WD and tetratricopeptide repeats protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G10940 AT5G10940 |
| fragaria_vesca | FvH4_5g35830 FvH4_5g35830 FvH4_5g35830 |
| malus_domestica | MD08G1192800.v1.1 MD15G1381500.v1.1 |
| prunus_persica | Prupe.1G527400_v2.0.a1 Prupe.1G527400_v2.0.a1 Prupe.1G527400_v2.0.a1 Prupe.1G527400_v2.0.a1 |
| pyrus_communis | pycom08g16630 pycom15g34170 |
| rosa_chinensis | RchiOBHm_Chr7g0237521 |
| rosa_laevigata | RLG00000000996 |
| rosa_multiflora | Rmu_ssc0000152.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00224060 |
| rosa_rugosa | Rorug07G0303800 Rorug07G0303900 |
| rosa_samantha | Rh7AG461500 Rh7BG431700 Rh7CG478700 Rh7DG447900 |
| rosa_wichuraiana | Rw7G038190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 994 |
| AccB1I | GGYRCC | 1 cut(s) | 1049 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 874 |
| AccBSI | CCGCTC | 1 cut(s) | 831 |
| AciI | CCGC | 5 cut(s) | 831, 1281, 2311, 2772, 2861 |
| AcsI | RAATTY | 5 cut(s) | 223, 273, 433, 1108, 1746 |
| AfaI | GTAC | 2 cut(s) | 1150, 1200 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 137, 398, 874, 1331, 1468, 1855 |
| AflII | CTTAAG | 1 cut(s) | 2150 |
| AflIII | ACRYGT | 4 cut(s) | 658, 750, 793, 2657 |
| AjiI | CACGTC | 1 cut(s) | 2658 |
| AjnI | CCWGG | 2 cut(s) | 553, 2589 |
| Alw21I | GWGCWC | 4 cut(s) | 666, 1354, 1887, 1999 |
| Alw26I | GTCTC | 7 cut(s) | 62, 105, 205, 432, 2194, 2345, 2383 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 539, 1278, 1706, 2119 |
| AoxI | GGCC | 7 cut(s) | 298, 613, 761, 832, 1782, 2684, 2817 |
| ApeKI | GCWGC | 7 cut(s) | 369, 690, 989, 1700, 1703, 2222, 2728 |
| ApoI | RAATTY | 5 cut(s) | 223, 273, 433, 1108, 1746 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1658, 1690 |
| AseI | ATTAAT | 2 cut(s) | 950, 2604 |
| AspLEI | GCGC | 1 cut(s) | 1067 |
| AsuHPI | GGTGA | 4 cut(s) | 560, 1456, 1631, 2120 |
| AsuII | TTCGAA | 1 cut(s) | 669 |
| AvaII | GGWCC | 6 cut(s) | 308, 380, 402, 524, 1024, 1601 |
| AxyI | CCTNAGG | 1 cut(s) | 1028 |
| BaeGI | GKGCMC | 2 cut(s) | 1270, 1337 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1132, 1165 |
| BamHI | GGATCC | 2 cut(s) | 148, 2413 |
| BanI | GGYRCC | 1 cut(s) | 1049 |
| BanII | GRGCYC | 3 cut(s) | 1354, 1887, 1999 |
| Bbv12I | GWGCWC | 4 cut(s) | 666, 1354, 1887, 1999 |
| BbvI | GCAGC | 7 cut(s) | 381, 702, 976, 1712, 1715, 2234, 2740 |
| BciT130I | CCWGG | 2 cut(s) | 555, 2591 |
| BciVI | GTATCC | 2 cut(s) | 1133, 2399 |
| BclI | TGATCA | 1 cut(s) | 1789 |
| BcoDI | GTCTC | 7 cut(s) | 62, 105, 205, 432, 2194, 2345, 2383 |
| BfaI | CTAG | 6 cut(s) | 503, 932, 1499, 1548, 1863, 2226 |
| BfmI | CTRYAG | 3 cut(s) | 396, 407, 1072 |
| BfoI | RGCGCY | 1 cut(s) | 1068 |
| BfrI | CTTAAG | 1 cut(s) | 2150 |
| BfuAI | ACCTGC | 1 cut(s) | 994 |
| BfuI | GTATCC | 2 cut(s) | 1133, 2399 |
| BisI | GCNGC | 9 cut(s) | 370, 691, 832, 990, 1701, 1704, 2223, 2729, 2861 |
| BlpI | GCTNAGC | 2 cut(s) | 827, 2233 |
| BlsI | GCNGC | 9 cut(s) | 371, 692, 833, 991, 1702, 1705, 2224, 2730, 2862 |
| BmcAI | AGTACT | 1 cut(s) | 1200 |
| Bme1390I | CCNGG | 2 cut(s) | 555, 2591 |
| Bme18I | GGWCC | 6 cut(s) | 308, 380, 402, 524, 1024, 1601 |
| BmgBI | CACGTC | 1 cut(s) | 2658 |
| BmrFI | CCNGG | 2 cut(s) | 555, 2591 |
| BmrI | ACTGGG | 3 cut(s) | 527, 768, 1266 |
| BmsI | GCATC | 5 cut(s) | 702, 2106, 2771, 2776, 2809 |
| BmuI | ACTGGG | 3 cut(s) | 527, 768, 1266 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1022 |
| BpmI | CTGGAG | 2 cut(s) | 264, 1209 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 827, 2233 |
| Bpu14I | TTCGAA | 1 cut(s) | 669 |
| BpuEI | CTTGAG | 2 cut(s) | 1415, 2370 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1985 |
| BsaI | GGTCTC | 2 cut(s) | 205, 2345 |
| BsaJI | CCNNGG | 8 cut(s) | 706, 917, 1053, 1467, 1954, 2014, 2104, 2352 |
| BsaWI | WCCGGW | 1 cut(s) | 16 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1182, 1212 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 137, 398, 874, 1331, 1468, 1855 |
| Bse21I | CCTNAGG | 1 cut(s) | 1028 |
| Bse3DI | GCAATG | 4 cut(s) | 574, 2556, 2658, 2818 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1985 |
| BseBI | CCWGG | 2 cut(s) | 555, 2591 |
| BseDI | CCNNGG | 8 cut(s) | 706, 917, 1053, 1467, 1954, 2014, 2104, 2352 |
| BseJI | GATNNNNATC | 1 cut(s) | 1985 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 137, 398, 874, 1331, 1468, 1855 |
| BseMI | GCAATG | 4 cut(s) | 574, 2556, 2658, 2818 |
| BseRI | GAGGAG | 2 cut(s) | 1780, 2212 |
| BseSI | GKGCMC | 2 cut(s) | 1270, 1337 |
| BseXI | GCAGC | 7 cut(s) | 381, 702, 976, 1712, 1715, 2234, 2740 |
| BseYI | CCCAGC | 1 cut(s) | 2433 |
| BsgI | GTGCAG | 1 cut(s) | 2241 |
| BshFI | GGCC | 7 cut(s) | 300, 615, 763, 834, 1784, 2686, 2819 |
| BshNI | GGYRCC | 1 cut(s) | 1049 |
| BsiHKAI | GWGCWC | 4 cut(s) | 666, 1354, 1887, 1999 |
| BsiSI | CCGG | 1 cut(s) | 17 |
| BslFI | GGGAC | 6 cut(s) | 366, 388, 1223, 1260, 1408, 2158 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 137, 398, 874, 1331, 1468, 1855 |
| BsmAI | GTCTC | 7 cut(s) | 62, 105, 205, 432, 2194, 2345, 2383 |
| BsmFI | GGGAC | 6 cut(s) | 366, 388, 1223, 1260, 1408, 2158 |
| BsmI | GAATGC | 1 cut(s) | 2323 |
| BsnI | GGCC | 7 cut(s) | 300, 615, 763, 834, 1784, 2686, 2819 |
| Bso31I | GGTCTC | 2 cut(s) | 205, 2345 |
| Bsp119I | TTCGAA | 1 cut(s) | 669 |
| Bsp1286I | GDGCHC | 6 cut(s) | 666, 1270, 1337, 1354, 1887, 1999 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 827, 2233 |
| Bsp19I | CCATGG | 2 cut(s) | 917, 2352 |
| BspACI | CCGC | 5 cut(s) | 831, 1281, 2311, 2772, 2861 |
| BspANI | GGCC | 7 cut(s) | 300, 615, 763, 834, 1784, 2686, 2819 |
| BspHI | TCATGA | 2 cut(s) | 1887, 2245 |
| BspMI | ACCTGC | 1 cut(s) | 994 |
| BspQI | GCTCTTC | 2 cut(s) | 671, 1875 |
| BspT104I | TTCGAA | 1 cut(s) | 669 |
| BspT107I | GGYRCC | 1 cut(s) | 1049 |
| BspTI | CTTAAG | 1 cut(s) | 2150 |
| BspTNI | GGTCTC | 2 cut(s) | 205, 2345 |
| BsrBI | CCGCTC | 1 cut(s) | 831 |
| BsrDI | GCAATG | 4 cut(s) | 574, 2556, 2658, 2818 |
| BssECI | CCNNGG | 8 cut(s) | 706, 917, 1053, 1467, 1954, 2014, 2104, 2352 |
| BssT1I | CCWWGG | 6 cut(s) | 706, 917, 1053, 1467, 2014, 2352 |
| Bst2UI | CCWGG | 2 cut(s) | 555, 2591 |
| Bst4CI | ACNGT | 6 cut(s) | 258, 785, 1021, 1265, 1310, 1955 |
| Bst6I | CTCTTC | 3 cut(s) | 671, 1875, 2444 |
| BstAFI | CTTAAG | 1 cut(s) | 2150 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2219, 2327 |
| BstBI | TTCGAA | 1 cut(s) | 669 |
| BstC8I | GCNNGC | 5 cut(s) | 581, 1479, 2733, 2776, 2791 |
| BstDSI | CCRYGG | 3 cut(s) | 917, 1954, 2352 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 396, 1466 |
| BstH2I | RGCGCY | 1 cut(s) | 1068 |
| BstHHI | GCGC | 1 cut(s) | 1067 |
| BstMAI | GTCTC | 7 cut(s) | 62, 105, 205, 432, 2194, 2345, 2383 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1781, 2219, 2327, 2759 |
| BstNI | CCWGG | 2 cut(s) | 555, 2591 |
| BstNSI | RCATGY | 6 cut(s) | 193, 568, 662, 754, 797, 1481 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1022 |
| BstSCI | CCNGG | 2 cut(s) | 553, 2589 |
| BstSFI | CTRYAG | 3 cut(s) | 396, 407, 1072 |
| BstSLI | GKGCMC | 2 cut(s) | 1270, 1337 |
| BstV1I | GCAGC | 7 cut(s) | 381, 702, 976, 1712, 1715, 2234, 2740 |
| BstX2I | RGATCY | 6 cut(s) | 148, 280, 499, 1928, 2413, 2644 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1046, 2608 |
| BstYI | RGATCY | 6 cut(s) | 148, 280, 499, 1928, 2413, 2644 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1028 |
| BsuI | GTATCC | 2 cut(s) | 1133, 2399 |
| BsuRI | GGCC | 7 cut(s) | 300, 615, 763, 834, 1784, 2686, 2819 |
| BtgI | CCRYGG | 3 cut(s) | 917, 1954, 2352 |
| BtgZI | GCGATG | 1 cut(s) | 1236 |
| BtrI | CACGTC | 1 cut(s) | 2658 |
| BtsIMutI | CAGTG | 2 cut(s) | 1785, 2054 |
| BveI | ACCTGC | 1 cut(s) | 994 |
| Cac8I | GCNNGC | 5 cut(s) | 581, 1479, 2733, 2776, 2791 |
| CaiI | CAGNNNCTG | 4 cut(s) | 539, 1278, 1706, 2119 |
| CciI | TCATGA | 2 cut(s) | 1887, 2245 |
| CfoI | GCGC | 1 cut(s) | 1067 |
| CseI | GACGC | 2 cut(s) | 1182, 1426 |
| CsiI | ACCWGGT | 1 cut(s) | 553 |
| Csp6I | GTAC | 2 cut(s) | 1149, 1199 |
| CviQI | GTAC | 2 cut(s) | 1149, 1199 |
| DraI | TTTAAA | 2 cut(s) | 96, 207 |
| Eam1104I | CTCTTC | 3 cut(s) | 671, 1875, 2444 |
| EarI | CTCTTC | 3 cut(s) | 671, 1875, 2444 |
| Ecl136II | GAGCTC | 3 cut(s) | 1352, 1885, 1997 |
| Eco130I | CCWWGG | 6 cut(s) | 706, 917, 1053, 1467, 2014, 2352 |
| Eco147I | AGGCCT | 3 cut(s) | 300, 2686, 2819 |
| Eco24I | GRGCYC | 3 cut(s) | 1354, 1887, 1999 |
| Eco31I | GGTCTC | 2 cut(s) | 205, 2345 |
| Eco47I | GGWCC | 6 cut(s) | 308, 380, 402, 524, 1024, 1601 |
| Eco53kI | GAGCTC | 3 cut(s) | 1352, 1885, 1997 |
| Eco81I | CCTNAGG | 1 cut(s) | 1028 |
| EcoICRI | GAGCTC | 3 cut(s) | 1352, 1885, 1997 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 396, 1466 |
| EcoO109I | RGGNCCY | 2 cut(s) | 402, 524 |
| EcoRI | GAATTC | 1 cut(s) | 433 |
| EcoRII | CCWGG | 2 cut(s) | 553, 2589 |
| EcoT14I | CCWWGG | 6 cut(s) | 706, 917, 1053, 1467, 2014, 2352 |
| EcoT22I | ATGCAT | 1 cut(s) | 1483 |
| EcoT38I | GRGCYC | 3 cut(s) | 1354, 1887, 1999 |
| ErhI | CCWWGG | 6 cut(s) | 706, 917, 1053, 1467, 2014, 2352 |
| FaqI | GGGAC | 6 cut(s) | 366, 388, 1223, 1260, 1408, 2158 |
| FauNDI | CATATG | 1 cut(s) | 1327 |
| FbaI | TGATCA | 1 cut(s) | 1789 |
| Fnu4HI | GCNGC | 9 cut(s) | 370, 691, 832, 990, 1701, 1704, 2223, 2729, 2861 |
| FriOI | GRGCYC | 3 cut(s) | 1354, 1887, 1999 |
| Fsp4HI | GCNGC | 9 cut(s) | 370, 691, 832, 990, 1701, 1704, 2223, 2729, 2861 |
| FspBI | CTAG | 6 cut(s) | 503, 932, 1499, 1548, 1863, 2226 |
| GlaI | GCGC | 1 cut(s) | 1066 |
| GluI | GCNGC | 9 cut(s) | 370, 691, 832, 990, 1701, 1704, 2223, 2729, 2861 |
| GsaI | CCCAGC | 1 cut(s) | 2437 |
| GsuI | CTGGAG | 2 cut(s) | 264, 1209 |
| HaeII | RGCGCY | 1 cut(s) | 1068 |
| HaeIII | GGCC | 7 cut(s) | 300, 615, 763, 834, 1784, 2686, 2819 |
| HapII | CCGG | 1 cut(s) | 17 |
| HgaI | GACGC | 2 cut(s) | 1182, 1426 |
| HhaI | GCGC | 1 cut(s) | 1067 |
| Hin6I | GCGC | 1 cut(s) | 1065 |
| HinP1I | GCGC | 1 cut(s) | 1065 |
| HincII | GTYRAC | 1 cut(s) | 756 |
| HindII | GTYRAC | 1 cut(s) | 756 |
| HindIII | AAGCTT | 1 cut(s) | 629 |
| HpaI | GTTAAC | 1 cut(s) | 756 |
| HpaII | CCGG | 1 cut(s) | 17 |
| HphI | GGTGA | 4 cut(s) | 560, 1456, 1631, 2120 |
| Hpy166II | GTNNAC | 3 cut(s) | 551, 756, 1951 |
| Hpy8I | GTNNAC | 3 cut(s) | 551, 756, 1951 |
| Hpy99I | CGWCG | 1 cut(s) | 1442 |
| HpyCH4III | ACNGT | 6 cut(s) | 258, 785, 1021, 1265, 1310, 1955 |
| HpyCH4IV | ACGT | 2 cut(s) | 719, 2657 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1781, 2219, 2327, 2759 |
| HpySE526I | ACGT | 2 cut(s) | 719, 2657 |
| HspAI | GCGC | 1 cut(s) | 1065 |
| KflI | GGGWCCC | 1 cut(s) | 402 |
| Ksp22I | TGATCA | 1 cut(s) | 1789 |
| KspAI | GTTAAC | 1 cut(s) | 756 |
| LguI | GCTCTTC | 2 cut(s) | 671, 1875 |
| LmnI | GCTCC | 7 cut(s) | 412, 844, 1190, 1357, 1697, 2485, 2675 |
| Lsp1109I | GCAGC | 7 cut(s) | 381, 702, 976, 1712, 1715, 2234, 2740 |
| LweI | GCATC | 5 cut(s) | 702, 2106, 2771, 2776, 2809 |
| MabI | ACCWGGT | 1 cut(s) | 553 |
| MaeI | CTAG | 6 cut(s) | 503, 932, 1499, 1548, 1863, 2226 |
| MaeII | ACGT | 2 cut(s) | 719, 2657 |
| MaeIII | GTNAC | 5 cut(s) | 85, 715, 1205, 1457, 1568 |
| MbiI | CCGCTC | 1 cut(s) | 831 |
| MfeI | CAATTG | 2 cut(s) | 1082, 2214 |
| MflI | RGATCY | 6 cut(s) | 148, 280, 499, 1928, 2413, 2644 |
| MhlI | GDGCHC | 6 cut(s) | 666, 1270, 1337, 1354, 1887, 1999 |
| MlyI | GAGTC | 3 cut(s) | 944, 2140, 2765 |
| MmeI | TCCRAC | 3 cut(s) | 1906, 2283, 2463 |
| Mph1103I | ATGCAT | 1 cut(s) | 1483 |
| MslI | CAYNNNNRTG | 1 cut(s) | 194 |
| MspA1I | CMGCKG | 2 cut(s) | 805, 1706 |
| MspCI | CTTAAG | 1 cut(s) | 2150 |
| MspI | CCGG | 1 cut(s) | 17 |
| MspR9I | CCNGG | 2 cut(s) | 555, 2591 |
| MunI | CAATTG | 2 cut(s) | 1082, 2214 |
| Mva1269I | GAATGC | 1 cut(s) | 2323 |
| MvaI | CCWGG | 2 cut(s) | 555, 2591 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1781, 2219, 2327, 2759 |
| NcoI | CCATGG | 2 cut(s) | 917, 2352 |
| NdeI | CATATG | 1 cut(s) | 1327 |
| NsiI | ATGCAT | 1 cut(s) | 1483 |
| NspI | RCATGY | 6 cut(s) | 193, 568, 662, 754, 797, 1481 |
| NspV | TTCGAA | 1 cut(s) | 669 |
| PaeI | GCATGC | 1 cut(s) | 1481 |
| PagI | TCATGA | 2 cut(s) | 1887, 2245 |
| PceI | AGGCCT | 3 cut(s) | 300, 2686, 2819 |
| PciI | ACATGT | 3 cut(s) | 658, 750, 793 |
| PciSI | GCTCTTC | 2 cut(s) | 671, 1875 |
| PctI | GAATGC | 1 cut(s) | 2323 |
| PfeI | GAWTC | 9 cut(s) | 142, 1402, 1412, 1442, 1472, 1661, 2006, 2178, 2594 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 874 |
| PfoI | TCCNGGA | 1 cut(s) | 2589 |
| PkrI | GCNGC | 9 cut(s) | 371, 692, 833, 991, 1702, 1705, 2224, 2730, 2862 |
| PleI | GAGTC | 3 cut(s) | 943, 2140, 2764 |
| PpsI | GAGTC | 3 cut(s) | 943, 2140, 2764 |
| PpuMI | RGGWCCY | 2 cut(s) | 402, 524 |
| PscI | ACATGT | 3 cut(s) | 658, 750, 793 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1022 |
| PshBI | ATTAAT | 2 cut(s) | 950, 2604 |
| Psp124BI | GAGCTC | 3 cut(s) | 1354, 1887, 1999 |
| Psp5II | RGGWCCY | 2 cut(s) | 402, 524 |
| Psp6I | CCWGG | 2 cut(s) | 553, 2589 |
| PspFI | CCCAGC | 1 cut(s) | 2433 |
| PspGI | CCWGG | 2 cut(s) | 553, 2589 |
| PspPPI | RGGWCCY | 2 cut(s) | 402, 524 |
| PstNI | CAGNNNCTG | 4 cut(s) | 539, 1278, 1706, 2119 |
| PsuI | RGATCY | 6 cut(s) | 148, 280, 499, 1928, 2413, 2644 |
| PvuII | CAGCTG | 2 cut(s) | 805, 1706 |
| RsaI | GTAC | 2 cut(s) | 1150, 1200 |
| RsaNI | GTAC | 2 cut(s) | 1149, 1199 |
| RseI | CAYNNNNRTG | 1 cut(s) | 194 |
| SacI | GAGCTC | 3 cut(s) | 1354, 1887, 1999 |
| SapI | GCTCTTC | 2 cut(s) | 671, 1875 |
| SatI | GCNGC | 9 cut(s) | 370, 691, 832, 990, 1701, 1704, 2223, 2729, 2861 |
| ScaI | AGTACT | 1 cut(s) | 1200 |
| SchI | GAGTC | 3 cut(s) | 944, 2140, 2765 |
| ScrFI | CCNGG | 2 cut(s) | 555, 2591 |
| SduI | GDGCHC | 6 cut(s) | 666, 1270, 1337, 1354, 1887, 1999 |
| SexAI | ACCWGGT | 1 cut(s) | 553 |
| SfaNI | GCATC | 5 cut(s) | 702, 2106, 2771, 2776, 2809 |
| SfcI | CTRYAG | 3 cut(s) | 396, 407, 1072 |
| SfuI | TTCGAA | 1 cut(s) | 669 |
| SinI | GGWCC | 6 cut(s) | 308, 380, 402, 524, 1024, 1601 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 194 |
| SmlI | CTYRAG | 3 cut(s) | 1394, 2150, 2385 |
| SmoI | CTYRAG | 3 cut(s) | 1394, 2150, 2385 |
| SphI | GCATGC | 1 cut(s) | 1481 |
| SseBI | AGGCCT | 3 cut(s) | 300, 2686, 2819 |
| SsiI | CCGC | 5 cut(s) | 831, 1281, 2311, 2772, 2861 |
| SspI | AATATT | 3 cut(s) | 420, 1731, 2423 |
| SspMI | CTAG | 6 cut(s) | 503, 932, 1499, 1548, 1863, 2226 |
| SstI | GAGCTC | 3 cut(s) | 1354, 1887, 1999 |
| StuI | AGGCCT | 3 cut(s) | 300, 2686, 2819 |
| StyD4I | CCNGG | 2 cut(s) | 553, 2589 |
| StyI | CCWWGG | 6 cut(s) | 706, 917, 1053, 1467, 2014, 2352 |
| TaaI | ACNGT | 6 cut(s) | 258, 785, 1021, 1265, 1310, 1955 |
| TaiI | ACGT | 2 cut(s) | 722, 2660 |
| TaqI | TCGA | 2 cut(s) | 669, 1440 |
| TaqII | GACCGA | 1 cut(s) | 2118 |
| TatI | WGTACW | 1 cut(s) | 1198 |
| TauI | GCSGC | 2 cut(s) | 834, 2863 |
| TfiI | GAWTC | 9 cut(s) | 142, 1402, 1412, 1442, 1472, 1661, 2006, 2178, 2594 |
| TscAI | CASTG | 2 cut(s) | 1792, 2061 |
| TseI | GCWGC | 7 cut(s) | 369, 690, 989, 1700, 1703, 2222, 2728 |
| TspGWI | ACGGA | 1 cut(s) | 1133 |
| TspRI | CASTG | 2 cut(s) | 1792, 2061 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 874 |
| Vha464I | CTTAAG | 1 cut(s) | 2150 |
| VpaK11BI | GGWCC | 6 cut(s) | 308, 380, 402, 524, 1024, 1601 |
| VspI | ATTAAT | 2 cut(s) | 950, 2604 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 396, 1466 |
| XapI | RAATTY | 5 cut(s) | 223, 273, 433, 1108, 1746 |
| XbaI | TCTAGA | 1 cut(s) | 1547 |
| XceI | RCATGY | 6 cut(s) | 193, 568, 662, 754, 797, 1481 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 952 |
| XspI | CTAG | 6 cut(s) | 503, 932, 1499, 1548, 1863, 2226 |
| ZrmI | AGTACT | 1 cut(s) | 1200 |
| Zsp2I | ATGCAT | 1 cut(s) | 1483 |