Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000264.1

Orthogroup ID

OG0004432

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2067

Gene Structure 2067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

tctgaggattctctggttgaattgcttcaaagcctagttgacatggatatatcattccaagacctcaaggatactgatattgggaggcaagtgagtcaattacgcaagcaacatcaaggcgaggttgttcggaaattggcgaagcaacttgtcaggaaatggaaaggtattgtggatgaatgggtgaagttacatggagaagagccaactaattcagtcatggttgacggagactcaccacagcagaaaattcaccagaatggtcatcaccaggtgcctgattttggttactccccaaatcctcataatgggagttctgggtcagacaagaacaattcagaaccagaacgcaagcccaaggtgattcctaggagagaagttccaccaaaaccaatccaatctgtgtctgctgctcaaaatagacagagagaacagagggaaagaaattttgacgctgacgataaactggcttcagcacgaaaacgacttcaagcgaattacaaagaagctgagaatgccaaaaggcaaagaacaattcaagtgatggacatccatgagataccaaaaccaaagaactccttcatcgccaagaacaaaggcggcggaggtagcggttctcaccagggcaggcattgggtcaaggttggagagataggggccctgggccagcccgccttgtgggttggtggaagggatggtgtggtttttgctggacttgcacctagtgataattattttaagtcgttctattcttggtggagctttggaagaagtgaagtcaaagagagcttttatgcccctttagaactcaataattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070449 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

272

Amino Acids

30.68

Weight (kDa)

9.33

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med26	PF08711	7 - 58	1.4e-12	TFIIS helical bundle-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09850 AT5G09850 AT5G09850 AT5G09850 AT5G09850
fragaria_vesca	FvH4_1g23670 FvH4_1g23670 FvH4_1g23670 FvH4_1g23670
malus_domestica	MD01G1024900.v1.1 MD15G1319400.v1.1
prunus_persica	Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1 Prupe.6G180300_v2.0.a1
pyrus_communis	pycom01g05280 pycom15g29740
rosa_chinensis	RchiOBHm_Chr2g0119271
rosa_laevigata	RLG00000018461
rosa_multiflora	Rmu_co8400383.1_g000001 Rmu_sc0002788.1_g000002 Rmu_ssc0000264.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124360
rosa_rugosa	Rorug02G0221400 Rorug02G0221400
rosa_samantha	Rh2AG279500 Rh2BG290200 Rh2DG285500 Rh2DG304500
rosa_wichuraiana	Rw2G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	274
AciI	CCGC	4 cut(s)	600, 603, 612, 672
AcsI	RAATTY	2 cut(s)	249, 445
AcuI	CTGAAG	1 cut(s)	456
AdeI	CACNNNGTG	2 cut(s)	274, 725
AfiI	CCNNNNNNNGG	3 cut(s)	284, 308, 678
AgsI	TTSAA	4 cut(s)	20, 29, 491, 539
AjnI	CCWGG	3 cut(s)	270, 621, 660
AluBI	AGCT	3 cut(s)	509, 762, 789
AluI	AGCT	3 cut(s)	509, 762, 789
Alw26I	GTCTC	1 cut(s)	225
AoxI	GGCC	2 cut(s)	657, 664
ApaI	GGGCCC	1 cut(s)	661
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	2 cut(s)	249, 445
Asp700I	GAANNNNTTC	2 cut(s)	24, 578
AspA2I	CCTAGG	1 cut(s)	368
AspS9I	GGNCC	3 cut(s)	657, 658, 664
AsuHPI	GGTGA	6 cut(s)	196, 228, 245, 260, 373, 611
AvrII	CCTAGG	1 cut(s)	368
BaeGI	GKGCMC	1 cut(s)	661
BanI	GGYRCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	661
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	2 cut(s)	538, 689
BciT130I	CCWGG	3 cut(s)	272, 623, 662
BciVI	GTATCC	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	3 cut(s)	35, 369, 723
BfuI	GTATCC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	411, 601
BlnI	CCTAGG	1 cut(s)	368
BlsI	GCNGC	2 cut(s)	412, 602
Bme1390I	CCNGG	3 cut(s)	272, 623, 662
BmgT120I	GGNCC	3 cut(s)	657, 658, 664
BmiI	GGNNCC	3 cut(s)	276, 658, 659
BmrFI	CCNGG	3 cut(s)	272, 623, 662
BpuEI	CTTGAG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	548
BsaJI	CCNNGG	5 cut(s)	357, 368, 622, 660, 661
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 308, 678
Bse1I	ACTGG	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	548
BseBI	CCWGG	3 cut(s)	272, 623, 662
BseDI	CCNNGG	5 cut(s)	357, 368, 622, 660, 661
BseGI	GGATG	3 cut(s)	181, 549, 700
BseJI	GATNNNNATC	1 cut(s)	548
BseLI	CCNNNNNNNGG	3 cut(s)	284, 308, 678
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	471
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	1 cut(s)	397
BshFI	GGCC	2 cut(s)	659, 666
BshNI	GGYRCC	1 cut(s)	274
BslI	CCNNNNNNNGG	3 cut(s)	284, 308, 678
BsmAI	GTCTC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	2 cut(s)	659, 666
Bsp120I	GGGCCC	1 cut(s)	657
Bsp1286I	GDGCHC	1 cut(s)	661
BspACI	CCGC	4 cut(s)	600, 603, 612, 672
BspANI	GGCC	2 cut(s)	659, 666
BspCNI	CTCAG	1 cut(s)	502
BspLI	GGNNCC	3 cut(s)	276, 658, 659
BspQI	GCTCTTC	1 cut(s)	195
BspT107I	GGYRCC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	5 cut(s)	357, 368, 622, 660, 661
BssT1I	CCWWGG	2 cut(s)	357, 368
Bst2UI	CCWGG	3 cut(s)	272, 623, 662
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	5 cut(s)	107, 353, 629, 668, 672
BstDEI	CTNAG	2 cut(s)	3, 510
BstF5I	GGATG	3 cut(s)	181, 549, 700
BstMAI	GTCTC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	3 cut(s)	515, 609, 716
BstNI	CCWGG	3 cut(s)	272, 623, 662
BstSCI	CCNGG	3 cut(s)	270, 621, 660
BstSLI	GKGCMC	1 cut(s)	661
BstV1I	GCAGC	1 cut(s)	397
BsuI	GTATCC	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	659, 666
BtgZI	GCGATG	1 cut(s)	568
BtsCI	GGATG	3 cut(s)	181, 549, 700
Cac8I	GCNNGC	5 cut(s)	107, 353, 629, 668, 672
Cfr13I	GGNCC	3 cut(s)	657, 658, 664
CseI	GACGC	1 cut(s)	461
CsiI	ACCWGGT	1 cut(s)	270
CviAII	CATG	4 cut(s)	43, 194, 220, 554
DdeI	CTNAG	2 cut(s)	3, 510
DraIII	CACNNNGTG	2 cut(s)	274, 725
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	618
Eco130I	CCWWGG	2 cut(s)	357, 368
Eco24I	GRGCYC	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	456
EcoO109I	RGGNCCY	2 cut(s)	657, 658
EcoRII	CCWGG	3 cut(s)	270, 621, 660
EcoT14I	CCWWGG	2 cut(s)	357, 368
EcoT38I	GRGCYC	1 cut(s)	661
ErhI	CCWWGG	2 cut(s)	357, 368
FaeI	CATG	4 cut(s)	46, 197, 223, 557
FaiI	YATR	7 cut(s)	44, 50, 195, 221, 306, 555, 795
FalI	AAGNNNNNCTT	2 cut(s)	563, 595
FatI	CATG	4 cut(s)	42, 193, 219, 553
FauI	CCCGC	1 cut(s)	679
Fnu4HI	GCNGC	2 cut(s)	411, 601
FokI	GGATG	3 cut(s)	188, 536, 707
FriOI	GRGCYC	1 cut(s)	661
Fsp4HI	GCNGC	2 cut(s)	411, 601
FspBI	CTAG	3 cut(s)	35, 369, 723
GluI	GCNGC	2 cut(s)	411, 601
HaeIII	GGCC	2 cut(s)	659, 666
HgaI	GACGC	1 cut(s)	461
Hin1II	CATG	4 cut(s)	46, 197, 223, 557
HincII	GTYRAC	2 cut(s)	40, 226
HindII	GTYRAC	2 cut(s)	40, 226
HinfI	GANTC	4 cut(s)	8, 94, 233, 364
HphI	GGTGA	6 cut(s)	196, 228, 245, 260, 373, 611
Hpy166II	GTNNAC	2 cut(s)	40, 226
Hpy188I	TCNGA	4 cut(s)	4, 132, 325, 340
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	2 cut(s)	40, 226
HpyAV	CCTTC	2 cut(s)	589, 684
HpyCH4V	TGCA	1 cut(s)	719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	515, 609, 716
HpyF3I	CTNAG	2 cut(s)	3, 510
Hsp92II	CATG	4 cut(s)	46, 197, 223, 557
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	759
Lsp1109I	GCAGC	1 cut(s)	397
MabI	ACCWGGT	1 cut(s)	270
MaeI	CTAG	3 cut(s)	35, 369, 723
MaeIII	GTNAC	2 cut(s)	189, 287
MboII	GAAGA	2 cut(s)	212, 780
MhlI	GDGCHC	1 cut(s)	661
MlyI	GAGTC	2 cut(s)	103, 227
MmeI	TCCRAC	1 cut(s)	625
MnlI	CCTC	6 cut(s)	74, 78, 115, 312, 429, 599
MroXI	GAANNNNTTC	2 cut(s)	24, 578
MseI	TTAA	2 cut(s)	738, 817
MslI	CAYNNNNRTG	1 cut(s)	258
MspR9I	CCNGG	3 cut(s)	272, 623, 662
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	3 cut(s)	272, 623, 662
MwoI	GCNNNNNNNGC	3 cut(s)	515, 609, 716
NlaIII	CATG	4 cut(s)	46, 197, 223, 557
NlaIV	GGNNCC	3 cut(s)	276, 658, 659
PasI	CCCWGGG	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	195
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	2 cut(s)	24, 578
PfeI	GAWTC	2 cut(s)	8, 364
PkrI	GCNGC	2 cut(s)	412, 602
PleI	GAGTC	2 cut(s)	102, 227
PpsI	GAGTC	2 cut(s)	102, 227
Psp6I	CCWGG	3 cut(s)	270, 621, 660
PspGI	CCWGG	3 cut(s)	270, 621, 660
PspN4I	GGNNCC	3 cut(s)	276, 658, 659
PspOMI	GGGCCC	1 cut(s)	657
PspPI	GGNCC	3 cut(s)	657, 658, 664
RseI	CAYNNNNRTG	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	738, 817
SatI	GCNGC	2 cut(s)	411, 601
Sau96I	GGNCC	3 cut(s)	657, 658, 664
SchI	GAGTC	2 cut(s)	103, 227
ScrFI	CCNGG	3 cut(s)	272, 623, 662
SduI	GDGCHC	1 cut(s)	661
SexAI	ACCWGGT	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SsiI	CCGC	4 cut(s)	600, 603, 612, 672
SspMI	CTAG	3 cut(s)	35, 369, 723
StyD4I	CCNGG	3 cut(s)	270, 621, 660
StyI	CCWWGG	2 cut(s)	357, 368
TauI	GCSGC	1 cut(s)	603
TfiI	GAWTC	2 cut(s)	8, 364
Tru1I	TTAA	2 cut(s)	738, 817
Tru9I	TTAA	2 cut(s)	738, 817
TseI	GCWGC	1 cut(s)	410
TspDTI	ATGAA	2 cut(s)	192, 571
TspGWI	ACGGA	1 cut(s)	243
XapI	RAATTY	2 cut(s)	249, 445
XmaJI	CCTAGG	1 cut(s)	368
XmnI	GAANNNNTTC	2 cut(s)	24, 578
XspI	CTAG	3 cut(s)	35, 369, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.