Rmu_ssc0000263.1_g000016

Nucleolar complex protein 2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000263.1
OG0008600
Physical Location & Seq
Forward (+)
107098 .. 109610
2513 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1179 bp
atgtcaacaacatcagagcctgctagggcgagagatgagagatgtcgcgaagctagcgtgaagtcatatcttggaaatgctttacatgtcttgcgtcaaatgactgacacagacatgatatcatttactttacagcgtcttaaacattcctccatatttctggctgcttttccgattctcctgaggaagtatgttaagactgcccttgatttgtggggtttaggtggaggtgccctcccaattgcctcccttctatttttaagagatctgtgcattcggctgggatctgattgcttagatgaatgcttcaaggggatctacaaagcctatgtcttgaactgccagtttatgaatgcagcaaaattacaacatgtccagtttcttggaaattgtgtaattgaactttacggtgtagaccttccgactgcatatcaacatgccttcattttcattcggcaattagcaatgatcttgcgagaggcacttagttcaaaaactaaggaagcatttagaaaggtttatgagtggaagttcatgaactgccttgagctctggactggggctgtctgtgcctatggctcagaagctgactttagaccggttgtatatcccctgacccaaataatttatggggctgcccgtctagttccaacagctaggtatttacctctcagattgcgttgtattagaatgcttaatcgaattgctgcttcgacgggtactttcacaccagtttctatgttgcttttggacatgcttgaaatgaaagaattgaataggcccaccacaggtggtgttggcaaagctgttgatttgcgtactatacttaaggttagcaagccaaccctgaagacccgagcatttcaggaggcttgtgtgttgtctgttgttgatgagcttgctgagcatttagcgcagtggagctattccattgctttccctgagttgtcctttataccaggtgtgcgattgcgtggcttttgcaaatccaccaaggttgagaggtttcggagagcaacaagagagcttatccgtcaggtatgtactcagggtgaccacacattctctttacttgtgcttgagcttgacatatgccaactgttgagtgaaggaactgtgattttactatttggtatgctaataattgcatcttttaaatgcggggaatggtgctcatag

Protein Analysis

392

Amino Acids

44.26

Weight (kDa)

9.11

Isoelectric Point (pI)

25.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Noc2 PF03715 98 - 349 1.2e-93 Noc2p family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AccI GTMKAC 1 cut(s) 414
AccII CGCG 1 cut(s) 48
AciI CCGC 1 cut(s) 1161
AclWI GGATC 2 cut(s) 292, 323
AcuI CTGAAG 1 cut(s) 869
AfaI GTAC 3 cut(s) 721, 820, 1045
AfiI CCNNNNNNNGG 1 cut(s) 788
AflII CTTAAG 1 cut(s) 827
AflIII ACRYGT 2 cut(s) 85, 370
AgeI ACCGGT 1 cut(s) 598
AgsI TTSAA 6 cut(s) 310, 337, 401, 492, 761, 775
AjnI CCWGG 1 cut(s) 958
AluBI AGCT 9 cut(s) 53, 550, 587, 656, 806, 898, 924, 1027, 1084
AluI AGCT 9 cut(s) 53, 550, 587, 656, 806, 898, 924, 1027, 1084
Alw21I GWGCWC 2 cut(s) 552, 1175
AlwI GGATC 2 cut(s) 292, 323
AlwNI CAGNNNCTG 2 cut(s) 20, 587
Ama87I CYCGRG 1 cut(s) 855
AoxI GGCC 1 cut(s) 779
ApeKI GCWGC 4 cut(s) 164, 356, 635, 707
ArsI GACNNNNNNTTYG 2 cut(s) 315, 347
AsiGI ACCGGT 1 cut(s) 598
AspLEI GCGC 1 cut(s) 916
AspS9I GGNCC 1 cut(s) 780
AsuHPI GGTGA 1 cut(s) 1064
AsuNHI GCTAGC 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 855
AxyI CCTNAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 552
BbsI GAAGAC 1 cut(s) 857
Bbv12I GWGCWC 2 cut(s) 552, 1175
BbvI GCAGC 4 cut(s) 151, 368, 622, 694
BciT130I CCWGG 1 cut(s) 960
BfaI CTAG 4 cut(s) 24, 54, 644, 657
BfrI CTTAAG 1 cut(s) 827
BglII AGATCT 1 cut(s) 265
BisI GCNGC 4 cut(s) 165, 357, 636, 708
BlpI GCTNAGC 1 cut(s) 903
BlsI GCNGC 4 cut(s) 166, 358, 637, 709
Bme1390I CCNGG 1 cut(s) 960
BmeT110I CYCGRG 1 cut(s) 855
BmgT120I GGNCC 1 cut(s) 780
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 960
BmrI ACTGGG 1 cut(s) 567
BmsI GCATC 1 cut(s) 1157
BmtI GCTAGC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 567
BpiI GAAGAC 1 cut(s) 857
BplI GAGNNNNNCTC 2 cut(s) 219, 251
Bpu1102I GCTNAGC 1 cut(s) 903
BpuEI CTTGAG 2 cut(s) 566, 1100
BsaJI CCNNGG 1 cut(s) 993
BsaWI WCCGGW 1 cut(s) 598
Bsc4I CCNNNNNNNGG 1 cut(s) 788
Bse118I RCCGGY 1 cut(s) 598
Bse1I ACTGG 4 cut(s) 343, 376, 562, 731
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 2 cut(s) 471, 930
BseBI CCWGG 1 cut(s) 960
BseDI CCNNGG 1 cut(s) 993
BseLI CCNNNNNNNGG 1 cut(s) 788
BseMI GCAATG 2 cut(s) 471, 930
BseMII CTCAG 6 cut(s) 173, 594, 685, 894, 933, 1061
BseNI ACTGG 4 cut(s) 343, 376, 562, 731
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 4 cut(s) 151, 368, 622, 694
BseYI CCCAGC 1 cut(s) 280
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 781
BshNI GGYRCC 1 cut(s) 230
BshTI ACCGGT 1 cut(s) 598
BsiHKAI GWGCWC 2 cut(s) 552, 1175
BsiHKCI CYCGRG 1 cut(s) 855
BsiSI CCGG 1 cut(s) 599
BslI CCNNNNNNNGG 1 cut(s) 788
BsmI GAATGC 4 cut(s) 273, 308, 358, 696
BsnI GGCC 1 cut(s) 781
BsoBI CYCGRG 1 cut(s) 855
Bsp1286I GDGCHC 3 cut(s) 235, 552, 1175
Bsp143I GATC 4 cut(s) 265, 284, 315, 468
Bsp1720I GCTNAGC 1 cut(s) 903
Bsp68I TCGCGA 1 cut(s) 48
BspACI CCGC 1 cut(s) 1161
BspANI GGCC 1 cut(s) 781
BspCNI CTCAG 6 cut(s) 174, 593, 684, 895, 934, 1060
BspFNI CGCG 1 cut(s) 48
BspHI TCATGA 1 cut(s) 534
BspLI GGNNCC 1 cut(s) 232
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 2 cut(s) 292, 323
BspT107I GGYRCC 1 cut(s) 230
BspTI CTTAAG 1 cut(s) 827
BsrDI GCAATG 2 cut(s) 471, 930
BsrFI RCCGGY 1 cut(s) 598
BsrI ACTGG 4 cut(s) 343, 376, 562, 731
BssAI RCCGGY 1 cut(s) 598
BssECI CCNNGG 1 cut(s) 993
BssMI GATC 4 cut(s) 265, 284, 315, 468
BssT1I CCWWGG 1 cut(s) 993
Bst2UI CCWGG 1 cut(s) 960
Bst4CI ACNGT 3 cut(s) 410, 1101, 1117
BstAFI CTTAAG 1 cut(s) 827
BstC8I GCNNGC 4 cut(s) 21, 55, 839, 900
BstDEI CTNAG 9 cut(s) 182, 295, 485, 498, 580, 671, 903, 942, 1047
BstEII GGTNACC 1 cut(s) 1052
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 916
BstKTI GATC 4 cut(s) 268, 287, 318, 471
BstMBI GATC 4 cut(s) 265, 284, 315, 468
BstMWI GCNNNNNNNGC 4 cut(s) 54, 569, 904, 913
BstNI CCWGG 1 cut(s) 960
BstNSI RCATGY 4 cut(s) 89, 374, 440, 757
BstPI GGTNACC 1 cut(s) 1052
BstSCI CCNGG 1 cut(s) 958
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 4 cut(s) 151, 368, 622, 694
BstV2I GAAGAC 1 cut(s) 857
BstX2I RGATCY 3 cut(s) 265, 284, 315
BstXI CCANNNNNNTGG 2 cut(s) 160, 383
BstYI RGATCY 3 cut(s) 265, 284, 315
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 1 cut(s) 781
BtsI GCAGTG 1 cut(s) 923
BtsIMutI CAGTG 1 cut(s) 923
BtuMI TCGCGA 1 cut(s) 48
Cac8I GCNNGC 4 cut(s) 21, 55, 839, 900
CaiI CAGNNNCTG 2 cut(s) 20, 587
CciI TCATGA 1 cut(s) 534
CfoI GCGC 1 cut(s) 916
Cfr10I RCCGGY 1 cut(s) 598
Cfr13I GGNCC 1 cut(s) 780
CseI GACGC 2 cut(s) 83, 125
CsiI ACCWGGT 1 cut(s) 958
Csp6I GTAC 3 cut(s) 720, 819, 1044
CspAI ACCGGT 1 cut(s) 598
CspCI CAANNNNNGTGG 2 cut(s) 979, 1014
CviAII CATG 6 cut(s) 86, 115, 371, 437, 535, 754
CviQI GTAC 3 cut(s) 720, 819, 1044
DdeI CTNAG 9 cut(s) 182, 295, 485, 498, 580, 671, 903, 942, 1047
DpnI GATC 4 cut(s) 267, 286, 317, 470
DpnII GATC 4 cut(s) 265, 284, 315, 468
DraI TTTAAA 1 cut(s) 1156
Ecl136II GAGCTC 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 993
Eco24I GRGCYC 1 cut(s) 552
Eco32I GATATC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 869
Eco81I CCTNAGG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 855
Eco91I GGTNACC 1 cut(s) 1052
EcoICRI GAGCTC 1 cut(s) 550
EcoO65I GGTNACC 1 cut(s) 1052
EcoRII CCWGG 1 cut(s) 958
EcoRV GATATC 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 993
EcoT38I GRGCYC 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 993
FaeI CATG 6 cut(s) 89, 118, 374, 440, 538, 757
FatI CATG 6 cut(s) 85, 114, 370, 436, 534, 753
FauI CCCGC 1 cut(s) 1154
FauNDI CATATG 1 cut(s) 1091
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 4 cut(s) 165, 357, 636, 708
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 4 cut(s) 165, 357, 636, 708
FspBI CTAG 4 cut(s) 24, 54, 644, 657
GlaI GCGC 1 cut(s) 915
GluI GCNGC 4 cut(s) 165, 357, 636, 708
GsaI CCCAGC 1 cut(s) 284
HaeIII GGCC 1 cut(s) 781
HapII CCGG 1 cut(s) 599
HgaI GACGC 2 cut(s) 83, 125
HhaI GCGC 1 cut(s) 916
Hin1II CATG 6 cut(s) 89, 118, 374, 440, 538, 757
Hin6I GCGC 1 cut(s) 914
HinP1I GCGC 1 cut(s) 914
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 175
HpaII CCGG 1 cut(s) 599
HphI GGTGA 1 cut(s) 1064
Hpy166II GTNNAC 2 cut(s) 6, 415
Hpy188I TCNGA 7 cut(s) 16, 174, 289, 423, 583, 674, 1011
Hpy188III TCNNGA 6 cut(s) 47, 181, 334, 535, 553, 866
Hpy8I GTNNAC 2 cut(s) 6, 415
Hpy99I CGWCG 1 cut(s) 718
HpyAV CCTTC 4 cut(s) 260, 428, 451, 1103
HpyCH4III ACNGT 3 cut(s) 410, 1101, 1117
HpyCH4V TGCA 5 cut(s) 273, 356, 428, 984, 1148
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 569, 904, 913
HpyF3I CTNAG 9 cut(s) 182, 295, 485, 498, 580, 671, 903, 942, 1047
Hsp92II CATG 6 cut(s) 89, 118, 374, 440, 538, 757
HspAI GCGC 1 cut(s) 914
Kzo9I GATC 4 cut(s) 265, 284, 315, 468
LmnI GCTCC 1 cut(s) 921
Lsp1109I GCAGC 4 cut(s) 151, 368, 622, 694
LweI GCATC 1 cut(s) 1157
MabI ACCWGGT 1 cut(s) 958
MaeI CTAG 4 cut(s) 24, 54, 644, 657
MaeIII GTNAC 1 cut(s) 1052
MalI GATC 4 cut(s) 267, 286, 317, 470
MboI GATC 4 cut(s) 265, 284, 315, 468
MboII GAAGA 1 cut(s) 862
MfeI CAATTG 1 cut(s) 240
MflI RGATCY 3 cut(s) 265, 284, 315
MhlI GDGCHC 3 cut(s) 235, 552, 1175
MluCI AATT 9 cut(s) 240, 362, 388, 396, 458, 624, 702, 770, 1143
MmeI TCCRAC 2 cut(s) 446, 674
MnlI CCTC 9 cut(s) 160, 177, 221, 245, 256, 472, 678, 862, 996
MseI TTAA 6 cut(s) 141, 195, 260, 696, 828, 1155
MslI CAYNNNNRTG 1 cut(s) 113
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 1 cut(s) 599
MspR9I CCNGG 1 cut(s) 960
MunI CAATTG 1 cut(s) 240
Mva1269I GAATGC 4 cut(s) 273, 308, 358, 696
MvaI CCWGG 1 cut(s) 960
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 54, 569, 904, 913
NdeI CATATG 1 cut(s) 1091
NdeII GATC 4 cut(s) 265, 284, 315, 468
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 6 cut(s) 89, 118, 374, 440, 538, 757
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 1052
NruI TCGCGA 1 cut(s) 48
NspI RCATGY 4 cut(s) 89, 374, 440, 757
PagI TCATGA 1 cut(s) 534
PciI ACATGT 2 cut(s) 85, 370
PctI GAATGC 4 cut(s) 273, 308, 358, 696
PfeI GAWTC 1 cut(s) 175
PinAI ACCGGT 1 cut(s) 598
PkrI GCNGC 4 cut(s) 166, 358, 637, 709
PscI ACATGT 2 cut(s) 85, 370
Psp124BI GAGCTC 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 958
PspEI GGTNACC 1 cut(s) 1052
PspFI CCCAGC 1 cut(s) 280
PspGI CCWGG 1 cut(s) 958
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 780
PstNI CAGNNNCTG 2 cut(s) 20, 587
PsuI RGATCY 3 cut(s) 265, 284, 315
RruI TCGCGA 1 cut(s) 48
RsaI GTAC 3 cut(s) 721, 820, 1045
RsaNI GTAC 3 cut(s) 720, 819, 1044
RseI CAYNNNNRTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 6 cut(s) 141, 195, 260, 696, 828, 1155
SatI GCNGC 4 cut(s) 165, 357, 636, 708
Sau3AI GATC 4 cut(s) 265, 284, 315, 468
Sau96I GGNCC 1 cut(s) 780
ScrFI CCNGG 1 cut(s) 960
SduI GDGCHC 3 cut(s) 235, 552, 1175
SexAI ACCWGGT 1 cut(s) 958
SfaNI GCATC 1 cut(s) 1157
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 3 cut(s) 545, 827, 1079
SmoI CTYRAG 3 cut(s) 545, 827, 1079
Sse9I AATT 9 cut(s) 240, 362, 388, 396, 458, 624, 702, 770, 1143
SsiI CCGC 1 cut(s) 1161
SspMI CTAG 4 cut(s) 24, 54, 644, 657
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 1 cut(s) 958
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 3 cut(s) 410, 1101, 1117
TaqI TCGA 2 cut(s) 700, 713
TasI AATT 9 cut(s) 240, 362, 388, 396, 458, 624, 702, 770, 1143
TatI WGTACW 1 cut(s) 1043
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 6 cut(s) 141, 195, 260, 696, 828, 1155
Tru9I TTAA 6 cut(s) 141, 195, 260, 696, 828, 1155
TscAI CASTG 1 cut(s) 923
TseFI GTSAC 1 cut(s) 1052
TseI GCWGC 4 cut(s) 164, 356, 635, 707
Tsp45I GTSAC 1 cut(s) 1052
TspDTI ATGAA 7 cut(s) 315, 365, 433, 439, 523, 551, 779
TspGWI ACGGA 1 cut(s) 1022
TspRI CASTG 1 cut(s) 923
Vha464I CTTAAG 1 cut(s) 827
XceI RCATGY 4 cut(s) 89, 374, 440, 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 4 cut(s) 24, 54, 644, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.