Rmu_ssc0000281.1_g000007

Ribosomal protein S6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000281.1
OG0013271
Physical Location & Seq
Forward (+)
26033 .. 26446
414 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 414 bp
atggatttacttgcagcttttctaggggagaagagagccaggatatggagactgagtgattggggaatgcgaagactagcatacaaaatacagaaagccaagaatgcctactacgttctaatgaactttgagatagacgccaaatggataaatgatttcaagagcctgttggacaaggatgaaagagtcattcggcatctggtgatgaagagggatgaggctatcacagaggactgccctgctcctcctgagtttcagtccatgaatgcaggtacggattctgaagaggatgacgaggatgaggatggtatggaatatgatgatgaagattacgatgatgaagatgggatgatcattgttgacgctgacaatgatgatgtagaagatagtaaactactagaacaactagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S6

Protein Analysis

137

Amino Acids

16.05

Weight (kDa)

4.14

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6 PF01250 4 - 70 1.5e-18 Ribosomal protein S6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17170
fragaria_vesca FvH4_4g20660
malus_domestica MD13G1149000.v1.1 MD16G1149200.v1.1
prunus_persica Prupe.1G113000_v2.0.a1
pyrus_communis pycom13g12820 pycom16g12750
rosa_chinensis RchiOBHm_Chr4g0426061
rosa_laevigata RLG00000007320
rosa_multiflora Rmu_ssc0000281.1_g000002 Rmu_ssc0000281.1_g000007
rosa_roxburghii Rroxscaffold_5G00368060
rosa_rugosa Rorug04G0208200
rosa_samantha Rh4AG265200 Rh4BG271300 Rh4CG284300 Rh4DG267600
rosa_wichuraiana Rw4G022930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 260
AccB7I CCANNNNNTGG 1 cut(s) 45
AcuI CTGAAG 1 cut(s) 303
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 45
AgsI TTSAA 1 cut(s) 160
AhlI ACTAGT 1 cut(s) 406
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 26
BccI CCATC 2 cut(s) 299, 338
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 43
BcuI ACTAGT 1 cut(s) 406
BfaI CTAG 4 cut(s) 23, 77, 398, 407
BfuAI ACCTGC 1 cut(s) 260
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 40
BseGI GGATG 6 cut(s) 184, 220, 295, 304, 310, 354
BseLI CCNNNNNNNGG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 44, 240
BseRI GAGGAG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 43
BsmI GAATGC 3 cut(s) 72, 109, 271
Bsp143I GATC 1 cut(s) 351
BspCNI CTCAG 2 cut(s) 45, 241
BspMI ACCTGC 1 cut(s) 260
BssMI GATC 1 cut(s) 351
BssNI GRCGYC 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 40
Bst6I CTCTTC 3 cut(s) 26, 203, 279
BstACI GRCGYC 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 53, 249
BstF5I GGATG 6 cut(s) 184, 220, 295, 304, 310, 354
BstKTI GATC 1 cut(s) 354
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 79
BtsCI GGATG 6 cut(s) 184, 220, 295, 304, 310, 354
BveI ACCTGC 1 cut(s) 260
CseI GACGC 2 cut(s) 146, 371
Csp6I GTAC 1 cut(s) 273
CviAII CATG 1 cut(s) 262
CviJI RGCY 5 cut(s) 17, 38, 98, 165, 221
CviKI_1 RGCY 5 cut(s) 17, 38, 98, 165, 221
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 2 cut(s) 53, 249
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Eam1104I CTCTTC 3 cut(s) 26, 203, 279
EarI CTCTTC 3 cut(s) 26, 203, 279
Eco57I CTGAAG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 38
FaeI CATG 1 cut(s) 265
FaiI YATR 5 cut(s) 46, 82, 263, 311, 318
FatI CATG 1 cut(s) 261
FbaI TGATCA 1 cut(s) 351
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 6 cut(s) 191, 227, 302, 311, 317, 361
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 4 cut(s) 23, 77, 398, 407
GluI GCNGC 1 cut(s) 15
HgaI GACGC 2 cut(s) 146, 371
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 1 cut(s) 265
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 2 cut(s) 186, 278
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 361, 392
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 2 cut(s) 160, 248
Hpy8I GTNNAC 2 cut(s) 361, 392
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 14, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 53, 249
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 7 cut(s) 25, 52, 179, 185, 252, 255, 261
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 1 cut(s) 205
MaeI CTAG 4 cut(s) 23, 77, 398, 407
MaeII ACGT 1 cut(s) 114
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 7 cut(s) 43, 84, 220, 296, 338, 353, 395
MlyI GAGTC 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 7 cut(s) 204, 211, 223, 255, 280, 289, 295
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 3 cut(s) 72, 109, 271
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 1 cut(s) 351
NlaIII CATG 1 cut(s) 265
PctI GAATGC 3 cut(s) 72, 109, 271
PfeI GAWTC 1 cut(s) 278
PflMI CCANNNNNTGG 1 cut(s) 45
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 351
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 40
SetI ASST 3 cut(s) 19, 117, 274
SfaNI GCATC 1 cut(s) 205
SpeI ACTAGT 1 cut(s) 406
SspMI CTAG 4 cut(s) 23, 77, 398, 407
StyD4I CCNGG 1 cut(s) 38
TaiI ACGT 1 cut(s) 117
TfiI GAWTC 1 cut(s) 278
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 6 cut(s) 137, 195, 221, 278, 339, 354
TspGWI ACGGA 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 45
XspI CTAG 4 cut(s) 23, 77, 398, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.