Rmu_ssc0000243.1_g000018

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000243.1
OG0016277
Physical Location & Seq
Forward (+)
63434 .. 65431
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1998 bp
atgtcatcctttgctttccgtccccgtctttggaagcttcccgccatagttcaaaccgtaagacagttgaatgcttctgctcaggtggagccaaacttgaattcgattgaagccggtcgtcgtcatcgtcaaaagccaaacctgagtctttggtggtataaaagtgatacatatagctgtaactgtgagattataaatctcgggcgctgtggcaaagtgaaagatgcaaggaagctgttcgacgatatgcctcaacgagatgctgtctcttatgcgtccatgatcaatatttacttgaagaacgatgatcttcccaatgcacagaggctctttcaggccatgcccgccagtaatattgttgctgaatctgcaatggttagtggttatgtcaaggcaggccgtatagctgaggctcgtcaagtttttgatcgcatggagaacagaaatgtgtattcttggaccagtttgatatccgggtatctcagttgcggacaagttgacgaggcccgtcggctttttggtcgtatgcctgtcaaaaatgtggtgtcctggactactatgatcctgggttacgctcgcaacaacatgattgatgaagcgcgccgtgtgtttaaccttatgcctgaaagaaacacagtctcatggacagttatgatcaaggctcttattgagaatgatcaatttgatgacgcacttagcctcttcaatgatatgccacaacggaacctatattcttggaacatcataatcttgggtcttcttaatgcaaatagagtaagtgaagccatcaaactcttcagttcaatgcctcagaggaatgcaatttcttggactactatggttacggggttggcacataacaagatgactaaacttgcaagagagtactttgatcgaatgcctaacaaagatgtagctgcctggaatgctatgattgcatcatatgttgatgaaggcctcatggcagaagccggtgagctattcagtttcatgcacgaaaggaatgttgttacttggaatctgatgattgatggttatactaaaagtgggccaaaagaacaagccttaaagcacctaattctgatgcttcggttttgctttagacctaataggactaccatcgctagcatattgagctcatgcgaggacatgatggagctaatgcaagctcatgcactggtcctatcacatgggtatgagcatgacacagtcgttgtgaatacactagtcactatgtattccagaaatggggatgttacttctgctaggtttgtttttgatcatcttggggctaaggatgtggcatcatggaatgcaatgatattagcatattcaaatcatggatatggtcaccatgcattgcaggtcttcgcacacatgttaagatcaggagccaagccagatgaaattacttttgttggagtcttatcagcttgtagtcatgctggtcttgtcaacaaaggtcaaaggcttttcaattcaatgaaccatgtttatgatatagaaccaaaggcccagcactattcctgccttgtggacatcttaggccgagcaggactagtggatgaggctacgaaggtagtacgcatgatgcctgcttctgagaaggatgctgctgttctaggagcattgcttggtgcttataggttccatggaaatattacaatggcaagtcttattggagaggcacttcaagagctagagccaggtagctctggggggtatgtactcttagctataatttatgctgcacgtggaaaatgggatgaatttgctcgagtaagaaaaaagatgaaggagaggaatgtgaataaggttcctggttttagtcaaatacaagtgaagggcaggagtcatgtattttttgtgggggacaaatctcatcctcaagctgctgagatttggggactgcttcaagagaagctcctaccacacatgtgggagatgggatactcaaaacggaatgcatctcagattgatcaccagaagaggaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

665

Amino Acids

75.22

Weight (kDa)

9.23

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 151 - 180 4.4e-07 PPR repeat
PPR_2 PF13041 179 - 211 6.2e-07 PPR repeat family
PPR PF01535 182 - 211 3e-07 PPR repeat
PPR_2 PF13041 210 - 243 2.4e-07 PPR repeat family
PPR PF01535 213 - 242 9.8e-06 PPR repeat
PPR_2 PF13041 334 - 381 8e-06 PPR repeat family
PPR_long PF17177 411 - 535 1e-05 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 432 - 480 2.1e-10 PPR repeat family
E_motif PF20431 553 - 613 3.6e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016277)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00100
malus_domestica MD05G1364000.v1.1
prunus_persica Prupe.4G001100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0000131
rosa_laevigata RLG00000030844
rosa_multiflora Rmu_co8477805.1_g000001 Rmu_sc0003125.1_g000003 Rmu_ssc0000243.1_g000018
rosa_roxburghii Rroxscaffold_1G00075970
rosa_rugosa Rorug04G0381800
rosa_samantha Rh5AG000900 Rh5BG002100 Rh5CG001000 Rh5DG000900
rosa_wichuraiana Rw5G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 1354
AccII CGCG 1 cut(s) 601
AciI CCGC 3 cut(s) 42, 345, 489
AclWI GGATC 1 cut(s) 556
AcsI RAATTY 2 cut(s) 100, 1769
AcuI CTGAAG 1 cut(s) 781
AcvI CACGTG 1 cut(s) 1754
AfaI GTAC 3 cut(s) 887, 1584, 1728
AfiI CCNNNNNNNGG 2 cut(s) 30, 1248
AflIII ACRYGT 2 cut(s) 1377, 1935
AhlI ACTAGT 2 cut(s) 1225, 1558
AjnI CCWGG 5 cut(s) 548, 564, 920, 1705, 1819
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AleI CACNNNNGTG 1 cut(s) 1936
Alw21I GWGCWC 1 cut(s) 1139
Alw26I GTCTC 2 cut(s) 271, 643
AlwI GGATC 1 cut(s) 556
Ama87I CYCGRG 2 cut(s) 200, 1776
AoxI GGCC 7 cut(s) 336, 397, 504, 955, 1049, 1512, 1546
ApeKI GCWGC 4 cut(s) 917, 1613, 1748, 1892
ApoI RAATTY 2 cut(s) 100, 1769
Asp700I GAANNNNTTC 1 cut(s) 236
AspLEI GCGC 3 cut(s) 207, 601, 603
AspS9I GGNCC 5 cut(s) 459, 505, 1049, 1180, 1513
AsuC2I CCSGG 1 cut(s) 475
AsuHPI GGTGA 3 cut(s) 986, 1343, 1973
AsuNHI GCTAGC 1 cut(s) 1124
AvaI CYCGRG 2 cut(s) 200, 1776
AvaII GGWCC 2 cut(s) 459, 1180
BanII GRGCYC 1 cut(s) 1139
BbrPI CACGTG 1 cut(s) 1754
BbsI GAAGAC 2 cut(s) 749, 1360
Bbv12I GWGCWC 1 cut(s) 1139
BbvCI CCTCAGC 1 cut(s) 408
BbvI GCAGC 4 cut(s) 904, 1600, 1735, 1879
BccI CCATC 5 cut(s) 794, 1025, 1127, 1147, 1939
BceAI ACGGC 2 cut(s) 384, 588
BciT130I CCWGG 5 cut(s) 550, 566, 922, 1707, 1821
BciVI GTATCC 1 cut(s) 1943
BclI TGATCA 5 cut(s) 282, 654, 676, 1279, 1978
BcnI CCSGG 1 cut(s) 475
BcoDI GTCTC 2 cut(s) 271, 643
BcuI ACTAGT 2 cut(s) 1225, 1558
BfaI CTAG 6 cut(s) 1125, 1226, 1266, 1559, 1622, 1700
BfoI RGCGCY 1 cut(s) 208
BfuAI ACCTGC 1 cut(s) 1354
BfuI GTATCC 1 cut(s) 1943
BisI GCNGC 4 cut(s) 918, 1614, 1749, 1893
BlsI GCNGC 4 cut(s) 919, 1615, 1750, 1894
BmcAI AGTACT 1 cut(s) 887
Bme1390I CCNGG 6 cut(s) 475, 550, 566, 922, 1707, 1821
Bme18I GGWCC 2 cut(s) 459, 1180
BmeT110I CYCGRG 2 cut(s) 200, 1776
BmgT120I GGNCC 5 cut(s) 459, 505, 1049, 1180, 1513
BmiI GGNNCC 5 cut(s) 90, 725, 1393, 1649, 1818
BmrFI CCNGG 6 cut(s) 475, 550, 566, 922, 1707, 1821
BmsI GCATC 8 cut(s) 214, 250, 947, 1074, 1313, 1581, 1600, 1976
BmtI GCTAGC 1 cut(s) 1128
BpiI GAAGAC 2 cut(s) 749, 1360
Bpu10I CCTNAGC 3 cut(s) 81, 408, 1293
BpuEI CTTGAG 1 cut(s) 1872
BpuMI CCSGG 1 cut(s) 475
BsaAI YACGTR 1 cut(s) 1754
BsaJI CCNNGG 2 cut(s) 565, 1651
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 1248
Bse118I RCCGGY 2 cut(s) 113, 971
Bse1I ACTGG 3 cut(s) 348, 462, 1182
Bse3DI GCAATG 4 cut(s) 378, 1323, 1358, 1628
BseBI CCWGG 5 cut(s) 550, 566, 922, 1707, 1821
BseDI CCNNGG 2 cut(s) 565, 1651
BseGI GGATG 7 cut(s) 5, 1258, 1303, 1570, 1615, 1771, 1882
BseLI CCNNNNNNNGG 2 cut(s) 30, 1248
BseMI GCAATG 4 cut(s) 378, 1323, 1358, 1628
BseMII CTCAG 8 cut(s) 95, 134, 399, 496, 824, 1593, 1887, 1985
BseNI ACTGG 3 cut(s) 348, 462, 1182
BsePI GCGCGC 1 cut(s) 599
BseXI GCAGC 4 cut(s) 904, 1600, 1735, 1879
BseYI CCCAGC 1 cut(s) 1515
BsgI GTGCAG 1 cut(s) 1734
Bsh1236I CGCG 1 cut(s) 601
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 7 cut(s) 338, 399, 506, 957, 1051, 1514, 1548
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 1139
BsiHKCI CYCGRG 2 cut(s) 200, 1776
BsiSI CCGG 3 cut(s) 114, 474, 972
BslFI GGGAC 3 cut(s) 6, 1886, 1920
BslI CCNNNNNNNGG 2 cut(s) 30, 1248
BsmAI GTCTC 2 cut(s) 271, 643
BsmFI GGGAC 3 cut(s) 6, 1886, 1920
BsmI GAATGC 6 cut(s) 76, 823, 903, 931, 1318, 1969
BsnI GGCC 7 cut(s) 338, 399, 506, 957, 1051, 1514, 1548
BsoBI CYCGRG 2 cut(s) 200, 1776
Bsp1286I GDGCHC 1 cut(s) 1139
Bsp19I CCATGG 1 cut(s) 1651
BspACI CCGC 3 cut(s) 42, 345, 489
BspANI GGCC 7 cut(s) 338, 399, 506, 957, 1051, 1514, 1548
BspCNI CTCAG 8 cut(s) 94, 135, 400, 495, 823, 1594, 1888, 1984
BspFNI CGCG 1 cut(s) 601
BspLI GGNNCC 5 cut(s) 90, 725, 1393, 1649, 1818
BspMI ACCTGC 1 cut(s) 1354
BspOI GCTAGC 1 cut(s) 1128
BspPI GGATC 1 cut(s) 556
BsrDI GCAATG 4 cut(s) 378, 1323, 1358, 1628
BsrFI RCCGGY 2 cut(s) 113, 971
BsrI ACTGG 3 cut(s) 348, 462, 1182
BssAI RCCGGY 2 cut(s) 113, 971
BssECI CCNNGG 2 cut(s) 565, 1651
BssHII GCGCGC 1 cut(s) 599
BssT1I CCWWGG 1 cut(s) 1651
Bst2UI CCWGG 5 cut(s) 550, 566, 922, 1707, 1821
Bst4CI ACNGT 6 cut(s) 58, 66, 185, 637, 649, 1210
Bst6I CTCTTC 3 cut(s) 707, 800, 1982
BstBAI YACGTR 1 cut(s) 1754
BstC8I GCNNGC 7 cut(s) 345, 397, 577, 601, 1126, 1167, 1596
BstDSI CCRYGG 1 cut(s) 1651
BstEII GGTNACC 1 cut(s) 1349
BstF5I GGATG 7 cut(s) 5, 1258, 1303, 1570, 1615, 1771, 1882
BstFNI CGCG 1 cut(s) 601
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 3 cut(s) 207, 601, 603
BstMAI GTCTC 2 cut(s) 271, 643
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 5 cut(s) 344, 368, 926, 935, 1134
BstNI CCWGG 5 cut(s) 550, 566, 922, 1707, 1821
BstNSI RCATGY 2 cut(s) 1381, 1939
BstPI GGTNACC 1 cut(s) 1349
BstSCI CCNGG 6 cut(s) 473, 548, 564, 920, 1705, 1819
BstUI CGCG 1 cut(s) 601
BstV1I GCAGC 4 cut(s) 904, 1600, 1735, 1879
BstV2I GAAGAC 2 cut(s) 749, 1360
BstXI CCANNNNNNTGG 1 cut(s) 1938
BsuI GTATCC 1 cut(s) 1943
BsuRI GGCC 7 cut(s) 338, 399, 506, 957, 1051, 1514, 1548
BtgI CCRYGG 1 cut(s) 1651
BtgZI GCGATG 1 cut(s) 1105
BtsCI GGATG 7 cut(s) 5, 1258, 1303, 1570, 1615, 1771, 1882
BtsIMutI CAGTG 1 cut(s) 1175
BveI ACCTGC 1 cut(s) 1354
Cac8I GCNNGC 7 cut(s) 345, 397, 577, 601, 1126, 1167, 1596
CfoI GCGC 3 cut(s) 207, 601, 603
Cfr10I RCCGGY 2 cut(s) 113, 971
Cfr13I GGNCC 5 cut(s) 459, 505, 1049, 1180, 1513
CseI GACGC 2 cut(s) 264, 698
Csp6I GTAC 3 cut(s) 886, 1583, 1727
CviQI GTAC 3 cut(s) 886, 1583, 1727
Eam1104I CTCTTC 3 cut(s) 707, 800, 1982
EarI CTCTTC 3 cut(s) 707, 800, 1982
Ecl136II GAGCTC 1 cut(s) 1137
Eco130I CCWWGG 1 cut(s) 1651
Eco147I AGGCCT 1 cut(s) 957
Eco24I GRGCYC 1 cut(s) 1139
Eco32I GATATC 1 cut(s) 471
Eco47I GGWCC 2 cut(s) 459, 1180
Eco53kI GAGCTC 1 cut(s) 1137
Eco57I CTGAAG 1 cut(s) 781
Eco72I CACGTG 1 cut(s) 1754
Eco88I CYCGRG 2 cut(s) 200, 1776
Eco91I GGTNACC 1 cut(s) 1349
EcoICRI GAGCTC 1 cut(s) 1137
EcoO65I GGTNACC 1 cut(s) 1349
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 5 cut(s) 548, 564, 920, 1705, 1819
EcoRV GATATC 1 cut(s) 471
EcoT14I CCWWGG 1 cut(s) 1651
EcoT22I ATGCAT 2 cut(s) 1360, 1969
EcoT38I GRGCYC 1 cut(s) 1139
ErhI CCWWGG 1 cut(s) 1651
FaqI GGGAC 3 cut(s) 6, 1886, 1920
FauI CCCGC 2 cut(s) 49, 352
FauNDI CATATG 1 cut(s) 943
FbaI TGATCA 5 cut(s) 282, 654, 676, 1279, 1978
Fnu4HI GCNGC 4 cut(s) 918, 1614, 1749, 1893
FokI GGATG 6 cut(s) 1265, 1310, 1577, 1622, 1778, 1869
FriOI GRGCYC 1 cut(s) 1139
Fsp4HI GCNGC 4 cut(s) 918, 1614, 1749, 1893
FspBI CTAG 6 cut(s) 1125, 1226, 1266, 1559, 1622, 1700
GlaI GCGC 3 cut(s) 206, 600, 602
GluI GCNGC 4 cut(s) 918, 1614, 1749, 1893
GsaI CCCAGC 1 cut(s) 1519
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 7 cut(s) 338, 399, 506, 957, 1051, 1514, 1548
HapII CCGG 3 cut(s) 114, 474, 972
HgaI GACGC 2 cut(s) 264, 698
HhaI GCGC 3 cut(s) 207, 601, 603
Hin6I GCGC 3 cut(s) 205, 599, 601
HinP1I GCGC 3 cut(s) 205, 599, 601
HincII GTYRAC 2 cut(s) 499, 1456
HindII GTYRAC 2 cut(s) 499, 1456
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 5 cut(s) 145, 365, 1018, 1422, 1852
HpaII CCGG 3 cut(s) 114, 474, 972
HphI GGTGA 3 cut(s) 986, 1343, 1973
Hpy166II GTNNAC 3 cut(s) 499, 1456, 1537
Hpy188I TCNGA 5 cut(s) 813, 1023, 1083, 1603, 1974
Hpy188III TCNNGA 4 cut(s) 1242, 1389, 1694, 1916
Hpy8I GTNNAC 3 cut(s) 499, 1456, 1537
Hpy99I CGWCG 3 cut(s) 123, 245, 513
HpyAV CCTTC 5 cut(s) 947, 1570, 1600, 1789, 1837
HpyCH4III ACNGT 6 cut(s) 58, 66, 185, 637, 649, 1210
HpyCH4IV ACGT 1 cut(s) 1753
HpyF10VI GCNNNNNNNGC 5 cut(s) 344, 368, 926, 935, 1134
HpySE526I ACGT 1 cut(s) 1753
HspAI GCGC 3 cut(s) 205, 599, 601
Ksp22I TGATCA 5 cut(s) 282, 654, 676, 1279, 1978
LmnI GCTCC 5 cut(s) 88, 1156, 1391, 1625, 1929
Lsp1109I GCAGC 4 cut(s) 904, 1600, 1735, 1879
LweI GCATC 8 cut(s) 214, 250, 947, 1074, 1313, 1581, 1600, 1976
MaeI CTAG 6 cut(s) 1125, 1226, 1266, 1559, 1622, 1700
MaeII ACGT 1 cut(s) 1753
MaeIII GTNAC 7 cut(s) 179, 569, 841, 1009, 1228, 1255, 1349
MboII GAAGA 6 cut(s) 302, 310, 694, 749, 787, 1360
MhlI GDGCHC 1 cut(s) 1139
MluCI AATT 9 cut(s) 100, 680, 822, 1077, 1407, 1477, 1740, 1769, 1993
MlyI GAGTC 3 cut(s) 154, 1431, 1861
MmeI TCCRAC 1 cut(s) 1399
Mph1103I ATGCAT 2 cut(s) 1360, 1969
MroXI GAANNNNTTC 1 cut(s) 236
MseI TTAA 4 cut(s) 612, 762, 1067, 1382
MslI CAYNNNNRTG 4 cut(s) 1194, 1344, 1494, 1936
MspI CCGG 3 cut(s) 114, 474, 972
MspR9I CCNGG 6 cut(s) 475, 550, 566, 922, 1707, 1821
Mva1269I GAATGC 6 cut(s) 76, 823, 903, 931, 1318, 1969
MvaI CCWGG 5 cut(s) 550, 566, 922, 1707, 1821
MvnI CGCG 1 cut(s) 601
MwoI GCNNNNNNNGC 5 cut(s) 344, 368, 926, 935, 1134
NciI CCSGG 1 cut(s) 475
NcoI CCATGG 1 cut(s) 1651
NdeI CATATG 1 cut(s) 943
NheI GCTAGC 1 cut(s) 1124
NlaIV GGNNCC 5 cut(s) 90, 725, 1393, 1649, 1818
NmeAIII GCCGAG 1 cut(s) 1574
NmuCI GTSAC 2 cut(s) 1228, 1349
NsiI ATGCAT 2 cut(s) 1360, 1969
NspI RCATGY 2 cut(s) 1381, 1939
OliI CACNNNNGTG 1 cut(s) 1936
PaeR7I CTCGAG 1 cut(s) 1776
PauI GCGCGC 1 cut(s) 599
PceI AGGCCT 1 cut(s) 957
PciI ACATGT 2 cut(s) 1377, 1935
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PctI GAATGC 6 cut(s) 76, 823, 903, 931, 1318, 1969
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 2 cut(s) 365, 1018
PflFI GACNNNGTC 1 cut(s) 1208
PfoI TCCNGGA 1 cut(s) 548
PkrI GCNGC 4 cut(s) 919, 1615, 1750, 1894
PleI GAGTC 3 cut(s) 153, 1430, 1860
PmaCI CACGTG 1 cut(s) 1754
PmlI CACGTG 1 cut(s) 1754
PpsI GAGTC 3 cut(s) 153, 1430, 1860
Ppu21I YACGTR 1 cut(s) 1754
PscI ACATGT 2 cut(s) 1377, 1935
PsiI TTATAA 1 cut(s) 194
Psp124BI GAGCTC 1 cut(s) 1139
Psp6I CCWGG 5 cut(s) 548, 564, 920, 1705, 1819
PspCI CACGTG 1 cut(s) 1754
PspEI GGTNACC 1 cut(s) 1349
PspFI CCCAGC 1 cut(s) 1515
PspGI CCWGG 5 cut(s) 548, 564, 920, 1705, 1819
PspN4I GGNNCC 5 cut(s) 90, 725, 1393, 1649, 1818
PspPI GGNCC 5 cut(s) 459, 505, 1049, 1180, 1513
PspXI VCTCGAGB 1 cut(s) 1776
PsyI GACNNNGTC 1 cut(s) 1208
PteI GCGCGC 1 cut(s) 599
RsaI GTAC 3 cut(s) 887, 1584, 1728
RsaNI GTAC 3 cut(s) 886, 1583, 1727
RseI CAYNNNNRTG 4 cut(s) 1194, 1344, 1494, 1936
SacI GAGCTC 1 cut(s) 1139
SaqAI TTAA 4 cut(s) 612, 762, 1067, 1382
SatI GCNGC 4 cut(s) 918, 1614, 1749, 1893
Sau96I GGNCC 5 cut(s) 459, 505, 1049, 1180, 1513
ScaI AGTACT 1 cut(s) 887
SchI GAGTC 3 cut(s) 154, 1431, 1861
ScrFI CCNGG 6 cut(s) 475, 550, 566, 922, 1707, 1821
SduI GDGCHC 1 cut(s) 1139
SfaNI GCATC 8 cut(s) 214, 250, 947, 1074, 1313, 1581, 1600, 1976
Sfr274I CTCGAG 1 cut(s) 1776
SinI GGWCC 2 cut(s) 459, 1180
SlaI CTCGAG 1 cut(s) 1776
SmiMI CAYNNNNRTG 4 cut(s) 1194, 1344, 1494, 1936
SmlI CTYRAG 2 cut(s) 1776, 1887
SmoI CTYRAG 2 cut(s) 1776, 1887
SpeI ACTAGT 2 cut(s) 1225, 1558
Sse9I AATT 9 cut(s) 100, 680, 822, 1077, 1407, 1477, 1740, 1769, 1993
SseBI AGGCCT 1 cut(s) 957
SsiI CCGC 3 cut(s) 42, 345, 489
SspI AATATT 3 cut(s) 289, 355, 1660
SspMI CTAG 6 cut(s) 1125, 1226, 1266, 1559, 1622, 1700
SstI GAGCTC 1 cut(s) 1139
StuI AGGCCT 1 cut(s) 957
StyD4I CCNGG 6 cut(s) 473, 548, 564, 920, 1705, 1819
StyI CCWWGG 1 cut(s) 1651
TaaI ACNGT 6 cut(s) 58, 66, 185, 637, 649, 1210
TaiI ACGT 1 cut(s) 1756
TaqI TCGA 4 cut(s) 104, 240, 895, 1777
TasI AATT 9 cut(s) 100, 680, 822, 1077, 1407, 1477, 1740, 1769, 1993
TatI WGTACW 2 cut(s) 885, 1726
TfiI GAWTC 2 cut(s) 365, 1018
Tru1I TTAA 4 cut(s) 612, 762, 1067, 1382
Tru9I TTAA 4 cut(s) 612, 762, 1067, 1382
TscAI CASTG 1 cut(s) 1182
TseFI GTSAC 2 cut(s) 1228, 1349
TseI GCWGC 4 cut(s) 917, 1613, 1748, 1892
Tsp45I GTSAC 2 cut(s) 1228, 1349
TspDTI ATGAA 7 cut(s) 609, 966, 979, 1419, 1499, 1782, 1808
TspGWI ACGGA 3 cut(s) 8, 736, 1975
TspRI CASTG 1 cut(s) 1182
Tth111I GACNNNGTC 1 cut(s) 1208
VpaK11BI GGWCC 2 cut(s) 459, 1180
XapI RAATTY 2 cut(s) 100, 1769
XceI RCATGY 2 cut(s) 1381, 1939
XhoI CTCGAG 1 cut(s) 1776
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 6 cut(s) 1125, 1226, 1266, 1559, 1622, 1700
ZrmI AGTACT 1 cut(s) 887
Zsp2I ATGCAT 2 cut(s) 1360, 1969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.