Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000314.1

Orthogroup ID

OG0003867

Physical Location & Seq

Genomic Coordinates Forward (+)

13937 .. 30798

Gene Structure 16862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 10791 bp

atgaaatggggaacattgcttaaggacttgagagagaaggttggcctcactaattcccctgcctctgcttcagcttcttctgccacagctgctgcttcttcttcttcttcttcggatgctctttcttcctctaccaatgctcttacagctcttcacggctcgtactctccttcaagagacaaacatgaactggaattggacttcaagaggttttgggaagagttccggtcatccagctctgaaaaggaaaaagaagcggccttaaatttaactgtagatgttttctgtagattagtgaagcagcatgcaaacgtagctcagttagttactatgttagttgaaacacatatattctcgtttgtggtgggaagagcatttgtaacagatattgaaaagttaaaaatcagcagcaaaacaagatgtttggatatagcaaaagtattgaagtttttttcagaaatcacaaaggatggcattagtcctggttcaaatatgttgacagccatagaagtccttgtttcagggcctattgataagcaatctctccttgattcgggaatattatgctgtctcattcatattcttaatgcccttctggttcctgatgaagccattcaacaccaaaaggctgctggtcatgaagaaccatttatatctgagaaagattacaatggtgaagctggtcaagtccgtcggcttgaggtagagggaagtgttgtgcatgttatgaaagcattggcaaaccatcctttggcagcgcagagtttgattgaggatgattcgctacagttgctctttcagatggttgcaaatgggtcgttgactgtcttctctcgatataaggagggactagttctgctgcacatcatacaacttcatagacatgctatgcagattcttggtcttcttttggtcaatgacaatggaagcactgcacgatatattcgcaaacatcatctgataaaagttcttttgatggcagttaaggatttcaatcctgattgtggtgattctgcatacactatgggaattgtagatttgttgcttgaatgtgtagagttgtcatataggcctgaggctggcggtgttaggctcagggaggatattcataatgcccatgggtatcagttcctcgttcggttcgcattagcactttcatccatgtcaaaaaatcaggggtttcatgctgtttattccagatcttcagaccaaagttctgctttagatggtcccgatgcatctaatgttgcagacatgcaggatatcatgggagaaaaggagtccttaacccaacaactttctcctacactctctaggttgcttgatgttcttgttaatctagctcaaactggcccaactgagtctgctggaacttctggagtcaaaggttccaaatcttcccatatgaggtctagtggtcataacaggagtctcacaacatcttccgatcgcttggctgatgacgtgtgggaaaaggacaataataaagttaaagaccttgaagcagttcagatgttgcaggacatttttctcaaagcagataatagggagttgcaagcagaagttcttaatcggatgtttaaaatattctcaagtcatcttgaaaactacaagttgtgccaacagttacgaactgttccacttttaatcctaaatatggacggttttcctccttccttgcgcgagataattttaaaaattctcgagtatgctgtcactgtggtgaattgcattcctgagcaagaattactttcactttgctgcttgttgcagcaaccaatagcatcagatttaaagcacactatactttccttctttgttaagcttctatcgtttgaccagcagtacaagaaagtcctccgagaagttggtgtcttggaggttttgttggatgacctcaagcagcacaagttccttttgggtgcagaccatagtaatactaatctgctggagaaaaaatcgggatcaagcagcttcaaaccacacttggacaataaggatgtgattatttcatcacctaggctaatggaatctggttcagggaagcttcctatatttgaagttgatggtacaatttccgttgcatgggattgcatggtatctttactaaagaaaactgaaacaaatcagtcatcttttcgtttggctgatggggtaactgctgttctcccatttcttgtgtctgatatacatcgctcgggtgtcctaagggtcttgtcatgtttgatcattgaagatggtagccaggcacatcctgaagagttaggtgcaattgttgaaatcctaaaaagtggaatggttacaagtgtttcgggatctcaatacaggcttgaaaatgatgcaaaatgtgacactatgggagctttgtggcgcattttgggagttaataactcagctcagagggttttcggtgaagctactggcttttctcttctgcttaccacactgcatagtttccaaggtgatggagggcctgcagatcaatcttctttggaagtctacattaaggtgtttacatacctgttgcgtgttgtgactgctggagtgtgtgataatgcagttaataggacaaaattgcacacaattataacatcccaaactttctatgatcttttatccgagtctggcttactttgtgtggactgtgaaaagcaagtcatacagttactattcgaactagctcttgaaattgtgcttccaccgttcttgacaccagaaagtcatgcaccatctgatgtgcctgatagtggggcgtcaagtttttcactaacgactacatcaggctcatttcatcccaataaggaaagggtgtacaatgctggtgctgttagagttctcattcgttcattactgctctttactcctaagctgcagcttgaagtgctgaaacttattgaaagtcttgctcgtgctggccccttcaatcaggaaaacctcacctctgtaggttgcgtagaacttctgctggaaaccatccatcctttcctttcgggctcatctccattacttaaatatgctttggagattgtagaagttcttggggcatacaggctatccgcatcagaacttcgaatgctcattagatatgtgttgcaaatgaggcaaatgaaatcaggtagcatacttgttggaatgatggaaaggttaatccttatggaggatatggcctcggacagtgtttctcttgcaccctttgtagagatggacatgagcaaaattgggcatgcttccattcaggtctccctgggagaaagatcttggcctccagctgctggttattcatttgtttgttggtttcagtttcaaaatcttttcaagtcgcaagttaaggaaacagagtcttccaaagctggtacttcgaaaaggcggcctagtgggcaaaatcacgagcggcatattctacgaatgttttctgtgggtgcagcaaataatgaaactacattctatgcagaactatatcttcaggaggatggtgttctgaccctcgcaaccagcaactcttgctccctatcattttcaggcttggaatttgaggagggcaggtggcatcaccttgcagttgtacataacaaaccaaatgctcttgctggactattccaagctagtgttgcttatgtgtatcttgatggaaagctgagacacacagggaaactaggatattctccatcaccttttggaattcctttgcaggtaacagtagggacccctgttacctgtgcaaaagttagtgagttgacctggaaggtccgctcgtgctatctttttgaagaggtgctcacctcaggttgtatctgtttcatgtacattcttggtagaggatatagggggctcttccaagacacagatctccttcgttttgtccctaaccaggcatgtggtggcggtagcatggctatcttagattcactagatgctgacttgaccctggcctctaattcacagaagcttgacactgcaaacaagcaaggagacacaaaagcagatggcagtggaattgtttgggatatggagagactagcaaatctctccctgcagcttgctggaaggaagcttatatttgcgtttgatggtacctgtacagaagctaatagagcatctggggctttatacatgctcaatctagttgatccaatgtctgcagctgcttctcctattgggggtattccacgctttggacgtcttcatggggatatttatctatgtaggcaatgtgtagttggtgatactatctgtccagttggtggaattactgttgtccttgccttagttgaggctgctgagactagggacatgcttcacatggccctcactttattggcatgtgctcttcatcagaatcctcagaatgtgagagacatgcagaaatgccggggataccatctactatctctttttttgcgtccacgaatgtcactatttgatatgcaatctcttgagatatttttccagattgctgcctgtgaagcttcattttctgaaccaaggaagttgaagtatactcggactaatttgtcaccagcctcaactgtgcaggaaaccagttttgaggaacttaatctgtcaaggtttcgtgaggagttttcatcagttggatcccaaggagacatggacgatttttctgcgcagaaagattcatttagtcatatatcagagctagaaaatgttgatattccaactgagacctcaaattgcatcgtgttgtccaatgcagacatggttgagcatgtcctattggattggacattgtgggtaaaagcttcagtttcgattcaaattgctctccttggttttctggagcatctagtgtcaatgcactggtacagaaaccataacctcactgttttgcgccgtatagaccttgttcaacatttactcgttaccctgcaacgtggtgatgttgaagttcctgttttggagaaattggttgtattgcttggggtaattctagaagatggttttctgtcttctgaactggaacatgtggttaggtttgtcattatgacatttgatccaccagaactgacacccagacatccaataatgcgtgaggccatggggaagcatgtaatcgttcgaaatatgctgctggagatgctgattgatctgcaagtaaccattaaatcagaagagttgcttgagcagtggcacaagattgtttcatccaaattgataacatattttctagatgaggctgtccacccgacaagcatgagatggatcatgactctgcttggtgtttgtcttacttcctctcctacatttgcactgaaatttcgctcgagtggaggttatcaaggcttgtcccgggtgcttcctagtttctatgattccccagacatatattatattttattttgtctgatttttggcaagcctgtttatcctagattgccagaagttcgcatgctagactttcatgcccttatgccgaatgatggaagttccgtggaattgaaatttatagagttgttggagtctgtgattactatggcaaaatctacttttgataggttgagccttcagtcaatgcttgcccaccaaacgggtaatctttccctggttgctggcattgtggcagaacttgtgaatggaaatgcagacatggctggagagcttcaaggtgaagcattgatgcataaaacatacgcggcacgcttaatgggtggggaggcatcagcccctgcagctgctacttcagtcttgagatttatggtcgatttggcaaaaatgtgcccccctttcactgctatttgcaaacgagcagagtttctagaaagctgtggtgacctatatttttcttgtgtcagagcggctcatgctgtgaagatggcaaaggaactttcttcaaagacagaagagaagaactcaaatgattttgatgatacttgtatttcacagaacactagcttacctcatgaacaggatcagtccgccaaaacctccatgagtgctggaagcttccctcctgctcaagtaagtacaagttctgaagatacagctgtccgactgaattctgtgactgatgagaaagcagagatcaaggtttgtacatctcaggaggaattgaataaatctgtgcaagatgatgcacaagctattcagagcctaaatggcgacaatgctgaccagatgtctgctacttccagcatggatgaatctagcttctttaacaagaaagtcaggcccgagcccattaaaccaccagattcgcagagttctgcttcttttaccatgcttgattctccaaatttatccgaaaagtccatctctagagttccaatcagtccttcgccagttgtagcattgacatcgtggcttggaagtgcaggccataatgaatccagatctcccttagtcgccagtccttccgtggattattctgtgactagtactgaattcgatcaatcttcggaggtgaagaccacttctcaggggatttctattgcaaataccttttttgcagttactccaaagctgcttcttgaaatggatgattctggttatggaggtggtccttgttccgccggagcaactgctgttttagattttattgcagaagttctttccgagtttgtgactgagcaaataaaatcatcacagattatagagggcatcttggaaagtgtccccctatatgttgatgcagattccgtattagtattccagggtttgtgcctgagcagactgatgaactttctggaaagacgtctcttgcgtgatgacgaagaagatgagaaaaagctggataaaggtcgttggtcctcaaatttggattcattatgctggatgatagtggatcgtgcatatatgggtgcttttcctcaaccagctgctgtactgaggaccctcgagttcttattgtctatggtacaattggcaaataaagatggccgaattgaagaagctactcctagtggaaagggtctcttatctattggaagagggagtcggcaacttgatgcatatatatattcaattcttaaaaatacaaatcgtatgatattgtattgctttctgccaacattcttggctgcaattggagaagatgatctcctttcaagtgtaggtttgctaattgaacccaagaagagagtatccccaaactcttcgggagataatttagggattgatatctgcacagtcctgcagttattagttgctcacaggcgaattatgttctgtcccagcaatatggataccgacataaactgttgtctttgtgtaaatttgatctctcttcttcgagaccaacgacagagcgtacggaacatggcagttgatattgtcaagtacctcctggtgtatcgcaagtcagctctagaagatttgcttgtctctaaaccaaaccaaggacagcaccttgatgtactacatggtgggtttgacaagttattgactggaagtttatctgatttctttgagtggcttcaaaactctgaacaggttgtggaaaaagtactagagcagtgtgcttccattatgtgggtacagtatataactggatctgctaaatttcctggcgtgagaataaaagctatggaaggtcgtcgtaagagagaaatggggagaaaatcaaaggatacatcaaagttagattcaaagcactgggagcaggtgaatgaacgaagatatgctctggaattggtacgggatgcaatgtctactgagctgagagttgtccgtcaagacaagtatggatgggttctgcatgctgagagtgagtggcaaacccatcttcaacaacttgttcatgagcgcggaatattcccaatgcgaaaatcctctgttccagaggatccggactggcaactttgtccaattgaaggtccatacaggatgcggaaaaagcttgatcggtgcaaattgaaaattgataccatccaaaacattcttgatggacaatttgaagtagctgaagcagagcttgtcaaagccagaaatgagaacgatccaggctcttctgataatgattctgaaccgttctttcaactctttcctgataatgccaaacagaatggtcttgacagagagctgtatgatgaatcattttataaagaaccagataatgtcaaagaggttgcttctgttaggaatgagtggagtgatgatagaactagtagtataaatgaagcaagtctacactctgcacttgagtttggtggtaagtctagttcagggtctcttcccatagatgagagtatacaaggaagatctgacctaggatctccatggcaatcctcttctgcaagaactgatgatgtcaaagttacagatgataaaccagacaaggaactccatgacaatggagaatacctaatcagaccttatctgcaaccttttgaaaggatacgatttcgatataactgtgaacgagttgtaggccttgacaaacatgatggcatatttttgataggcgagctctctttgtatgtgattgagaattttttcattgatgaatctgggtgcatttgtgaaaaggaattcgaagatgacctctctattattgatcaggctctgggggtaaagaaggatgttactggcagtatggatttccagtccaagtcaacttcatcttggggcacagctgttaagtcctgggttgggggaagagcatgggcctataatggtggtgcatggggaaaggagaaagtgtgtactggtggcaacctgcctcacccttggcacatgtggaaacttgacagtgttcatgaaatgttgaagcgtgattaccagctgcgtcctgttgctgttgagatatttagcatggatggatgtaatgatctcctggtgttccacaaaaaggagagggaggaggtttttaagaatctagtggccatgaatcttcccaggaatagcatgttggacacaaccatttcaggatcatcaaaacaagaaagcaacgagggtagccgtctatttaagacggtggctaaatccttttcaaaaaggtggcaaaatggagaaataagcaattttcagtacctcatgcatctcaataccttggcaggacgtggatacagtgatcttacccaatatccagtgtttccatgggttttgtcagattatgagagtgaaaatctggacttattgaatccaaaaacatttcgcagacttgaaaaaccgatgggttgccaaacaccagagggtgaagaagaattccggaaaagatatgagagctgggatgatccagaggtaccaaaatttcattatggttcacattattcaagtgctgggattgtcctcttctatcttctccgcctaccaccattcagtgctgagaatcagaagctacagggaggtcaatttgatcatgctgatcgtcttttcaatagtgttggagatacttggttaagtgcagctggaaagggaaacacatcagatgtgaaagagttgattccagaatttttctacatgccagaattcctggaaaatcgtttcaatctggatttgggagagaaacagtcgggagagaaggttggtgatgttggtttacctccttgggctaaaggcagtgttagggagttcatcagaaagcatagggaggcactggaatctgattatgtttcagaaaacttgcaccattggatagatctcatctttggatataaacaaagagggaaggcggctgaggaagctgtgaatgtcttttatcactacacatatgagggcagtgtggacatcgactcagttacagatcctgccatgaaagcctcaattctagcacaaattaatcattttgggcagacacccaaacagttatttctcaaaccccatgtcaaaaggcaggttgacagaaggcttcctcatccactcaagtactcgaaccatcttgttccgcatgagatccgcaagactacgtcttccataactcagattgttactgtcaatgagaaaatcctagtggcaggaacaaattgtttgctaaaaccaagaacatataccaagtacgtcgcgggggggtttcctgatcgtagcttgagaattatgagttatgatcaagatcgactggtctccacacatgagaatcttcatgggggaaaccagattcagtgcactggtgtgagccatgatggtcagattctggtgactggggctgatgatggcctagtttctgtttggagaatcagcaagtatggtccccgtgtcatgagacgcttacagctggagaaggcactttgtgcccacacatccaaaatcacatgccttcatgttagccagccttacatgctgattgtgagtggatcagatgactgcactgtcgttatatgggatctcagctccttggtttttgttaggcagctccctgagttcccaacaccgatatctgcaatttatgtgaatgatttgactggggatattgtgacggcagctgggattttgcttgctgtttggagcattaatggggactgccttgcaatggttaacacatcccaactgccttctgattcaattctttccgtgacaagcagttcatattctgattggctggatacaaactggtttgtaacgggtcatcagagtggggctgttaaggtgtggcaaatggtgcaccactccaaccgtgagagttcccaacagaagtcaactagcaatggaacggttggtttaaatctcagtgataaggctccagagtacaagttggtgctccacaaggtactgaagtatcataagcatcctgttactgcccttcaccttacggttgacctaaggcagttactaagtggtgattctggcgggcatttgctttcatggacactgcaagatgagagcttgaaagctattcaggggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006996 GO:0007033 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009825 GO:0009845 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010154 GO:0016043 GO:0016049 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0032989 GO:0032991 GO:0033554 GO:0033962 GO:0033993 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051049 GO:0051716 GO:0060341 GO:0061458 GO:0065003 GO:0065007 GO:0070925 GO:0071214 GO:0071470 GO:0071472 GO:0071826 GO:0071840 GO:0080001 GO:0090351 GO:0090558 GO:0090626 GO:0097305 GO:0104004 GO:1901700 GO:1903335 GO:1904580 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach Laminin_G_3 PH_BEACH WD40

Protein Analysis

3596

Amino Acids

400.17

Weight (kDa)

5.68

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm_4	PF23295	777 - 991	4.6e-06	Armadillo-like repeats
PH_BEACH	PF14844	2894 - 2943	5.1e-07	PH domain associated with Beige/BEACH
Beach	PF02138	2982 - 3261	6e-120	Beige/BEACH domain
WD40_CDC20-Fz	PF24807	3286 - 3449	3.4e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	3314 - 3517	1.1e-15	WDR5 beta-propeller domain
NBCH_WD40	PF20426	3314 - 3476	2.3e-12	Neurobeachin beta propeller domain
WD40_Prp19	PF24814	3314 - 3463	4e-10	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	3314 - 3446	3.8e-11	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	3315 - 3429	6.9e-06	Echinoderm microtubule-associated protein second beta-propeller
WDR55	PF24796	3330 - 3515	2.6e-06	WDR55
Beta-prop_TEP1_2nd	PF25047	3337 - 3478	1.2e-08	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	3346 - 3514	1.8e-12	WDR3 first beta-propeller domain
WD40	PF00400	3390 - 3424	5.2e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03060 AT1G03060 AT1G03060 AT1G03060 AT4G02660 AT4G02660 AT4G02660
fragaria_vesca	FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920 FvH4_2g22920
malus_domestica	MD03G1257800.v1.1 MD11G1278500.v1.1
prunus_persica	Prupe.8G234500_v2.0.a1 Prupe.8G234500_v2.0.a1
pyrus_communis	pycom03g20420 pycom11g24600
rosa_chinensis	RchiOBHm_Chr6g0289881
rosa_laevigata	RLG00000012262
rosa_multiflora	Rmu_ssc0000314.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177500
rosa_rugosa	Rorug06G0207500 Rorug06G0207600 Rorug06G0207700 Rorug06G0207800 Rorug06G0207900
rosa_samantha	Rh6AG319100 Rh6BG326100 Rh6CG332000 Rh6DG317600
rosa_wichuraiana	Rw6G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2588, 8052
AarI	CACCTGC	2 cut(s)	3531, 7603
AasI	GACNNNNNNGTC	2 cut(s)	4510, 10256
AatII	GACGTC	2 cut(s)	4180, 6709
Acc16I	TGCGCA	1 cut(s)	4623
Acc36I	ACCTGC	5 cut(s)	3531, 3679, 7603, 8676, 9775
Acc65I	GGTACC	2 cut(s)	4070, 9193
AccB1I	GGYRCC	2 cut(s)	4070, 9193
AccB7I	CCANNNNNTGG	5 cut(s)	751, 3272, 4172, 4241, 7482
AccBSI	CCGCTC	3 cut(s)	3391, 3750, 5810
AccI	GTMKAC	5 cut(s)	2499, 4496, 7661, 8137, 8200
AccII	CGCG	4 cut(s)	1683, 5648, 7758, 9953
AccIII	TCCGGA	2 cut(s)	7798, 9159
AcoI	YGGCCR	2 cut(s)	6889, 8832
AcyI	GRCGYC	3 cut(s)	2753, 4177, 6706
AdeI	CACNNNGTG	1 cut(s)	10178
AflII	CTTAAG	1 cut(s)	20
AflIII	ACRYGT	3 cut(s)	1464, 4978, 8685
AhdI	GACNNNNNGTC	1 cut(s)	6130
AhlI	ACTAGT	3 cut(s)	850, 6386, 8114
AjiI	CACGTC	2 cut(s)	1465, 9011
AjuI	GAANNNNNNNTTGG	4 cut(s)	6271, 6303, 8843, 8875
AleI	CACNNNNGTG	2 cut(s)	1721, 10058
Alw21I	GWGCWC	6 cut(s)	3777, 4327, 8421, 10055, 10551, 10647
Alw44I	GTGCAC	2 cut(s)	10051, 10547
AlwNI	CAGNNNCTG	7 cut(s)	92, 3272, 5681, 6833, 8515, 9698, 10081
Ama87I	CYCGRG	6 cut(s)	1703, 2197, 5278, 5304, 6185, 6848
Aor13HI	TCCGGA	2 cut(s)	7798, 9159
ApaLI	GTGCAC	2 cut(s)	10051, 10547
ArsI	GACNNNNNNTTYG	2 cut(s)	9759, 9791
AseI	ATTAAT	2 cut(s)	9729, 10398
Asp700I	GAANNNNTTC	4 cut(s)	612, 1506, 3409, 8444
Asp718I	GGTACC	2 cut(s)	4070, 9193
AspA2I	CCTAGG	2 cut(s)	2018, 8218
AspLEI	GCGC	6 cut(s)	760, 1683, 2373, 4624, 4848, 7758
AsuC2I	CCSGG	3 cut(s)	4370, 5305, 5306
AsuII	TTCGAA	5 cut(s)	2673, 3070, 3359, 5074, 8484
AvaI	CYCGRG	6 cut(s)	1703, 2197, 5278, 5304, 6185, 6848
AvaII	GGWCC	8 cut(s)	1229, 3702, 3745, 6512, 6759, 6843, 7826, 10136
AvrII	CCTAGG	2 cut(s)	2018, 8218
AxyI	CCTNAGG	4 cut(s)	1074, 2207, 3781, 10706
BaeGI	GKGCMC	5 cut(s)	5735, 8582, 10055, 10183, 10551
BaeI	ACNNNNGTAYC	6 cut(s)	5985, 6018, 10646, 10646, 10679, 10679
BalI	TGGCCA	1 cut(s)	8834
BamHI	GGATCC	2 cut(s)	4592, 7795
BanI	GGYRCC	2 cut(s)	4070, 9193
BanII	GRGCYC	4 cut(s)	2996, 3831, 6192, 8421
BarI	GAAGNNNNNNTAC	4 cut(s)	8121, 8153, 8711, 8743
BauI	CACGAG	3 cut(s)	2907, 3386, 3751
BbsI	GAAGAC	7 cut(s)	820, 896, 3333, 4172, 4956, 6425, 9852
Bbv12I	GWGCWC	6 cut(s)	3777, 4327, 8421, 10055, 10551, 10647
BbvCI	CCTCAGC	1 cut(s)	9627
BceAI	ACGGC	4 cut(s)	172, 4833, 8895, 10380
BcgI	CGANNNNNNTGC	6 cut(s)	798, 832, 4601, 4635, 6291, 6325
BciVI	GTATCC	7 cut(s)	4367, 7105, 7189, 7573, 8340, 9008, 10483
BclI	TGATCA	4 cut(s)	2226, 8506, 9307, 9994
BcnI	CCSGG	3 cut(s)	4370, 5305, 5306
BcuI	ACTAGT	3 cut(s)	850, 6386, 8114
BfrI	CTTAAG	1 cut(s)	20
BfuAI	ACCTGC	5 cut(s)	3531, 3679, 7603, 8676, 9775
BfuI	GTATCC	7 cut(s)	4367, 7105, 7189, 7573, 8340, 9008, 10483
BglI	GCCNNNNNGGC	2 cut(s)	3376, 6111
BglII	AGATCT	6 cut(s)	1199, 3254, 3844, 6344, 8210, 9589
BlnI	CCTAGG	2 cut(s)	2018, 8218
BmcAI	AGTACT	3 cut(s)	6391, 7458, 9818
Bme18I	GGWCC	8 cut(s)	1229, 3702, 3745, 6512, 6759, 6843, 7826, 10136
BmeRI	GACNNNNNGTC	1 cut(s)	6130
BmeT110I	CYCGRG	6 cut(s)	1703, 2197, 5278, 5304, 6185, 6848
BmgBI	CACGTC	2 cut(s)	1465, 9011
BmrI	ACTGGG	3 cut(s)	7615, 10098, 10359
BmuI	ACTGGG	3 cut(s)	7615, 10098, 10359
BpiI	GAAGAC	7 cut(s)	820, 896, 3333, 4172, 4956, 6425, 9852
BplI	GAGNNNNNCTC	2 cut(s)	5849, 5881
BpmI	CTGGAG	9 cut(s)	1398, 1970, 2562, 3249, 4814, 5108, 5628, 10184, 10611
Bpu10I	CCTNAGC	5 cut(s)	1094, 1737, 2865, 6677, 9627
Bpu14I	TTCGAA	5 cut(s)	2673, 3070, 3359, 5074, 8484
BpuMI	CCSGG	3 cut(s)	4370, 5305, 5306
BsaBI	GATNNNNATC	5 cut(s)	993, 2190, 4194, 7130, 9999
BsaHI	GRCGYC	3 cut(s)	2753, 4177, 6706
BsaI	GGTCTC	6 cut(s)	3244, 4673, 6929, 7239, 8184, 10015
BsaWI	WCCGGW	3 cut(s)	225, 7798, 9159
Bse21I	CCTNAGG	4 cut(s)	1074, 2207, 3781, 10706
Bse3DI	GCAATG	5 cut(s)	14, 4214, 7662, 10422, 10597
Bse8I	GATNNNNATC	5 cut(s)	993, 2190, 4194, 7130, 9999
BseAI	TCCGGA	2 cut(s)	7798, 9159
BseJI	GATNNNNATC	5 cut(s)	993, 2190, 4194, 7130, 9999
BseMI	GCAATG	5 cut(s)	14, 4214, 7662, 10422, 10597
BseRI	GAGGAG	3 cut(s)	3548, 4589, 8825
BseSI	GKGCMC	5 cut(s)	5735, 8582, 10055, 10183, 10551
BseYI	CCCAGC	4 cut(s)	7184, 9177, 9230, 10370
Bsh1236I	CGCG	4 cut(s)	1683, 5648, 7758, 9953
Bsh1285I	CGRYCG	1 cut(s)	1450
BshNI	GGYRCC	2 cut(s)	4070, 9193
BsiEI	CGRYCG	1 cut(s)	1450
BsiHKAI	GWGCWC	6 cut(s)	3777, 4327, 8421, 10055, 10551, 10647
BsiHKCI	CYCGRG	6 cut(s)	1703, 2197, 5278, 5304, 6185, 6848
BsiSI	CCGG	6 cut(s)	226, 4369, 5305, 6525, 7799, 9160
BsiWI	CGTACG	1 cut(s)	7261
BsmBI	CGTCTC	2 cut(s)	6713, 10144
BsmI	GAATGC	2 cut(s)	1731, 3078
Bso31I	GGTCTC	6 cut(s)	3244, 4673, 6929, 7239, 8184, 10015
BsoBI	CYCGRG	6 cut(s)	1703, 2197, 5278, 5304, 6185, 6848
Bsp119I	TTCGAA	5 cut(s)	2673, 3070, 3359, 5074, 8484
Bsp13I	TCCGGA	2 cut(s)	7798, 9159
Bsp1407I	TGTACA	5 cut(s)	2811, 3562, 3801, 4076, 6047
Bsp19I	CCATGG	4 cut(s)	1117, 5052, 8228, 9047
BspEI	TCCGGA	2 cut(s)	7798, 9159
BspFNI	CGCG	4 cut(s)	1683, 5648, 7758, 9953
BspHI	TCATGA	6 cut(s)	637, 5220, 5914, 7750, 8707, 10146
BspMAI	CTGCAG	6 cut(s)	2479, 2874, 4035, 4141, 5686, 7149
BspMI	ACCTGC	5 cut(s)	3531, 3679, 7603, 8676, 9775
BspQI	GCTCTTC	6 cut(s)	156, 364, 3836, 4332, 7963, 8602
BspT104I	TTCGAA	5 cut(s)	2673, 3070, 3359, 5074, 8484
BspT107I	GGYRCC	2 cut(s)	4070, 9193
BspTI	CTTAAG	1 cut(s)	20
BspTNI	GGTCTC	6 cut(s)	3244, 4673, 6929, 7239, 8184, 10015
BsrBI	CCGCTC	3 cut(s)	3391, 3750, 5810
BsrDI	GCAATG	5 cut(s)	14, 4214, 7662, 10422, 10597
BsrGI	TGTACA	5 cut(s)	2811, 3562, 3801, 4076, 6047
BssNAI	GTATAC	2 cut(s)	4497, 8201
BssNI	GRCGYC	3 cut(s)	2753, 4177, 6706
BssSI	CACGAG	3 cut(s)	2907, 3386, 3751
Bst1107I	GTATAC	2 cut(s)	4497, 8201
Bst2BI	CACGAG	3 cut(s)	2907, 3386, 3751
BstACI	GRCGYC	3 cut(s)	2753, 4177, 6706
BstAFI	CTTAAG	1 cut(s)	20
BstAPI	GCANNNNNTGC	3 cut(s)	3501, 10178, 10546
BstAUI	TGTACA	5 cut(s)	2811, 3562, 3801, 4076, 6047
BstBI	TTCGAA	5 cut(s)	2673, 3070, 3359, 5074, 8484
BstDSI	CCRYGG	6 cut(s)	1117, 5052, 5445, 6369, 8228, 9047
BstEII	GGTNACC	1 cut(s)	5783
BstENI	CCTNNNNNAGG	1 cut(s)	3155
BstFNI	CGCG	4 cut(s)	1683, 5648, 7758, 9953
BstHHI	GCGC	6 cut(s)	760, 1683, 2373, 4624, 4848, 7758
BstMCI	CGRYCG	1 cut(s)	1450
BstPI	GGTNACC	1 cut(s)	5783
BstSLI	GKGCMC	5 cut(s)	5735, 8582, 10055, 10183, 10551
BstUI	CGCG	4 cut(s)	1683, 5648, 7758, 9953
BstV2I	GAAGAC	7 cut(s)	820, 896, 3333, 4172, 4956, 6425, 9852
BstXI	CCANNNNNNTGG	4 cut(s)	2465, 3875, 7192, 8303
BstZ17I	GTATAC	2 cut(s)	4497, 8201
Bsu36I	CCTNAGG	4 cut(s)	1074, 2207, 3781, 10706
BsuI	GTATCC	7 cut(s)	4367, 7105, 7189, 7573, 8340, 9008, 10483
BtgI	CCRYGG	6 cut(s)	1117, 5052, 5445, 6369, 8228, 9047
BtgZI	GCGATG	1 cut(s)	2177
BtrI	CACGTC	2 cut(s)	1465, 9011
BveI	ACCTGC	5 cut(s)	3531, 3679, 7603, 8676, 9775
CaiI	CAGNNNCTG	7 cut(s)	92, 3272, 5681, 6833, 8515, 9698, 10081
CciI	TCATGA	6 cut(s)	637, 5220, 5914, 7750, 8707, 10146
CfoI	GCGC	6 cut(s)	760, 1683, 2373, 4624, 4848, 7758
Cfr9I	CCCGGG	1 cut(s)	5304
CseI	GACGC	4 cut(s)	2742, 4388, 8726, 10161
CspCI	CAANNNNNGTGG	2 cut(s)	2688, 2723
DraI	TTTAAA	4 cut(s)	1582, 1695, 1794, 10608
DraIII	CACNNNGTG	1 cut(s)	10178
DrdI	GACNNNNNNGTC	2 cut(s)	4510, 10256
DriI	GACNNNNNGTC	1 cut(s)	6130
DseDI	GACNNNNNNGTC	2 cut(s)	4510, 10256
EaeI	YGGCCR	2 cut(s)	6889, 8832
Eam1105I	GACNNNNNGTC	1 cut(s)	6130
EciI	GGCGGA	3 cut(s)	5920, 6511, 9245
Ecl136II	GAGCTC	1 cut(s)	8419
Eco147I	AGGCCT	2 cut(s)	1072, 8382
Eco24I	GRGCYC	4 cut(s)	2996, 3831, 6192, 8421
Eco31I	GGTCTC	6 cut(s)	3244, 4673, 6929, 7239, 8184, 10015
Eco32I	GATATC	3 cut(s)	1264, 7132, 10323
Eco47I	GGWCC	8 cut(s)	1229, 3702, 3745, 6512, 6759, 6843, 7826, 10136
Eco53kI	GAGCTC	1 cut(s)	8419
Eco81I	CCTNAGG	4 cut(s)	1074, 2207, 3781, 10706
Eco88I	CYCGRG	6 cut(s)	1703, 2197, 5278, 5304, 6185, 6848
Eco91I	GGTNACC	1 cut(s)	5783
EcoICRI	GAGCTC	1 cut(s)	8419
EcoNI	CCTNNNNNAGG	1 cut(s)	3155
EcoO109I	RGGNCCY	4 cut(s)	524, 2471, 3702, 6843
EcoO65I	GGTNACC	1 cut(s)	5783
EcoRI	GAATTC	6 cut(s)	3678, 6010, 6395, 8480, 9155, 9419
EcoRV	GATATC	3 cut(s)	1264, 7132, 10323
EcoT22I	ATGCAT	4 cut(s)	1240, 5637, 6964, 8991
EcoT38I	GRGCYC	4 cut(s)	2996, 3831, 6192, 8421
Esp3I	CGTCTC	2 cut(s)	6713, 10144
FauI	CCCGC	2 cut(s)	9946, 10727
FauNDI	CATATG	2 cut(s)	1404, 9661
FbaI	TGATCA	4 cut(s)	2226, 8506, 9307, 9994
FblI	GTMKAC	5 cut(s)	2499, 4496, 7661, 8137, 8200
FriOI	GRGCYC	4 cut(s)	2996, 3831, 6192, 8421
FspI	TGCGCA	1 cut(s)	4623
GlaI	GCGC	6 cut(s)	759, 1682, 2372, 4623, 4847, 7757
GsaI	CCCAGC	4 cut(s)	7188, 9181, 9234, 10374
GsuI	CTGGAG	9 cut(s)	1398, 1970, 2562, 3249, 4814, 5108, 5628, 10184, 10611
HapII	CCGG	6 cut(s)	226, 4369, 5305, 6525, 7799, 9160
HgaI	GACGC	4 cut(s)	2742, 4388, 8726, 10161
HhaI	GCGC	6 cut(s)	760, 1683, 2373, 4624, 4848, 7758
Hin1I	GRCGYC	3 cut(s)	2753, 4177, 6706
Hin6I	GCGC	6 cut(s)	758, 1681, 2371, 4622, 4846, 7756
HinP1I	GCGC	6 cut(s)	758, 1681, 2371, 4622, 4846, 7756
HincII	GTYRAC	8 cut(s)	498, 822, 3735, 8565, 9790, 10423, 10584, 10702
HindII	GTYRAC	8 cut(s)	498, 822, 3735, 8565, 9790, 10423, 10584, 10702
HindIII	AAGCTT	8 cut(s)	1823, 2045, 3944, 4049, 4464, 4755, 5956, 7847
HpaI	GTTAAC	1 cut(s)	10423
HpaII	CCGG	6 cut(s)	226, 4369, 5305, 6525, 7799, 9160
Hpy99I	CGWCG	3 cut(s)	696, 7551, 9953
HpyCH4IV	ACGT	8 cut(s)	312, 1464, 4177, 4888, 6706, 9010, 9857, 9948
HpySE526I	ACGT	8 cut(s)	312, 1464, 4177, 4888, 6706, 9010, 9857, 9948
Hsp92I	GRCGYC	3 cut(s)	2753, 4177, 6706
HspAI	GCGC	6 cut(s)	758, 1681, 2371, 4622, 4846, 7756
KflI	GGGWCCC	1 cut(s)	3702
Kpn2I	TCCGGA	2 cut(s)	7798, 9159
KpnI	GGTACC	2 cut(s)	4074, 9197
Ksp22I	TGATCA	4 cut(s)	2226, 8506, 9307, 9994
KspAI	GTTAAC	1 cut(s)	10423
LguI	GCTCTTC	6 cut(s)	156, 364, 3836, 4332, 7963, 8602
MaeII	ACGT	8 cut(s)	312, 1464, 4177, 4888, 6706, 9010, 9857, 9948
MbiI	CCGCTC	3 cut(s)	3391, 3750, 5810
MfeI	CAATTG	4 cut(s)	2271, 6872, 7035, 7818
MlsI	TGGCCA	1 cut(s)	8834
MluNI	TGGCCA	1 cut(s)	8834
MmeI	TCCRAC	9 cut(s)	1869, 3109, 4570, 4697, 5451, 6028, 8841, 9316, 10581
Mox20I	TGGCCA	1 cut(s)	8834
Mph1103I	ATGCAT	4 cut(s)	1240, 5637, 6964, 8991
MroI	TCCGGA	2 cut(s)	7798, 9159
MroXI	GAANNNNTTC	4 cut(s)	612, 1506, 3409, 8444
MscI	TGGCCA	1 cut(s)	8834
MslI	CAYNNNNRTG	7 cut(s)	882, 1721, 2507, 7362, 8301, 10058, 10518
Msp20I	TGGCCA	1 cut(s)	8834
MspCI	CTTAAG	1 cut(s)	20
MspI	CCGG	6 cut(s)	226, 4369, 5305, 6525, 7799, 9160
MunI	CAATTG	4 cut(s)	2271, 6872, 7035, 7818
Mva1269I	GAATGC	2 cut(s)	1731, 3078
MvnI	CGCG	4 cut(s)	1683, 5648, 7758, 9953
NciI	CCSGG	3 cut(s)	4370, 5305, 5306
NcoI	CCATGG	4 cut(s)	1117, 5052, 8228, 9047
NdeI	CATATG	2 cut(s)	1404, 9661
NsbI	TGCGCA	1 cut(s)	4623
NsiI	ATGCAT	4 cut(s)	1240, 5637, 6964, 8991
NspV	TTCGAA	5 cut(s)	2673, 3070, 3359, 5074, 8484
OliI	CACNNNNGTG	2 cut(s)	1721, 10058
PaeI	GCATGC	4 cut(s)	308, 3227, 5407, 7712
PaeR7I	CTCGAG	3 cut(s)	1703, 5278, 6848
PagI	TCATGA	6 cut(s)	637, 5220, 5914, 7750, 8707, 10146
PaqCI	CACCTGC	2 cut(s)	3531, 7603
PasI	CCCWGGG	1 cut(s)	3244
PceI	AGGCCT	2 cut(s)	1072, 8382
PciI	ACATGT	2 cut(s)	4978, 8685
PciSI	GCTCTTC	6 cut(s)	156, 364, 3836, 4332, 7963, 8602
PcsI	WCGNNNNNNNCGW	3 cut(s)	4174, 6712, 7249
PctI	GAATGC	2 cut(s)	1731, 3078
PdmI	GAANNNNTTC	4 cut(s)	612, 1506, 3409, 8444
Pfl23II	CGTACG	1 cut(s)	7261
PflFI	GACNNNGTC	1 cut(s)	9856
PflMI	CCANNNNNTGG	5 cut(s)	751, 3272, 4172, 4241, 7482
PfoI	TCCNGGA	1 cut(s)	9423
Ple19I	CGATCG	1 cut(s)	1450
PpuMI	RGGWCCY	2 cut(s)	3702, 6843
PscI	ACATGT	2 cut(s)	4978, 8685
PshBI	ATTAAT	2 cut(s)	9729, 10398
PsiI	TTATAA	2 cut(s)	2588, 8052
Psp124BI	GAGCTC	1 cut(s)	8421
Psp5II	RGGWCCY	2 cut(s)	3702, 6843
PspEI	GGTNACC	1 cut(s)	5783
PspFI	CCCAGC	4 cut(s)	7184, 9177, 9230, 10370
PspLI	CGTACG	1 cut(s)	7261
PspPPI	RGGWCCY	2 cut(s)	3702, 6843
PspXI	VCTCGAGB	2 cut(s)	5278, 6848
PsrI	GAACNNNNNNTAC	4 cut(s)	2148, 2180, 8155, 8187
PstI	CTGCAG	6 cut(s)	2479, 2874, 4035, 4141, 5686, 7149
PstNI	CAGNNNCTG	7 cut(s)	92, 3272, 5681, 6833, 8515, 9698, 10081
PsyI	GACNNNGTC	1 cut(s)	9856
PvuI	CGATCG	1 cut(s)	1450
RseI	CAYNNNNRTG	7 cut(s)	882, 1721, 2507, 7362, 8301, 10058, 10518
SacI	GAGCTC	1 cut(s)	8421
SapI	GCTCTTC	6 cut(s)	156, 364, 3836, 4332, 7963, 8602
ScaI	AGTACT	3 cut(s)	6391, 7458, 9818
Sfr274I	CTCGAG	3 cut(s)	1703, 5278, 6848
SfuI	TTCGAA	5 cut(s)	2673, 3070, 3359, 5074, 8484
SinI	GGWCC	8 cut(s)	1229, 3702, 3745, 6512, 6759, 6843, 7826, 10136
SlaI	CTCGAG	3 cut(s)	1703, 5278, 6848
SmaI	CCCGGG	1 cut(s)	5306
SmiMI	CAYNNNNRTG	7 cut(s)	882, 1721, 2507, 7362, 8301, 10058, 10518
SpeI	ACTAGT	3 cut(s)	850, 6386, 8114
SphI	GCATGC	4 cut(s)	308, 3227, 5407, 7712
SseBI	AGGCCT	2 cut(s)	1072, 8382
SspI	AATATT	3 cut(s)	561, 1587, 7764
SstI	GAGCTC	1 cut(s)	8421
StuI	AGGCCT	2 cut(s)	1072, 8382
TaiI	ACGT	8 cut(s)	315, 1467, 4180, 4891, 6709, 9013, 9860, 9951
TauI	GCSGC	6 cut(s)	260, 3370, 3394, 5651, 5813, 9626
TspGWI	ACGGA	8 cut(s)	680, 2068, 5434, 6358, 6640, 7279, 7670, 10447
TspMI	CCCGGG	1 cut(s)	5304
Tth111I	GACNNNGTC	1 cut(s)	9856
Van91I	CCANNNNNTGG	5 cut(s)	751, 3272, 4172, 4241, 7482
Vha464I	CTTAAG	1 cut(s)	20
VneI	GTGCAC	2 cut(s)	10051, 10547
VpaK11BI	GGWCC	8 cut(s)	1229, 3702, 3745, 6512, 6759, 6843, 7826, 10136
VspI	ATTAAT	2 cut(s)	9729, 10398
XagI	CCTNNNNNAGG	1 cut(s)	3155
XbaI	TCTAGA	5 cut(s)	4945, 5182, 5770, 6269, 7318
XcmI	CCANNNNNNNNNTGG	5 cut(s)	629, 3875, 4711, 6367, 9045
XhoI	CTCGAG	3 cut(s)	1703, 5278, 6848
XmaI	CCCGGG	1 cut(s)	5304
XmaJI	CCTAGG	2 cut(s)	2018, 8218
XmiI	GTMKAC	5 cut(s)	2499, 4496, 7661, 8137, 8200
XmnI	GAANNNNTTC	4 cut(s)	612, 1506, 3409, 8444
ZraI	GACGTC	2 cut(s)	4178, 6707
ZrmI	AGTACT	3 cut(s)	6391, 7458, 9818
Zsp2I	ATGCAT	4 cut(s)	1240, 5637, 6964, 8991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.