Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000356.1

Orthogroup ID

OG0007050

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1876

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 710 bp

atggcacccaacaccggcaacgggaacgtggcatcagtggagtcatcattttgccaaggaggatacgacccgctgaactggaacatggccgcggagtcgctgacggggagccacctggacgagctgaagagaatggtcggcgattaccggaagccggtggtgaagctgggaggggagcacctgacgatagggcaggtggcggcgattgccaaccacgacgctggcgtgcgggtggagctgtcggaggagaagagggctggggtgaaggccagcagtgactgggtgatggattcaatggggaagggtacagacagctacggtgtgaccaccgggttcggtgcaacatcccaccggagaaccaaaaacggtggagctcttcagagagaactgatcagattcttgaatgctggaatttttggaagcagctcagactcaaatcacaaattgcctcacaccgcaacaagggcggcgatgctagtgaggatcaacaccctcctccagggttattcggggattaggtttgaaatcctggaagccattaccaaactcatcaacagcaacatcaccccatgcctgcctcttcggggcaccatcaccgcgtcgggagacttggttcccctctcgtacattgctgggcttttgataggcaggcccaattcaaagtccatcgggcctaacggagagaccctaaccccagctgaggcctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0016598 GO:0016829 GO:0016840 GO:0016841 GO:0019438 GO:0019538 GO:0019748 GO:0019941 GO:0030163 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044550 GO:0045548 GO:0046677 GO:0046898 GO:0050896 GO:0051603 GO:0060992 GO:0071704 GO:0097305 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901654 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko01100 ko01110 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

Lyase_aromatic

Protein Analysis

236

Amino Acids

25.0

Weight (kDa)

8.55

Isoelectric Point (pI)

28.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lyase_aromatic	PF00221	61 - 230	1.8e-48	Aromatic amino acid lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10340 AT5G04230 AT5G04230
fragaria_vesca	FvH4_7g19130
malus_domestica	MD01G1106900.v1.1 MD07G1172700.v1.1
prunus_persica	Prupe.2G211800_v2.0.a1 Prupe.2G211800_v2.0.a1 Prupe.2G211800_v2.0.a1
pyrus_communis	pycom01g13360 pycom07g16720
rosa_chinensis	RchiOBHm_Chr1g0363011
rosa_laevigata	RLG00000027602
rosa_multiflora	Rmu_co8466277.1_g000001 Rmu_sc0000174.1_g000003 Rmu_ssc0000356.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293550
rosa_rugosa	Rorug01G0303500 Rorug04G0330100 Rorug04G0330200
rosa_samantha	Rh1AG312500 Rh1BG275900 Rh1CG292700 Rh1DG306500
rosa_wichuraiana	Rw1G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	184
Acc36I	ACCTGC	1 cut(s)	184
AccB1I	GGYRCC	2 cut(s)	4, 587
AccII	CGCG	2 cut(s)	92, 599
AciI	CCGC	8 cut(s)	71, 90, 92, 200, 229, 456, 467, 597
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	411
AcuI	CTGAAG	2 cut(s)	146, 362
AfaI	GTAC	2 cut(s)	307, 626
AfiI	CCNNNNNNNGG	7 cut(s)	14, 21, 154, 462, 499, 584, 700
AgsI	TTSAA	4 cut(s)	294, 403, 524, 660
AjnI	CCWGG	3 cut(s)	114, 498, 528
AloI	GAACNNNNNNTCC	2 cut(s)	597, 629
AluBI	AGCT	7 cut(s)	124, 166, 238, 315, 374, 426, 698
AluI	AGCT	7 cut(s)	124, 166, 238, 315, 374, 426, 698
Alw21I	GWGCWC	2 cut(s)	180, 376
Alw26I	GTCTC	2 cut(s)	600, 677
AlwI	GGATC	1 cut(s)	491
AlwNI	CAGNNNCTG	1 cut(s)	279
AoxI	GGCC	5 cut(s)	87, 267, 650, 671, 702
ApeKI	GCWGC	1 cut(s)	423
ApoI	RAATTY	1 cut(s)	411
AspS9I	GGNCC	2 cut(s)	651, 671
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	5 cut(s)	172, 274, 295, 556, 586
BaeGI	GKGCMC	1 cut(s)	590
BanI	GGYRCC	2 cut(s)	4, 587
BanII	GRGCYC	1 cut(s)	376
Bbv12I	GWGCWC	2 cut(s)	180, 376
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	3 cut(s)	280, 599, 674
BciT130I	CCWGG	3 cut(s)	116, 500, 530
BciVI	GTATCC	1 cut(s)	56
BclI	TGATCA	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	600, 677
BfaI	CTAG	1 cut(s)	476
BfuAI	ACCTGC	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	56
BisI	GCNGC	4 cut(s)	90, 201, 424, 468
BlsI	GCNGC	4 cut(s)	91, 202, 425, 469
Bme1390I	CCNGG	4 cut(s)	116, 331, 500, 530
BmgT120I	GGNCC	2 cut(s)	651, 671
BmiI	GGNNCC	4 cut(s)	6, 110, 589, 615
BmrFI	CCNGG	4 cut(s)	116, 331, 500, 530
BmrI	ACTGGG	1 cut(s)	289
BmsI	GCATC	2 cut(s)	41, 462
BmuI	ACTGGG	1 cut(s)	289
BpmI	CTGGAG	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	699
BpuMI	CCSGG	1 cut(s)	331
BsaI	GGTCTC	1 cut(s)	677
BsaJI	CCNNGG	3 cut(s)	55, 90, 499
BsaWI	WCCGGW	2 cut(s)	147, 351
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	7 cut(s)	14, 21, 154, 462, 499, 584, 700
Bse118I	RCCGGY	2 cut(s)	14, 154
Bse1I	ACTGG	2 cut(s)	83, 284
Bse3DI	GCAATG	1 cut(s)	627
BseBI	CCWGG	3 cut(s)	116, 500, 530
BseDI	CCNNGG	3 cut(s)	55, 90, 499
BseGI	GGATG	1 cut(s)	344
BseLI	CCNNNNNNNGG	7 cut(s)	14, 21, 154, 462, 499, 584, 700
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	441, 690
BseNI	ACTGG	2 cut(s)	83, 284
BseRI	GAGGAG	2 cut(s)	260, 485
BseSI	GKGCMC	1 cut(s)	590
BseXI	GCAGC	1 cut(s)	435
BseYI	CCCAGC	4 cut(s)	166, 257, 632, 694
Bsh1236I	CGCG	2 cut(s)	92, 599
BshFI	GGCC	5 cut(s)	89, 269, 652, 673, 704
BshNI	GGYRCC	2 cut(s)	4, 587
BsiHKAI	GWGCWC	2 cut(s)	180, 376
BsiSI	CCGG	5 cut(s)	15, 148, 155, 330, 352
BslI	CCNNNNNNNGG	7 cut(s)	14, 21, 154, 462, 499, 584, 700
BsmAI	GTCTC	2 cut(s)	600, 677
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	5 cut(s)	89, 269, 652, 673, 704
Bso31I	GGTCTC	1 cut(s)	677
Bsp1286I	GDGCHC	3 cut(s)	180, 376, 590
Bsp143I	GATC	2 cut(s)	390, 483
BspACI	CCGC	8 cut(s)	71, 90, 92, 200, 229, 456, 467, 597
BspANI	GGCC	5 cut(s)	89, 269, 652, 673, 704
BspCNI	CTCAG	2 cut(s)	440, 691
BspFNI	CGCG	2 cut(s)	92, 599
BspLI	GGNNCC	4 cut(s)	6, 110, 589, 615
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	491
BspQI	GCTCTTC	1 cut(s)	381
BspT107I	GGYRCC	2 cut(s)	4, 587
BspTNI	GGTCTC	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	627
BsrFI	RCCGGY	2 cut(s)	14, 154
BsrI	ACTGG	2 cut(s)	83, 284
BssAI	RCCGGY	2 cut(s)	14, 154
BssECI	CCNNGG	3 cut(s)	55, 90, 499
BssMI	GATC	2 cut(s)	390, 483
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	3 cut(s)	116, 500, 530
Bst4CI	ACNGT	2 cut(s)	320, 368
Bst6I	CTCTTC	4 cut(s)	122, 245, 381, 585
BstC8I	GCNNGC	5 cut(s)	223, 227, 271, 575, 650
BstDEI	CTNAG	2 cut(s)	427, 699
BstDSI	CCRYGG	1 cut(s)	90
BstENI	CCTNNNNNAGG	1 cut(s)	497
BstF5I	GGATG	1 cut(s)	344
BstFNI	CGCG	2 cut(s)	92, 599
BstKTI	GATC	2 cut(s)	393, 486
BstMAI	GTCTC	2 cut(s)	600, 677
BstMBI	GATC	2 cut(s)	390, 483
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 235, 464
BstNI	CCWGG	3 cut(s)	116, 500, 530
BstSCI	CCNGG	4 cut(s)	114, 329, 498, 528
BstSLI	GKGCMC	1 cut(s)	590
BstUI	CGCG	2 cut(s)	92, 599
BstV1I	GCAGC	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	221
BsuI	GTATCC	1 cut(s)	56
BsuRI	GGCC	5 cut(s)	89, 269, 652, 673, 704
BtgI	CCRYGG	1 cut(s)	90
BtgZI	GCGATG	1 cut(s)	485
BtsCI	GGATG	1 cut(s)	344
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	42, 280
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	5 cut(s)	223, 227, 271, 575, 650
CaiI	CAGNNNCTG	1 cut(s)	279
Cfr10I	RCCGGY	2 cut(s)	14, 154
Cfr13I	GGNCC	2 cut(s)	651, 671
Cfr42I	CCGCGG	1 cut(s)	93
CseI	GACGC	2 cut(s)	227, 588
Csp6I	GTAC	2 cut(s)	306, 625
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	2 cut(s)	85, 570
CviQI	GTAC	2 cut(s)	306, 625
DdeI	CTNAG	2 cut(s)	427, 699
DpnI	GATC	2 cut(s)	392, 485
DpnII	GATC	2 cut(s)	390, 483
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	4 cut(s)	122, 245, 381, 585
EarI	CTCTTC	4 cut(s)	122, 245, 381, 585
Ecl136II	GAGCTC	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	55
Eco147I	AGGCCT	1 cut(s)	704
Eco24I	GRGCYC	1 cut(s)	376
Eco31I	GGTCTC	1 cut(s)	677
Eco53kI	GAGCTC	1 cut(s)	374
Eco57I	CTGAAG	2 cut(s)	146, 362
EcoICRI	GAGCTC	1 cut(s)	374
EcoNI	CCTNNNNNAGG	1 cut(s)	497
EcoRII	CCWGG	3 cut(s)	114, 498, 528
EcoT14I	CCWWGG	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	2 cut(s)	88, 573
FaiI	YATR	2 cut(s)	86, 571
FatI	CATG	2 cut(s)	84, 569
FauI	CCCGC	2 cut(s)	78, 222
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	4 cut(s)	90, 201, 424, 468
FokI	GGATG	1 cut(s)	331
FriOI	GRGCYC	1 cut(s)	376
Fsp4HI	GCNGC	4 cut(s)	90, 201, 424, 468
FspBI	CTAG	1 cut(s)	476
GluI	GCNGC	4 cut(s)	90, 201, 424, 468
GsaI	CCCAGC	4 cut(s)	170, 261, 636, 698
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	5 cut(s)	89, 269, 652, 673, 704
HapII	CCGG	5 cut(s)	15, 148, 155, 330, 352
HgaI	GACGC	2 cut(s)	227, 588
Hin1II	CATG	2 cut(s)	88, 573
HinfI	GANTC	5 cut(s)	41, 95, 290, 396, 431
HpaII	CCGG	5 cut(s)	15, 148, 155, 330, 352
HphI	GGTGA	5 cut(s)	172, 274, 295, 556, 586
Hpy188I	TCNGA	4 cut(s)	244, 381, 395, 430
Hpy188III	TCNNGA	2 cut(s)	400, 603
Hpy99I	CGWCG	2 cut(s)	221, 604
HpyAV	CCTTC	2 cut(s)	259, 295
HpyCH4III	ACNGT	2 cut(s)	320, 368
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 235, 464
HpyF3I	CTNAG	2 cut(s)	427, 699
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	88, 573
Ksp22I	TGATCA	1 cut(s)	390
KspI	CCGCGG	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	390, 483
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	4 cut(s)	108, 175, 235, 371
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	2 cut(s)	41, 462
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	275, 322
MalI	GATC	2 cut(s)	392, 485
MboI	GATC	2 cut(s)	390, 483
MboII	GAAGA	4 cut(s)	139, 262, 368, 572
MhlI	GDGCHC	3 cut(s)	180, 376, 590
MluCI	AATT	3 cut(s)	411, 443, 655
MlyI	GAGTC	3 cut(s)	50, 104, 425
MmeI	TCCRAC	1 cut(s)	222
MseI	TTAA	1 cut(s)	708
MspA1I	CMGCKG	3 cut(s)	73, 92, 698
MspI	CCGG	5 cut(s)	15, 148, 155, 330, 352
MspR9I	CCNGG	4 cut(s)	116, 331, 500, 530
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	3 cut(s)	116, 500, 530
MvnI	CGCG	2 cut(s)	92, 599
MwoI	GCNNNNNNNGC	3 cut(s)	206, 235, 464
NciI	CCSGG	1 cut(s)	331
NdeII	GATC	2 cut(s)	390, 483
NlaIII	CATG	2 cut(s)	88, 573
NlaIV	GGNNCC	4 cut(s)	6, 110, 589, 615
NmuCI	GTSAC	2 cut(s)	275, 322
PaqCI	CACCTGC	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	704
PciSI	GCTCTTC	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	290, 396
PfoI	TCCNGGA	1 cut(s)	528
PkrI	GCNGC	4 cut(s)	91, 202, 425, 469
PleI	GAGTC	3 cut(s)	49, 103, 425
PpsI	GAGTC	3 cut(s)	49, 103, 425
Psp124BI	GAGCTC	1 cut(s)	376
Psp6I	CCWGG	3 cut(s)	114, 498, 528
PspFI	CCCAGC	4 cut(s)	166, 257, 632, 694
PspGI	CCWGG	3 cut(s)	114, 498, 528
PspN4I	GGNNCC	4 cut(s)	6, 110, 589, 615
PspPI	GGNCC	2 cut(s)	651, 671
PstNI	CAGNNNCTG	1 cut(s)	279
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	2 cut(s)	307, 626
RsaNI	GTAC	2 cut(s)	306, 625
SacI	GAGCTC	1 cut(s)	376
SacII	CCGCGG	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	4 cut(s)	90, 201, 424, 468
Sau3AI	GATC	2 cut(s)	390, 483
Sau96I	GGNCC	2 cut(s)	651, 671
SchI	GAGTC	3 cut(s)	50, 104, 425
ScrFI	CCNGG	4 cut(s)	116, 331, 500, 530
SduI	GDGCHC	3 cut(s)	180, 376, 590
SfaNI	GCATC	2 cut(s)	41, 462
Sfr303I	CCGCGG	1 cut(s)	93
SgrBI	CCGCGG	1 cut(s)	93
Sse9I	AATT	3 cut(s)	411, 443, 655
SseBI	AGGCCT	1 cut(s)	704
SsiI	CCGC	8 cut(s)	71, 90, 92, 200, 229, 456, 467, 597
SspMI	CTAG	1 cut(s)	476
SstI	GAGCTC	1 cut(s)	376
StuI	AGGCCT	1 cut(s)	704
StyD4I	CCNGG	4 cut(s)	114, 329, 498, 528
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	320, 368
TaiI	ACGT	1 cut(s)	30
TasI	AATT	3 cut(s)	411, 443, 655
TauI	GCSGC	3 cut(s)	92, 203, 470
TfiI	GAWTC	2 cut(s)	290, 396
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	2 cut(s)	42, 280
TseFI	GTSAC	2 cut(s)	275, 322
TseI	GCWGC	1 cut(s)	423
Tsp45I	GTSAC	2 cut(s)	275, 322
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	2 cut(s)	42, 280
XagI	CCTNNNNNAGG	1 cut(s)	497
XapI	RAATTY	1 cut(s)	411
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.