Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007919

Physical Location & Seq

Genomic Coordinates Reverse (-)

30393428 .. 30394899

Gene Structure 1472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0303900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGTTAGTCCAGCACCCTGCAGCCGATCCTGGTCTATAAGCGAGGACTCGCTTAAAAGATATGTGCAGTTTGCAAGTGAGAGCTGTATACAAGAGTTACTGTCTGCTTCAGACTCCAACAGGGGGATTGGGATTAATAATGGCAATGATGGCTGGAAGGTTCTTACTCTTGAAAATGGAGTGGAGATATCGAAACGAAGGTCTGGAAATGGATCATTCCACACCTTCCGCAGCCGCTGGCTGCTCAGATCAGTATCACCCCAACAATTTATCACTGTTGCTAATGCCATAGATGCTGCCAAGCAATGGGATTCTGATCTGGTAGAAGCAAGGTACATAAAAGATCTTGACGACAACCTCAGCATCATCCGGCTCAAGTTTGGAGATAATTCCAAGCCCCTATTTAGAAACAGAGAATTTATAGTCTATGAGCGACGGGAAACCATGGAAGATGGCACTCTGGTGGTAGCAGTTGCTTCACTTCCAAAGGAGATAGCTGCTGGATTGCAACCAAAGCAAAATAATGCAATCAGGGGACTGCTGTTGCAATCAGGATGGGTCGTTGAGAGGCTTGATGGTGACTCTTGCATGGTCACCTATGTTGTTCAGTTGGATCCTGCAGGCTGGATGCCCAAGTGCTTTGTTAATCGACTTAACAACAAACTAGTTATGATCATTGAAAATCTTAAGAAATTGGCGCAAGCTTGTCCAATTGATGGGGATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031974 GO:0031981 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

242

Amino Acids

27.11

Weight (kDa)

7.58

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	50 - 221	6.5e-13	START domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10940 AT5G10940
fragaria_vesca	FvH4_5g35830 FvH4_5g35830 FvH4_5g35830
malus_domestica	MD08G1192800.v1.1 MD15G1381500.v1.1
prunus_persica	Prupe.1G527400_v2.0.a1 Prupe.1G527400_v2.0.a1 Prupe.1G527400_v2.0.a1 Prupe.1G527400_v2.0.a1
pyrus_communis	pycom08g16630 pycom15g34170
rosa_chinensis	RchiOBHm_Chr7g0237521
rosa_laevigata	RLG00000000996
rosa_multiflora	Rmu_ssc0000152.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224060
rosa_rugosa	Rorug07G0303800 Rorug07G0303900
rosa_samantha	Rh7AG461500 Rh7BG431700 Rh7CG478700 Rh7DG447900
rosa_wichuraiana	Rw7G038190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	306, 716
AccI	GTMKAC	1 cut(s)	88
AciI	CCGC	2 cut(s)	229, 235
AclWI	GGATC	4 cut(s)	21, 220, 608, 621
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	123, 306, 716
AflII	CTTAAG	1 cut(s)	686
AgsI	TTSAA	2 cut(s)	173, 680
AhlI	ACTAGT	1 cut(s)	664
AjnI	CCWGG	1 cut(s)	29
AleI	CACNNNNGTG	1 cut(s)	461
AluBI	AGCT	3 cut(s)	84, 497, 704
AluI	AGCT	3 cut(s)	84, 497, 704
AlwI	GGATC	4 cut(s)	21, 220, 608, 621
AlwNI	CAGNNNCTG	1 cut(s)	237
ApeKI	GCWGC	5 cut(s)	21, 231, 241, 296, 497
ApoI	RAATTY	1 cut(s)	416
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AseI	ATTAAT	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	700
AsuHPI	GGTGA	3 cut(s)	249, 586, 590
BamHI	GGATCC	1 cut(s)	613
BbvCI	CCTCAGC	1 cut(s)	359
BbvI	GCAGC	5 cut(s)	33, 228, 243, 283, 484
BccI	CCATC	5 cut(s)	143, 446, 549, 569, 710
BciT130I	CCWGG	1 cut(s)	31
BciVI	GTATCC	1 cut(s)	715
BclI	TGATCA	1 cut(s)	672
BcuI	ACTAGT	1 cut(s)	664
BfaI	CTAG	1 cut(s)	665
BfmI	CTRYAG	2 cut(s)	19, 618
BfrI	CTTAAG	1 cut(s)	686
BfuI	GTATCC	1 cut(s)	715
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	6 cut(s)	22, 232, 235, 242, 297, 498
BlsI	GCNGC	6 cut(s)	23, 233, 236, 243, 298, 499
Bme1390I	CCNGG	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	3 cut(s)	283, 372, 618
Bpu10I	CCTNAGC	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	359
BsaBI	GATNNNNATC	2 cut(s)	253, 315
BsaJI	CCNNGG	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 306, 716
Bse3DI	GCAATG	2 cut(s)	151, 311
Bse8I	GATNNNNATC	2 cut(s)	253, 315
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	3 cut(s)	366, 560, 633
BseJI	GATNNNNATC	2 cut(s)	253, 315
BseLI	CCNNNNNNNGG	3 cut(s)	123, 306, 716
BseMI	GCAATG	2 cut(s)	151, 311
BseMII	CTCAG	2 cut(s)	259, 373
BseXI	GCAGC	5 cut(s)	33, 228, 243, 283, 484
BsgI	GTGCAG	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	3 cut(s)	123, 306, 716
BsmFI	GGGAC	1 cut(s)	549
Bsp143I	GATC	7 cut(s)	26, 212, 248, 316, 343, 613, 672
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	2 cut(s)	229, 235
BspCNI	CTCAG	2 cut(s)	258, 372
BspLI	GGNNCC	1 cut(s)	615
BspMAI	CTGCAG	2 cut(s)	23, 622
BspPI	GGATC	4 cut(s)	21, 220, 608, 621
BspTI	CTTAAG	1 cut(s)	686
BsrDI	GCAATG	2 cut(s)	151, 311
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	7 cut(s)	26, 212, 248, 316, 343, 613, 672
BssNAI	GTATAC	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	444
Bst1107I	GTATAC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	102, 277
BstAFI	CTTAAG	1 cut(s)	686
BstC8I	GCNNGC	3 cut(s)	239, 622, 702
BstDEI	CTNAG	2 cut(s)	245, 359
BstDSI	CCRYGG	1 cut(s)	444
BstEII	GGTNACC	1 cut(s)	592
BstF5I	GGATG	3 cut(s)	366, 560, 633
BstHHI	GCGC	1 cut(s)	700
BstKTI	GATC	7 cut(s)	29, 215, 251, 319, 346, 616, 675
BstMBI	GATC	7 cut(s)	26, 212, 248, 316, 343, 613, 672
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 293, 514
BstNI	CCWGG	1 cut(s)	31
BstPI	GGTNACC	1 cut(s)	592
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	2 cut(s)	19, 618
BstV1I	GCAGC	5 cut(s)	33, 228, 243, 283, 484
BstX2I	RGATCY	2 cut(s)	343, 613
BstYI	RGATCY	2 cut(s)	343, 613
BstZ17I	GTATAC	1 cut(s)	89
BsuI	GTATCC	1 cut(s)	715
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	3 cut(s)	366, 560, 633
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	3 cut(s)	239, 622, 702
CaiI	CAGNNNCTG	1 cut(s)	237
CfoI	GCGC	1 cut(s)	700
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	3 cut(s)	445, 589, 726
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	2 cut(s)	245, 359
DpnI	GATC	7 cut(s)	28, 214, 250, 318, 345, 615, 674
DpnII	GATC	7 cut(s)	26, 212, 248, 316, 343, 613, 672
Eco130I	CCWWGG	1 cut(s)	444
Eco32I	GATATC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	93
Eco91I	GGTNACC	1 cut(s)	592
EcoO65I	GGTNACC	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	3 cut(s)	448, 592, 729
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	3 cut(s)	444, 588, 725
FbaI	TGATCA	1 cut(s)	672
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	6 cut(s)	22, 232, 235, 242, 297, 498
FokI	GGATG	3 cut(s)	353, 567, 640
Fsp4HI	GCNGC	6 cut(s)	22, 232, 235, 242, 297, 498
FspBI	CTAG	1 cut(s)	665
GlaI	GCGC	1 cut(s)	699
GluI	GCNGC	6 cut(s)	22, 232, 235, 242, 297, 498
HapII	CCGG	1 cut(s)	370
HhaI	GCGC	1 cut(s)	700
Hin1II	CATG	3 cut(s)	448, 592, 729
Hin6I	GCGC	1 cut(s)	698
HinP1I	GCGC	1 cut(s)	698
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	4 cut(s)	47, 113, 311, 581
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	3 cut(s)	249, 586, 590
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	3 cut(s)	112, 248, 316
Hpy188III	TCNNGA	4 cut(s)	170, 204, 347, 552
Hpy8I	GTNNAC	1 cut(s)	89
Hpy99I	CGWCG	1 cut(s)	438
HpyAV	CCTTC	3 cut(s)	151, 192, 235
HpyCH4III	ACNGT	2 cut(s)	102, 277
HpyCH4V	TGCA	8 cut(s)	21, 67, 74, 508, 527, 547, 588, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 293, 514
HpyF3I	CTNAG	2 cut(s)	245, 359
Hsp92II	CATG	3 cut(s)	448, 592, 729
HspAI	GCGC	1 cut(s)	698
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	7 cut(s)	26, 212, 248, 316, 343, 613, 672
Lsp1109I	GCAGC	5 cut(s)	33, 228, 243, 283, 484
LweI	GCATC	3 cut(s)	283, 372, 618
MaeI	CTAG	1 cut(s)	665
MaeIII	GTNAC	3 cut(s)	96, 578, 592
MalI	GATC	7 cut(s)	28, 214, 250, 318, 345, 615, 674
MboI	GATC	7 cut(s)	26, 212, 248, 316, 343, 613, 672
MboII	GAAGA	1 cut(s)	461
MfeI	CAATTG	1 cut(s)	711
MflI	RGATCY	2 cut(s)	343, 613
MluCI	AATT	5 cut(s)	266, 388, 416, 692, 711
MlyI	GAGTC	3 cut(s)	41, 107, 575
MmeI	TCCRAC	2 cut(s)	141, 591
MnlI	CCTC	3 cut(s)	37, 368, 561
MseI	TTAA	5 cut(s)	54, 135, 645, 654, 687
MslI	CAYNNNNRTG	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	237
MspCI	CTTAAG	1 cut(s)	686
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	31
MunI	CAATTG	1 cut(s)	711
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	150, 293, 514
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	7 cut(s)	26, 212, 248, 316, 343, 613, 672
NlaIII	CATG	3 cut(s)	448, 592, 729
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	2 cut(s)	578, 592
OliI	CACNNNNGTG	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	311
PflMI	CCANNNNNTGG	2 cut(s)	306, 716
PkrI	GCNGC	6 cut(s)	23, 233, 236, 243, 298, 499
PleI	GAGTC	3 cut(s)	41, 107, 575
PpsI	GAGTC	3 cut(s)	41, 107, 575
PshBI	ATTAAT	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	29
PspEI	GGTNACC	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	615
PstI	CTGCAG	2 cut(s)	23, 622
PstNI	CAGNNNCTG	1 cut(s)	237
PsuI	RGATCY	2 cut(s)	343, 613
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	5 cut(s)	54, 135, 645, 654, 687
SatI	GCNGC	6 cut(s)	22, 232, 235, 242, 297, 498
Sau3AI	GATC	7 cut(s)	26, 212, 248, 316, 343, 613, 672
SbfI	CCTGCAGG	1 cut(s)	622
SchI	GAGTC	3 cut(s)	41, 107, 575
ScrFI	CCNGG	1 cut(s)	31
SdaI	CCTGCAGG	1 cut(s)	622
SetI	ASST	9 cut(s)	86, 162, 203, 227, 335, 360, 499, 599, 706
SfaNI	GCATC	3 cut(s)	283, 372, 618
SfcI	CTRYAG	2 cut(s)	19, 618
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	2 cut(s)	374, 686
SmoI	CTYRAG	2 cut(s)	374, 686
SpeI	ACTAGT	1 cut(s)	664
Sse8387I	CCTGCAGG	1 cut(s)	622
Sse9I	AATT	5 cut(s)	266, 388, 416, 692, 711
SsiI	CCGC	2 cut(s)	229, 235
SspMI	CTAG	1 cut(s)	665
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	2 cut(s)	102, 277
TaqI	TCGA	2 cut(s)	191, 649
TasI	AATT	5 cut(s)	266, 388, 416, 692, 711
TauI	GCSGC	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	5 cut(s)	54, 135, 645, 654, 687
Tru9I	TTAA	5 cut(s)	54, 135, 645, 654, 687
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	2 cut(s)	578, 592
TseI	GCWGC	5 cut(s)	21, 231, 241, 296, 497
Tsp45I	GTSAC	2 cut(s)	578, 592
TspRI	CASTG	1 cut(s)	280
Van91I	CCANNNNNTGG	2 cut(s)	306, 716
Vha464I	CTTAAG	1 cut(s)	686
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	88
XspI	CTAG	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.