAPI	GCANNNNNTGC	1 cut(s)	808
BstBAI	YACGTR	1 cut(s)	1339
BstC8I	GCNNGC	1 cut(s)	993
BstDEI	CTNAG	5 cut(s)	15, 386, 537, 711, 968
BstF5I	GGATG	3 cut(s)	198, 796, 1103
BstFNI	CGCG	2 cut(s)	238, 407
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	3 cut(s)	167, 240, 407
BstKTI	GATC	3 cut(s)	624, 691, 857
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	3 cut(s)	621, 688, 854
BstMWI	GCNNNNNNNGC	2 cut(s)	447, 808
BstNSI	RCATGY	2 cut(s)	806, 995
BstSLI	GKGCMC	1 cut(s)	567
BstUI	CGCG	2 cut(s)	238, 407
BstV2I	GAAGAC	2 cut(s)	124, 309
BstZ17I	GTATAC	1 cut(s)	950
BsuRI	GGCC	7 cut(s)	138, 228, 367, 915, 1125, 1193, 1247
BtgZI	GCGATG	1 cut(s)	465
BtsCI	GGATG	3 cut(s)	198, 796, 1103
BtsI	GCAGTG	3 cut(s)	448, 705, 1126
BtsIMutI	CAGTG	6 cut(s)	448, 688, 705, 1059, 1126, 1135
Cac8I	GCNNGC	1 cut(s)	993
CciI	TCATGA	2 cut(s)	486, 633
CfoI	GCGC	3 cut(s)	167, 240, 407
Cfr10I	RCCGGY	2 cut(s)	666, 1257
Cfr13I	GGNCC	5 cut(s)	137, 227, 365, 763, 1124
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	616, 664
CspAI	ACCGGT	1 cut(s)	1257
CviQI	GTAC	2 cut(s)	616, 664
DdeI	CTNAG	5 cut(s)	15, 386, 537, 711, 968
DpnI	GATC	3 cut(s)	623, 690, 856
DpnII	GATC	3 cut(s)	621, 688, 854
DraI	TTTAAA	1 cut(s)	1165
EaeI	YGGCCR	1 cut(s)	1245
Eam1104I	CTCTTC	2 cut(s)	100, 431
EarI	CTCTTC	2 cut(s)	100, 431
EciI	GGCGGA	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	763
Eco57I	CTGAAG	2 cut(s)	995, 1083
EcoO109I	RGGNCCY	1 cut(s)	763
EcoRI	GAATTC	1 cut(s)	859
EcoT14I	CCWWGG	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	368
FalI	AAGNNNNNCTT	4 cut(s)	602, 634, 1026, 1058
FaqI	GGGAC	2 cut(s)	557, 776
FauI	CCCGC	3 cut(s)	243, 740, 1303
FbaI	TGATCA	1 cut(s)	621
FblI	GTMKAC	1 cut(s)	949
Fnu4HI	GCNGC	2 cut(s)	163, 282
FokI	GGATG	3 cut(s)	185, 803, 1090
Fsp4HI	GCNGC	2 cut(s)	163, 282
FspBI	CTAG	1 cut(s)	1280
GlaI	GCGC	3 cut(s)	166, 239, 406
GluI	GCNGC	2 cut(s)	163, 282
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	7 cut(s)	138, 228, 367, 915, 1125, 1193, 1247
HapII	CCGG	3 cut(s)	667, 773, 1258
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	3 cut(s)	167, 240, 407
Hin1I	GRCGYC	2 cut(s)	129, 315
Hin6I	GCGC	3 cut(s)	165, 238, 405
HinP1I	GCGC	3 cut(s)	165, 238, 405
HinfI	GANTC	7 cut(s)	287, 293, 344, 382, 390, 1020, 1286
HpaII	CCGG	3 cut(s)	667, 773, 1258
HphI	GGTGA	8 cut(s)	52, 268, 439, 473, 544, 1148, 1281, 1325
Hpy166II	GTNNAC	2 cut(s)	565, 950
Hpy188I	TCNGA	8 cut(s)	18, 292, 298, 325, 357, 389, 600, 1028
Hpy8I	GTNNAC	2 cut(s)	565, 950
Hpy99I	CGWCG	6 cut(s)	131, 161, 190, 227, 317, 398
HpyAV	CCTTC	8 cut(s)	53, 90, 229, 283, 409, 475, 487, 526
HpyCH4III	ACNGT	2 cut(s)	331, 502
HpyCH4IV	ACGT	2 cut(s)	129, 1338
HpyCH4V	TGCA	5 cut(s)	565, 757, 929, 995, 1242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	447, 808
HpyF3I	CTNAG	5 cut(s)	15, 386, 537, 711, 968
HpySE526I	ACGT	2 cut(s)	129, 1338
Hsp92I	GRCGYC	2 cut(s)	129, 315
HspAI	GCGC	3 cut(s)	165, 238, 405
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	3 cut(s)	621, 688, 854
LguI	GCTCTTC	1 cut(s)	431
LmnI	GCTCC	6 cut(s)	215, 588, 895, 939, 1209, 1300
LweI	GCATC	5 cut(s)	766, 781, 798, 916, 954
MaeI	CTAG	1 cut(s)	1280
MaeII	ACGT	2 cut(s)	129, 1338
MaeIII	GTNAC	2 cut(s)	189, 1225
MalI	GATC	3 cut(s)	623, 690, 856
MbiI	CCGCTC	1 cut(s)	210
MboI	GATC	3 cut(s)	621, 688, 854
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	4 cut(s)	837, 859, 897, 1249
MlyI	GAGTC	4 cut(s)	281, 287, 399, 1280
MmeI	TCCRAC	3 cut(s)	177, 315, 1167
MroXI	GAANNNNTTC	1 cut(s)	780
MseI	TTAA	4 cut(s)	123, 768, 1038, 1164
MspA1I	CMGCKG	1 cut(s)	1310
MspCI	CTTAAG	1 cut(s)	767
MspI	CCGG	3 cut(s)	667, 773, 1258
Mva1269I	GAATGC	1 cut(s)	1244
MvnI	CGCG	2 cut(s)	238, 407
MwoI	GCNNNNNNNGC	2 cut(s)	447, 808
NdeII	GATC	3 cut(s)	621, 688, 854
NlaIV	GGNNCC	8 cut(s)	139, 229, 764, 874, 891, 1101, 1126, 1344
NmuCI	GTSAC	1 cut(s)	1225
NspI	RCATGY	2 cut(s)	806, 995
PaeI	GCATGC	1 cut(s)	995
PagI	TCATGA	2 cut(s)	486, 633
PciSI	GCTCTTC	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 321
PctI	GAATGC	1 cut(s)	1244
PdmI	GAANNNNTTC	1 cut(s)	780
PfeI	GAWTC	3 cut(s)	344, 382, 1020
PinAI	ACCGGT	1 cut(s)	1257
PkrI	GCNGC	2 cut(s)	164, 283
PleI	GAGTC	4 cut(s)	281, 287, 398, 1280
PpsI	GAGTC	4 cut(s)	281, 287, 398, 1280
Ppu21I	YACGTR	1 cut(s)	1339
PpuMI	RGGWCCY	1 cut(s)	763
Psp5II	RGGWCCY	1 cut(s)	763
PspN4I	GGNNCC	8 cut(s)	139, 229, 764, 874, 891, 1101, 1126, 1344
PspPI	GGNCC	5 cut(s)	137, 227, 365, 763, 1124
PspPPI	RGGWCCY	1 cut(s)	763
RsaI	GTAC	2 cut(s)	617, 665
RsaNI	GTAC	2 cut(s)	616, 664
SapI	GCTCTTC	1 cut(s)	431
SaqAI	TTAA	4 cut(s)	123, 768, 1038, 1164
SatI	GCNGC	2 cut(s)	163, 282
Sau3AI	GATC	3 cut(s)	621, 688, 854
Sau96I	GGNCC	5 cut(s)	137, 227, 365, 763, 1124
SchI	GAGTC	4 cut(s)	281, 287, 399, 1280
SduI	GDGCHC	1 cut(s)	567
SfaNI	GCATC	5 cut(s)	766, 781, 798, 916, 954
SinI	GGWCC	1 cut(s)	763
SmlI	CTYRAG	3 cut(s)	108, 767, 1079
SmoI	CTYRAG	3 cut(s)	108, 767, 1079
SphI	GCATGC	1 cut(s)	995
Sse9I	AATT	4 cut(s)	837, 859, 897, 1249
SspMI	CTAG	1 cut(s)	1280
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	2 cut(s)	331, 502
TaiI	ACGT	2 cut(s)	132, 1341
TaqI	TCGA	3 cut(s)	117, 378, 857
TasI	AATT	4 cut(s)	837, 859, 897, 1249
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	2 cut(s)	165, 284
TfiI	GAWTC	3 cut(s)	344, 382, 1020
Tru1I	TTAA	4 cut(s)	123, 768, 1038, 1164
Tru9I	TTAA	4 cut(s)	123, 768, 1038, 1164
TscAI	CASTG	6 cut(s)	448, 688, 712, 1066, 1126, 1135
TseFI	GTSAC	1 cut(s)	1225
Tsp45I	GTSAC	1 cut(s)	1225
TspDTI	ATGAA	8 cut(s)	165, 468, 494, 545, 622, 650, 858, 1350
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	6 cut(s)	448, 688, 712, 1066, 1126, 1135
Vha464I	CTTAAG	1 cut(s)	767
VneI	GTGCAC	1 cut(s)	563
VpaK11BI	GGWCC	1 cut(s)	763
XapI	RAATTY	2 cut(s)	859, 897
XbaI	TCTAGA	1 cut(s)	1279
XceI	RCATGY	2 cut(s)	806, 995
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XmiI	GTMKAC	1 cut(s)	949
XmnI	GAANNNNTTC	1 cut(s)	780
XspI	CTAG	1 cut(s)	1280
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.