Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000152.1

Orthogroup ID

OG0007919

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 10755

Gene Structure 10755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2160 bp

gggcatcagggttgtgttaattcgattgcttggaattctagaggttcacttttagtatctggatcagacgacacacggataaatatttggagctactctggtcggaagcttttgcattctattgagactgggcactgtgcaaacatattttgtacaaaatttgtcccagaaacttctgatgagcttgttgtctctggagctggagatgcagaagttcggttatttaatttgtctcagttaagtgggagaggacctgaagataatgcagttcctccatcagctctgtatcaatgtcacacaagaagagtaaaaaagttagctgttgaagttgggaatcccaatgtggtatggagtgcaagtgaagatggaactttgagacagcatgactttcgagagggtacttcttgccctcctgctggatctgctcatcaagaatgtcgcaacattttacttgacttgcggtctggagcaaagaagtcactagctgatcccccgaaacaaacatttgctctaaaatcttgtgatatcagttccactaggcctcatctgctattagttggtgggagtgatgcatttgcgcgtttatatgatagaaggatgctgcctcctctggcatcctgccggaaaaggacgtctccacctccttgtgttaactatttctgtccgatgcatctctctgatcgtggacgtacaagcttgcacttaactcacgttacatttagcccagatggagaagaggttctacttagttatagtggggagcatgtatatttgatgaacgtaaatcatgctggtggaagtgctgtgcagtatacttcaggagatgcttcaaagataatgagcttcatacctatactgaatgggctagaactgcagcaaccagcatccagtgtcttcagaagtcgtcttcctaaaagacgcaaggccactgctatgcatgaaaagtgcagtaaactaactcaaattgctgagaagtccttggaggaggggaatttttatcatggcattgaggcatgcaatgaggtgctggatggatatggtcgcgatattgggcccatactaaggcatgattgtctctgtactcgtgccgcattgttgctgaagcgtaattggaaaaacgatgctcatatggctataagagattgctataatgcccggaaaattgataactcctctttcagagctcattaccatatgtctgaagctttatcacagttagccaaacataaagaagctgtagaatttgctatggcagcgcattctttagctccgtcaaatcctgaggtaacagcacaattggagaatgtaaaaagaaagcttgctgcagctgagtctgagagaaatggtaagccaaatgatggggcactcaggtctgaacctcggggtggaagagtgctatcccttagtgacatactttaccgatctgagggtaatagtgaagcttcacaagatggtccaagatctgaaagagaggattctgattatgacgaggaattggagttggactttgaaacgtccatctcaggtgatgaagagcaagatatcgagcccaatattctacatggaagtgtaaatctgagaattcatcgaagaagtgattcttctagagaagttgaaggggcaaatggctcttgtggatcaccttcatcatcatctcaaaatgaaagactcccgtatcagagatatgtcggtcattgtaatgttggaactgacataaaacaagccagctttcttggccagagaggtgaatatgttgctagtggaagtgatgatggcagatggtttatctgggagaaacgaactggcagactaataaaaatgcttcaaggagatgaagctgttgtgaactgtgtacagtgccatccctctgattgtgttgtggcaactagtgggattgacagtacaataaagttatggaccccaagtgcttcggtcccatctattgtagctggtggagccgctggaccagaaactgctaacatttctagcgttctgtcagctaatcagcgcagattaagccataatcgtacagccgttctgaaattttggagcattttcgaatgcatgaatttactgaaggaagcttgcacccatttgagtgtgctcagagctaaacaaggttataactggagcatggagataaattatgctcgactgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031974 GO:0031981 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

719

Amino Acids

79.11

Weight (kDa)

6.99

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	1 - 134	2.7e-15	WDR5 beta-propeller domain
WD40	PF00400	1 - 31	1.3e-06	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	1 - 79	4.3e-11	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	1 - 78	5.7e-08	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	2 - 79	6.2e-11	THOC3 beta-propeller domain
WD40_Prp19	PF24814	6 - 135	4.8e-10	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	558 - 640	1e-12	WDR5 beta-propeller domain
WD40_Prp19	PF24814	574 - 644	1.7e-07	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	580 - 640	1.3e-06	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	581 - 640	8.8e-07	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10940 AT5G10940
fragaria_vesca	FvH4_5g35830 FvH4_5g35830 FvH4_5g35830
malus_domestica	MD08G1192800.v1.1 MD15G1381500.v1.1
prunus_persica	Prupe.1G527400_v2.0.a1 Prupe.1G527400_v2.0.a1 Prupe.1G527400_v2.0.a1 Prupe.1G527400_v2.0.a1
pyrus_communis	pycom08g16630 pycom15g34170
rosa_chinensis	RchiOBHm_Chr7g0237521
rosa_laevigata	RLG00000000996
rosa_multiflora	Rmu_ssc0000152.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224060
rosa_rugosa	Rorug07G0303800 Rorug07G0303900
rosa_samantha	Rh7AG461500 Rh7BG431700 Rh7CG478700 Rh7DG447900
rosa_wichuraiana	Rw7G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2124
AatII	GACGTC	1 cut(s)	635
AccB7I	CCANNNNNTGG	1 cut(s)	1358
AccI	GTMKAC	1 cut(s)	812
AccII	CGCG	2 cut(s)	580, 1044
AciI	CCGC	3 cut(s)	460, 1089, 1959
AclWI	GGATC	4 cut(s)	70, 427, 482, 1645
AcoI	YGGCCR	1 cut(s)	1735
AcsI	RAATTY	7 cut(s)	34, 158, 991, 1241, 1581, 2042, 2068
AcuI	CTGAAG	6 cut(s)	276, 801, 880, 1121, 1221, 2096
AcyI	GRCGYC	1 cut(s)	632
AfaI	GTAC	7 cut(s)	154, 400, 691, 1081, 1854, 1903, 2029
AfiI	CCNNNNNNNGG	5 cut(s)	416, 1062, 1358, 1385, 1426
AgsI	TTSAA	5 cut(s)	326, 831, 1511, 1616, 1826
AhdI	GACNNNNNGTC	1 cut(s)	460
AhlI	ACTAGT	1 cut(s)	1886
AloI	GAACNNNNNNTCC	2 cut(s)	723, 755
Alw21I	GWGCWC	2 cut(s)	1186, 2106
Alw26I	GTCTC	6 cut(s)	119, 196, 237, 370, 639, 1079
AlwI	GGATC	4 cut(s)	70, 427, 482, 1645
AlwNI	CAGNNNCTG	1 cut(s)	1973
Ama87I	CYCGRG	1 cut(s)	1380
AoxI	GGCC	4 cut(s)	539, 924, 1052, 1735
ApaI	GGGCCC	1 cut(s)	1056
ApeKI	GCWGC	5 cut(s)	601, 874, 1253, 1322, 1325
ApoI	RAATTY	7 cut(s)	34, 158, 991, 1241, 1581, 2042, 2068
Asp700I	GAANNNNTTC	2 cut(s)	738, 1597
AspLEI	GCGC	3 cut(s)	580, 1258, 2010
AspS9I	GGNCC	7 cut(s)	251, 1052, 1053, 1454, 1917, 1933, 1964
AsuC2I	CCSGG	1 cut(s)	1156
AsuHPI	GGTGA	3 cut(s)	1538, 1632, 1757
AsuII	TTCGAA	1 cut(s)	2058
AvaI	CYCGRG	1 cut(s)	1380
AvaII	GGWCC	5 cut(s)	251, 1454, 1917, 1933, 1964
AxyI	CCTNAGG	1 cut(s)	1281
BaeGI	GKGCMC	3 cut(s)	135, 1056, 1366
BaeI	ACNNNNGTAYC	2 cut(s)	1658, 1691
BalI	TGGCCA	1 cut(s)	1737
BanII	GRGCYC	3 cut(s)	1056, 1186, 1551
BarI	GAAGNNNNNNTAC	2 cut(s)	726, 758
BauI	CACGAG	1 cut(s)	1083
BbsI	GAAGAC	2 cut(s)	886, 899
Bbv12I	GWGCWC	2 cut(s)	1186, 2106
BbvI	GCAGC	5 cut(s)	588, 886, 1265, 1309, 1337
BceAI	ACGGC	1 cut(s)	2018
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BcnI	CCSGG	1 cut(s)	1156
BcoDI	GTCTC	6 cut(s)	119, 196, 237, 370, 639, 1079
BcuI	ACTAGT	1 cut(s)	1886
BfaI	CTAG	8 cut(s)	39, 482, 537, 866, 1605, 1758, 1887, 1986
BfmI	CTRYAG	3 cut(s)	872, 1236, 1323
BglII	AGATCT	1 cut(s)	1460
BisI	GCNGC	7 cut(s)	602, 875, 1089, 1254, 1323, 1326, 1959
BlsI	GCNGC	7 cut(s)	603, 876, 1090, 1255, 1324, 1327, 1960
Bme1390I	CCNGG	1 cut(s)	1156
Bme18I	GGWCC	5 cut(s)	251, 1454, 1917, 1933, 1964
BmeRI	GACNNNNNGTC	1 cut(s)	460
BmeT110I	CYCGRG	1 cut(s)	1380
BmgT120I	GGNCC	7 cut(s)	251, 1052, 1053, 1454, 1917, 1933, 1964
BmiI	GGNNCC	4 cut(s)	1054, 1919, 1935, 1957
BmrFI	CCNGG	1 cut(s)	1156
BmrI	ACTGGG	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	138
BpiI	GAAGAC	2 cut(s)	886, 899
BpmI	CTGGAG	4 cut(s)	216, 222, 486, 2149
Bpu14I	TTCGAA	1 cut(s)	2058
BpuMI	CCSGG	1 cut(s)	1156
BsaHI	GRCGYC	1 cut(s)	632
BsaJI	CCNNGG	2 cut(s)	978, 1379
BsaXI	ACNNNNNCTCC	4 cut(s)	343, 373, 723, 753
Bsc4I	CCNNNNNNNGG	5 cut(s)	416, 1062, 1358, 1385, 1426
Bse1I	ACTGG	4 cut(s)	133, 888, 1807, 2132
Bse21I	CCTNAGG	1 cut(s)	1281
Bse3DI	GCAATG	1 cut(s)	1024
BseDI	CCNNGG	2 cut(s)	978, 1379
BseGI	GGATG	5 cut(s)	603, 614, 884, 1036, 1861
BseLI	CCNNNNNNNGG	5 cut(s)	416, 1062, 1358, 1385, 1426
BseMI	GCAATG	1 cut(s)	1024
BseNI	ACTGG	4 cut(s)	133, 888, 1807, 2132
BseRI	GAGGAG	3 cut(s)	597, 998, 1162
BseSI	GKGCMC	3 cut(s)	135, 1056, 1366
BseXI	GCAGC	5 cut(s)	588, 886, 1265, 1309, 1337
BsgI	GTGCAG	2 cut(s)	827, 967
Bsh1236I	CGCG	2 cut(s)	580, 1044
BshFI	GGCC	4 cut(s)	541, 926, 1054, 1737
BsiHKAI	GWGCWC	2 cut(s)	1186, 2106
BsiHKCI	CYCGRG	1 cut(s)	1380
BsiSI	CCGG	2 cut(s)	622, 1156
BslFI	GGGAC	2 cut(s)	149, 1919
BslI	CCNNNNNNNGG	5 cut(s)	416, 1062, 1358, 1385, 1426
BsmAI	GTCTC	6 cut(s)	119, 196, 237, 370, 639, 1079
BsmBI	CGTCTC	1 cut(s)	639
BsmFI	GGGAC	2 cut(s)	149, 1919
BsmI	GAATGC	3 cut(s)	115, 1258, 2066
BsnI	GGCC	4 cut(s)	541, 926, 1054, 1737
BsoBI	CYCGRG	1 cut(s)	1380
Bsp119I	TTCGAA	1 cut(s)	2058
Bsp120I	GGGCCC	1 cut(s)	1052
Bsp1286I	GDGCHC	6 cut(s)	135, 1056, 1186, 1366, 1551, 2106
Bsp1407I	TGTACA	2 cut(s)	152, 1852
Bsp143I	GATC	7 cut(s)	62, 419, 487, 679, 1421, 1460, 1637
Bsp68I	TCGCGA	1 cut(s)	1044
BspACI	CCGC	3 cut(s)	460, 1089, 1959
BspANI	GGCC	4 cut(s)	541, 926, 1054, 1737
BspFNI	CGCG	2 cut(s)	580, 1044
BspLI	GGNNCC	4 cut(s)	1054, 1919, 1935, 1957
BspMAI	CTGCAG	2 cut(s)	876, 1327
BspPI	GGATC	4 cut(s)	70, 427, 482, 1645
BspQI	GCTCTTC	1 cut(s)	1527
BspT104I	TTCGAA	1 cut(s)	2058
BsrDI	GCAATG	1 cut(s)	1024
BsrGI	TGTACA	2 cut(s)	152, 1852
BsrI	ACTGG	4 cut(s)	133, 888, 1807, 2132
BssECI	CCNNGG	2 cut(s)	978, 1379
BssMI	GATC	7 cut(s)	62, 419, 487, 679, 1421, 1460, 1637
BssNAI	GTATAC	1 cut(s)	813
BssNI	GRCGYC	1 cut(s)	632
BssSI	CACGAG	1 cut(s)	1083
BssT1I	CCWWGG	1 cut(s)	978
Bst1107I	GTATAC	1 cut(s)	813
Bst2BI	CACGAG	1 cut(s)	1083
Bst4CI	ACNGT	6 cut(s)	137, 1215, 1850, 1857, 1901, 2157
Bst6I	CTCTTC	4 cut(s)	298, 729, 1384, 1527
BstACI	GRCGYC	1 cut(s)	632
BstAUI	TGTACA	2 cut(s)	152, 1852
BstBI	TTCGAA	1 cut(s)	2058
BstC8I	GCNNGC	5 cut(s)	698, 1015, 1320, 1726, 2086
BstF5I	GGATG	5 cut(s)	603, 614, 884, 1036, 1861
BstFNI	CGCG	2 cut(s)	580, 1044
BstHHI	GCGC	3 cut(s)	580, 1258, 2010
BstKTI	GATC	7 cut(s)	65, 422, 490, 682, 1424, 1463, 1640
BstMAI	GTCTC	6 cut(s)	119, 196, 237, 370, 639, 1079
BstMBI	GATC	7 cut(s)	62, 419, 487, 679, 1421, 1460, 1637
BstMWI	GCNNNNNNNGC	9 cut(s)	206, 422, 547, 871, 1130, 1253, 1734, 1955, 2016
BstNSI	RCATGY	2 cut(s)	767, 1017
BstSCI	CCNGG	1 cut(s)	1154
BstSFI	CTRYAG	3 cut(s)	872, 1236, 1323
BstSLI	GKGCMC	3 cut(s)	135, 1056, 1366
BstUI	CGCG	2 cut(s)	580, 1044
BstV1I	GCAGC	5 cut(s)	588, 886, 1265, 1309, 1337
BstV2I	GAAGAC	2 cut(s)	886, 899
BstX2I	RGATCY	2 cut(s)	419, 1460
BstYI	RGATCY	2 cut(s)	419, 1460
BstZ17I	GTATAC	1 cut(s)	813
Bsu36I	CCTNAGG	1 cut(s)	1281
BsuRI	GGCC	4 cut(s)	541, 926, 1054, 1737
BtsCI	GGATG	5 cut(s)	603, 614, 884, 1036, 1861
BtsI	GCAGTG	1 cut(s)	927
BtsIMutI	CAGTG	4 cut(s)	133, 895, 927, 1862
BtuMI	TCGCGA	1 cut(s)	1044
Cac8I	GCNNGC	5 cut(s)	698, 1015, 1320, 1726, 2086
CaiI	CAGNNNCTG	1 cut(s)	1973
CfoI	GCGC	3 cut(s)	580, 1258, 2010
Cfr13I	GGNCC	7 cut(s)	251, 1052, 1053, 1454, 1917, 1933, 1964
CseI	GACGC	1 cut(s)	927
Csp6I	GTAC	7 cut(s)	153, 399, 690, 1080, 1853, 1902, 2028
CviQI	GTAC	7 cut(s)	153, 399, 690, 1080, 1853, 1902, 2028
DpnI	GATC	7 cut(s)	64, 421, 489, 681, 1423, 1462, 1639
DpnII	GATC	7 cut(s)	62, 419, 487, 679, 1421, 1460, 1637
DriI	GACNNNNNGTC	1 cut(s)	460
EaeI	YGGCCR	1 cut(s)	1735
Eam1104I	CTCTTC	4 cut(s)	298, 729, 1384, 1527
Eam1105I	GACNNNNNGTC	1 cut(s)	460
EarI	CTCTTC	4 cut(s)	298, 729, 1384, 1527
Ecl136II	GAGCTC	1 cut(s)	1184
Eco130I	CCWWGG	1 cut(s)	978
Eco147I	AGGCCT	1 cut(s)	541
Eco24I	GRGCYC	3 cut(s)	1056, 1186, 1551
Eco32I	GATATC	2 cut(s)	526, 1543
Eco47I	GGWCC	5 cut(s)	251, 1454, 1917, 1933, 1964
Eco53kI	GAGCTC	1 cut(s)	1184
Eco57I	CTGAAG	6 cut(s)	276, 801, 880, 1121, 1221, 2096
Eco81I	CCTNAGG	1 cut(s)	1281
Eco88I	CYCGRG	1 cut(s)	1380
EcoICRI	GAGCTC	1 cut(s)	1184
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRI	GAATTC	2 cut(s)	34, 1581
EcoRV	GATATC	2 cut(s)	526, 1543
EcoT14I	CCWWGG	1 cut(s)	978
EcoT22I	ATGCAT	4 cut(s)	574, 672, 939, 2066
EcoT38I	GRGCYC	3 cut(s)	1056, 1186, 1551
ErhI	CCWWGG	1 cut(s)	978
Esp3I	CGTCTC	1 cut(s)	639
FalI	AAGNNNNNCTT	2 cut(s)	1585, 1617
FaqI	GGGAC	2 cut(s)	149, 1919
FauNDI	CATATG	2 cut(s)	1128, 1194
FblI	GTMKAC	1 cut(s)	812
Fnu4HI	GCNGC	7 cut(s)	602, 875, 1089, 1254, 1323, 1326, 1959
FokI	GGATG	5 cut(s)	601, 610, 871, 1043, 1848
FriOI	GRGCYC	3 cut(s)	1056, 1186, 1551
Fsp4HI	GCNGC	7 cut(s)	602, 875, 1089, 1254, 1323, 1326, 1959
FspBI	CTAG	8 cut(s)	39, 482, 537, 866, 1605, 1758, 1887, 1986
GlaI	GCGC	3 cut(s)	579, 1257, 2009
GluI	GCNGC	7 cut(s)	602, 875, 1089, 1254, 1323, 1326, 1959
GsuI	CTGGAG	4 cut(s)	216, 222, 486, 2149
HaeIII	GGCC	4 cut(s)	541, 926, 1054, 1737
HapII	CCGG	2 cut(s)	622, 1156
HgaI	GACGC	1 cut(s)	927
HhaI	GCGC	3 cut(s)	580, 1258, 2010
Hin1I	GRCGYC	1 cut(s)	632
Hin6I	GCGC	3 cut(s)	578, 1256, 2008
HinP1I	GCGC	3 cut(s)	578, 1256, 2008
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HindIII	AAGCTT	6 cut(s)	107, 694, 1203, 1316, 1440, 2082
HinfI	GANTC	5 cut(s)	334, 1331, 1475, 1598, 1668
HpaI	GTTAAC	1 cut(s)	652
HpaII	CCGG	2 cut(s)	622, 1156
HphI	GGTGA	3 cut(s)	1538, 1632, 1757
Hpy166II	GTNNAC	7 cut(s)	47, 652, 686, 813, 953, 1846, 1853
Hpy8I	GTNNAC	7 cut(s)	47, 652, 686, 813, 953, 1846, 1853
HpyAV	CCTTC	4 cut(s)	588, 1610, 1653, 2071
HpyCH4III	ACNGT	6 cut(s)	137, 1215, 1850, 1857, 1901, 2157
HpyCH4IV	ACGT	5 cut(s)	632, 688, 711, 780, 1514
HpyF10VI	GCNNNNNNNGC	9 cut(s)	206, 422, 547, 871, 1130, 1253, 1734, 1955, 2016
HpySE526I	ACGT	5 cut(s)	632, 688, 711, 780, 1514
Hsp92I	GRCGYC	1 cut(s)	632
HspAI	GCGC	3 cut(s)	578, 1256, 2008
KspAI	GTTAAC	1 cut(s)	652
Kzo9I	GATC	7 cut(s)	62, 419, 487, 679, 1421, 1460, 1637
LguI	GCTCTTC	1 cut(s)	1527
LmnI	GCTCC	8 cut(s)	90, 197, 467, 760, 1273, 1955, 2049, 2130
Lsp1109I	GCAGC	5 cut(s)	588, 886, 1265, 1309, 1337
MaeI	CTAG	8 cut(s)	39, 482, 537, 866, 1605, 1758, 1887, 1986
MaeII	ACGT	5 cut(s)	632, 688, 711, 780, 1514
MaeIII	GTNAC	5 cut(s)	293, 477, 712, 1285, 1406
MalI	GATC	7 cut(s)	64, 421, 489, 681, 1423, 1462, 1639
MboI	GATC	7 cut(s)	62, 419, 487, 679, 1421, 1460, 1637
MfeI	CAATTG	1 cut(s)	1295
MflI	RGATCY	2 cut(s)	419, 1460
MhlI	GDGCHC	6 cut(s)	135, 1056, 1186, 1366, 1551, 2106
MlsI	TGGCCA	1 cut(s)	1737
MluNI	TGGCCA	1 cut(s)	1737
MlyI	GAGTC	2 cut(s)	1340, 1662
MmeI	TCCRAC	3 cut(s)	83, 1482, 1684
Mox20I	TGGCCA	1 cut(s)	1737
Mph1103I	ATGCAT	4 cut(s)	574, 672, 939, 2066
MroXI	GAANNNNTTC	2 cut(s)	738, 1597
MscI	TGGCCA	1 cut(s)	1737
MseI	TTAA	6 cut(s)	18, 225, 239, 651, 704, 2015
MslI	CAYNNNNRTG	5 cut(s)	792, 932, 1566, 1698, 2097
Msp20I	TGGCCA	1 cut(s)	1737
MspA1I	CMGCKG	2 cut(s)	1328, 1961
MspI	CCGG	2 cut(s)	622, 1156
MspR9I	CCNGG	1 cut(s)	1156
MunI	CAATTG	1 cut(s)	1295
Mva1269I	GAATGC	3 cut(s)	115, 1258, 2066
MvnI	CGCG	2 cut(s)	580, 1044
MwoI	GCNNNNNNNGC	9 cut(s)	206, 422, 547, 871, 1130, 1253, 1734, 1955, 2016
NciI	CCSGG	1 cut(s)	1156
NdeI	CATATG	2 cut(s)	1128, 1194
NdeII	GATC	7 cut(s)	62, 419, 487, 679, 1421, 1460, 1637
NlaIV	GGNNCC	4 cut(s)	1054, 1919, 1935, 1957
NmuCI	GTSAC	3 cut(s)	293, 477, 1406
NruI	TCGCGA	1 cut(s)	1044
NsiI	ATGCAT	4 cut(s)	574, 672, 939, 2066
NspI	RCATGY	2 cut(s)	767, 1017
NspV	TTCGAA	1 cut(s)	2058
PaeI	GCATGC	1 cut(s)	1017
PceI	AGGCCT	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	1527
PctI	GAATGC	3 cut(s)	115, 1258, 2066
PdmI	GAANNNNTTC	2 cut(s)	738, 1597
PfeI	GAWTC	3 cut(s)	334, 1475, 1598
PflMI	CCANNNNNTGG	1 cut(s)	1358
PkrI	GCNGC	7 cut(s)	603, 876, 1090, 1255, 1324, 1327, 1960
PleI	GAGTC	2 cut(s)	1339, 1662
PpsI	GAGTC	2 cut(s)	1339, 1662
PpuMI	RGGWCCY	1 cut(s)	251
PsiI	TTATAA	1 cut(s)	2124
Psp124BI	GAGCTC	1 cut(s)	1186
Psp5II	RGGWCCY	1 cut(s)	251
PspN4I	GGNNCC	4 cut(s)	1054, 1919, 1935, 1957
PspOMI	GGGCCC	1 cut(s)	1052
PspPI	GGNCC	7 cut(s)	251, 1052, 1053, 1454, 1917, 1933, 1964
PspPPI	RGGWCCY	1 cut(s)	251
PstI	CTGCAG	2 cut(s)	876, 1327
PstNI	CAGNNNCTG	1 cut(s)	1973
PsuI	RGATCY	2 cut(s)	419, 1460
PvuII	CAGCTG	1 cut(s)	1328
RruI	TCGCGA	1 cut(s)	1044
RsaI	GTAC	7 cut(s)	154, 400, 691, 1081, 1854, 1903, 2029
RsaNI	GTAC	7 cut(s)	153, 399, 690, 1080, 1853, 1902, 2028
RseI	CAYNNNNRTG	5 cut(s)	792, 932, 1566, 1698, 2097
SacI	GAGCTC	1 cut(s)	1186
SapI	GCTCTTC	1 cut(s)	1527
SaqAI	TTAA	6 cut(s)	18, 225, 239, 651, 704, 2015
SatI	GCNGC	7 cut(s)	602, 875, 1089, 1254, 1323, 1326, 1959
Sau3AI	GATC	7 cut(s)	62, 419, 487, 679, 1421, 1460, 1637
Sau96I	GGNCC	7 cut(s)	251, 1052, 1053, 1454, 1917, 1933, 1964
SchI	GAGTC	2 cut(s)	1340, 1662
ScrFI	CCNGG	1 cut(s)	1156
SduI	GDGCHC	6 cut(s)	135, 1056, 1186, 1366, 1551, 2106
SfcI	CTRYAG	3 cut(s)	872, 1236, 1323
SfuI	TTCGAA	1 cut(s)	2058
SinI	GGWCC	5 cut(s)	251, 1454, 1917, 1933, 1964
SmiMI	CAYNNNNRTG	5 cut(s)	792, 932, 1566, 1698, 2097
SpeI	ACTAGT	1 cut(s)	1886
SphI	GCATGC	1 cut(s)	1017
SseBI	AGGCCT	1 cut(s)	541
SsiI	CCGC	3 cut(s)	460, 1089, 1959
SspI	AATATT	2 cut(s)	85, 1555
SspMI	CTAG	8 cut(s)	39, 482, 537, 866, 1605, 1758, 1887, 1986
SstI	GAGCTC	1 cut(s)	1186
StuI	AGGCCT	1 cut(s)	541
StyD4I	CCNGG	1 cut(s)	1154
StyI	CCWWGG	1 cut(s)	978
TaaI	ACNGT	6 cut(s)	137, 1215, 1850, 1857, 1901, 2157
TaiI	ACGT	5 cut(s)	635, 691, 714, 783, 1517
TaqI	TCGA	6 cut(s)	23, 391, 1545, 1588, 2058, 2152
TaqII	GACCGA	2 cut(s)	1679, 1921
TatI	WGTACW	4 cut(s)	152, 1079, 1852, 1901
TauI	GCSGC	2 cut(s)	1091, 1961
TfiI	GAWTC	3 cut(s)	334, 1475, 1598
Tru1I	TTAA	6 cut(s)	18, 225, 239, 651, 704, 2015
Tru9I	TTAA	6 cut(s)	18, 225, 239, 651, 704, 2015
TscAI	CASTG	4 cut(s)	140, 895, 934, 1862
TseFI	GTSAC	3 cut(s)	293, 477, 1406
TseI	GCWGC	5 cut(s)	601, 874, 1253, 1322, 1325
Tsp45I	GTSAC	3 cut(s)	293, 477, 1406
TspDTI	ATGAA	9 cut(s)	791, 835, 954, 1545, 1574, 1635, 1677, 1848, 2081
TspGWI	ACGGA	2 cut(s)	91, 1260
TspRI	CASTG	4 cut(s)	140, 895, 934, 1862
Van91I	CCANNNNNTGG	1 cut(s)	1358
VpaK11BI	GGWCC	5 cut(s)	251, 1454, 1917, 1933, 1964
XapI	RAATTY	7 cut(s)	34, 158, 991, 1241, 1581, 2042, 2068
XbaI	TCTAGA	2 cut(s)	38, 1604
XceI	RCATGY	2 cut(s)	767, 1017
XmiI	GTMKAC	1 cut(s)	812
XmnI	GAANNNNTTC	2 cut(s)	738, 1597
XspI	CTAG	8 cut(s)	39, 482, 537, 866, 1605, 1758, 1887, 1986
ZraI	GACGTC	1 cut(s)	633
Zsp2I	ATGCAT	4 cut(s)	574, 672, 939, 2066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.