Rmu_ssc0000371.1_g000001
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000371.1
OG0002674
Physical Location & Seq
Forward (+)
1 .. 7018
7018 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1283 bp
cgctcccctacagtgactatactgatcccaaagattcaaatgctggtattctcaatcttgctacaagacttcctgaagggtcgctgaaacctgatatgggaccaaaaacatacattgcttatggattctccgaagagcttggtagaggtgattcagtgactaagctgcactgtgatatgtctgatgcggtaaatgttctgacacacacagcaacagtgaagattgagccgtggcagcacaatgccataaagaatgtgaaaagcaaacatgaagctgaagacctttgtgatctctacaatgaaaaaaatcagaaaaagggcagggttagaggaacattgttgaagaaaactcgcaacgtcctggttaagggtgctgattcttctgaatatactaaaagtggtaaagttgtggagaatgaccatctagtgtcaactctgcaggatgggaagggaaacaaactggacagagcacaatcatgtagaacttcacttttgtcagattctgtcgatccaggcatccttagatctgatgaaacagaacatcttccggaacctcttgctactactgaactaaatgaagtaaaggttgcgagtgttggtcatcagaggaatgatgtgctaaaatccacctcgccttgtgcaaatggagttgaaaaagagcaagagtgtgttcaatgttccagtgacatgatcagtggaaggcttgaagggaaagatgcttcaagggatgcaagtgtaaacacacatgcaacaaaggatttcaaaggtagtgacaagttggacattgtccatagtggtgctgtttgggacatctttcgtatccaggacactcccaagttaatagagtacctggagaaacacaaaaaagaatttcgccaccttaataatcatcctgtagattctgttgttcatcctattcacgatcagactctgtacttgaatgagagacataagaaacaactaaaggaggagttcgatgtggagccttggacatttgagcaacatcttggtgaggcagtttttattccagctggatgtcctcatcaagtgagaaatagacaatcttgtataaaggtagcacttgattttgtatctcctgagaatcttgaagtatgtctgcgattaactgaagagttccgtttactcccaaaaacccacagagccaaggaagataaattggaggtgaagaagatgacactctatgctgtaagttcagcacttcgagaagccaaaaatttgatgccggggcttggaacgtcaaatgcagagaaagatgacaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

426

Amino Acids

47.75

Weight (kDa)

6.34

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 265 - 362 3.3e-16 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 546
AciI CCGC 1 cut(s) 187
AclWI GGATC 2 cut(s) 19, 502
AcsI RAATTY 2 cut(s) 868, 1233
AcuI CTGAAG 3 cut(s) 95, 296, 1148
AfaI GTAC 2 cut(s) 847, 934
AfiI CCNNNNNNNGG 3 cut(s) 97, 366, 1249
AgsI TTSAA 9 cut(s) 38, 342, 652, 673, 706, 722, 762, 939, 1108
AjnI CCWGG 4 cut(s) 359, 510, 821, 848
AluBI AGCT 4 cut(s) 138, 165, 274, 1030
AluI AGCT 4 cut(s) 138, 165, 274, 1030
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 1 cut(s) 939
AlwI GGATC 2 cut(s) 19, 502
AlwNI CAGNNNCTG 2 cut(s) 502, 930
Aor13HI TCCGGA 1 cut(s) 546
ApeKI GCWGC 2 cut(s) 165, 234
ApoI RAATTY 2 cut(s) 868, 1233
Asp700I GAANNNNTTC 1 cut(s) 542
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 1 cut(s) 1244
AsuHPI GGTGA 3 cut(s) 160, 1021, 1194
AvaII GGWCC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 2 cut(s) 152, 246
BccI CCATC 2 cut(s) 428, 436
BceAI ACGGC 1 cut(s) 213
BciT130I CCWGG 4 cut(s) 361, 512, 823, 850
BciVI GTATCC 1 cut(s) 829
BclI TGATCA 1 cut(s) 689
BcnI CCSGG 1 cut(s) 1244
BcoDI GTCTC 1 cut(s) 939
BfaI CTAG 1 cut(s) 424
BfmI CTRYAG 3 cut(s) 9, 436, 893
BfuI GTATCC 1 cut(s) 829
BglII AGATCT 1 cut(s) 523
BisI GCNGC 2 cut(s) 166, 235
BlsI GCNGC 2 cut(s) 167, 236
Bme1390I CCNGG 5 cut(s) 361, 512, 823, 850, 1244
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 3 cut(s) 101, 551, 983
BmrFI CCNGG 5 cut(s) 361, 512, 823, 850, 1244
BmsI GCATC 5 cut(s) 174, 524, 705, 717, 1229
BpiI GAAGAC 1 cut(s) 284
BpmI CTGGAG 1 cut(s) 871
BpuMI CCSGG 1 cut(s) 1244
BsaJI CCNNGG 4 cut(s) 229, 985, 1163, 1243
BsaWI WCCGGW 1 cut(s) 546
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 366, 1249
Bse1I ACTGG 2 cut(s) 464, 680
Bse3DI GCAATG 1 cut(s) 113
BseAI TCCGGA 1 cut(s) 546
BseBI CCWGG 4 cut(s) 361, 512, 823, 850
BseDI CCNNGG 4 cut(s) 229, 985, 1163, 1243
BseGI GGATG 6 cut(s) 447, 515, 732, 888, 909, 1039
BseLI CCNNNNNNNGG 3 cut(s) 97, 366, 1249
BseMI GCAATG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 1088
BseNI ACTGG 2 cut(s) 464, 680
BseRI GAGGAG 1 cut(s) 982
BseXI GCAGC 2 cut(s) 152, 246
BsgI GTGCAG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 471
BsiSI CCGG 2 cut(s) 547, 1243
BslFI GGGAC 2 cut(s) 113, 820
BslI CCNNNNNNNGG 3 cut(s) 97, 366, 1249
BsmAI GTCTC 1 cut(s) 939
BsmFI GGGAC 2 cut(s) 113, 820
Bsp1286I GDGCHC 1 cut(s) 471
Bsp13I TCCGGA 1 cut(s) 546
Bsp143I GATC 6 cut(s) 24, 288, 507, 523, 689, 921
BspACI CCGC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 1089
BspEI TCCGGA 1 cut(s) 546
BspLI GGNNCC 3 cut(s) 101, 551, 983
BspMAI CTGCAG 1 cut(s) 440
BspPI GGATC 2 cut(s) 19, 502
BspQI GCTCTTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 113
BsrI ACTGG 2 cut(s) 464, 680
BssECI CCNNGG 4 cut(s) 229, 985, 1163, 1243
BssMI GATC 6 cut(s) 24, 288, 507, 523, 689, 921
BssT1I CCWWGG 2 cut(s) 985, 1163
Bst2UI CCWGG 4 cut(s) 361, 512, 823, 850
Bst4CI ACNGT 3 cut(s) 13, 172, 216
Bst6I CTCTTC 2 cut(s) 128, 1124
BstDEI CTNAG 3 cut(s) 161, 520, 1097
BstDSI CCRYGG 1 cut(s) 229
BstENI CCTNNNNNAGG 1 cut(s) 364
BstF5I GGATG 6 cut(s) 447, 515, 732, 888, 909, 1039
BstKTI GATC 6 cut(s) 27, 291, 510, 526, 692, 924
BstMAI GTCTC 1 cut(s) 939
BstMBI GATC 6 cut(s) 24, 288, 507, 523, 689, 921
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstNI CCWGG 4 cut(s) 361, 512, 823, 850
BstNSI RCATGY 1 cut(s) 748
BstSCI CCNGG 5 cut(s) 359, 510, 821, 848, 1242
BstSFI CTRYAG 3 cut(s) 9, 436, 893
BstV1I GCAGC 2 cut(s) 152, 246
BstV2I GAAGAC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BsuI GTATCC 1 cut(s) 829
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 6 cut(s) 447, 515, 732, 888, 909, 1039
BtsIMutI CAGTG 6 cut(s) 18, 161, 168, 221, 687, 699
CaiI CAGNNNCTG 2 cut(s) 502, 930
Cfr13I GGNCC 1 cut(s) 100
Csp6I GTAC 2 cut(s) 846, 933
CviAII CATG 4 cut(s) 268, 476, 687, 745
CviQI GTAC 2 cut(s) 846, 933
DdeI CTNAG 3 cut(s) 161, 520, 1097
DpnI GATC 6 cut(s) 26, 290, 509, 525, 691, 923
DpnII GATC 6 cut(s) 24, 288, 507, 523, 689, 921
Eam1104I CTCTTC 2 cut(s) 128, 1124
EarI CTCTTC 2 cut(s) 128, 1124
Eco130I CCWWGG 2 cut(s) 985, 1163
Eco47I GGWCC 1 cut(s) 100
Eco57I CTGAAG 3 cut(s) 95, 296, 1148
EcoNI CCTNNNNNAGG 1 cut(s) 364
EcoRII CCWGG 4 cut(s) 359, 510, 821, 848
EcoT14I CCWWGG 2 cut(s) 985, 1163
ErhI CCWWGG 2 cut(s) 985, 1163
FaeI CATG 4 cut(s) 271, 479, 690, 748
FaqI GGGAC 2 cut(s) 113, 820
FatI CATG 4 cut(s) 267, 475, 686, 744
FbaI TGATCA 1 cut(s) 689
Fnu4HI GCNGC 2 cut(s) 166, 235
FokI GGATG 6 cut(s) 454, 502, 739, 875, 896, 1046
Fsp4HI GCNGC 2 cut(s) 166, 235
FspBI CTAG 1 cut(s) 424
GluI GCNGC 2 cut(s) 166, 235
GsuI CTGGAG 1 cut(s) 871
HapII CCGG 2 cut(s) 547, 1243
Hin1II CATG 4 cut(s) 271, 479, 690, 748
HincII GTYRAC 1 cut(s) 431
HindII GTYRAC 1 cut(s) 431
HinfI GANTC 8 cut(s) 34, 125, 151, 376, 499, 898, 927, 1101
HpaII CCGG 2 cut(s) 547, 1243
HphI GGTGA 3 cut(s) 160, 1021, 1194
Hpy166II GTNNAC 3 cut(s) 431, 738, 1141
Hpy188I TCNGA 9 cut(s) 132, 183, 200, 311, 384, 498, 528, 605, 926
Hpy188III TCNNGA 6 cut(s) 73, 547, 919, 1096, 1105, 1222
Hpy8I GTNNAC 3 cut(s) 431, 738, 1141
HpyAV CCTTC 4 cut(s) 70, 441, 692, 700
HpyCH4III ACNGT 3 cut(s) 13, 172, 216
HpyCH4IV ACGT 2 cut(s) 356, 1255
HpyCH4V TGCA 6 cut(s) 168, 438, 640, 730, 748, 1264
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 3 cut(s) 161, 520, 1097
HpySE526I ACGT 2 cut(s) 356, 1255
Hsp92II CATG 4 cut(s) 271, 479, 690, 748
Kpn2I TCCGGA 1 cut(s) 546
Ksp22I TGATCA 1 cut(s) 689
Kzo9I GATC 6 cut(s) 24, 288, 507, 523, 689, 921
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 2 cut(s) 8, 981
Lsp1109I GCAGC 2 cut(s) 152, 246
LweI GCATC 5 cut(s) 174, 524, 705, 717, 1229
MaeI CTAG 1 cut(s) 424
MaeII ACGT 2 cut(s) 356, 1255
MaeIII GTNAC 4 cut(s) 13, 156, 682, 769
MalI GATC 6 cut(s) 26, 290, 509, 525, 691, 923
MboI GATC 6 cut(s) 24, 288, 507, 523, 689, 921
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 3 cut(s) 868, 1174, 1233
MlyI GAGTC 1 cut(s) 921
MmeI TCCRAC 1 cut(s) 758
MnlI CCTC 9 cut(s) 139, 322, 563, 599, 639, 960, 1005, 1049, 1173
MroI TCCGGA 1 cut(s) 546
MroXI GAANNNNTTC 1 cut(s) 542
MseI TTAA 4 cut(s) 365, 838, 881, 1123
MslI CAYNNNNRTG 3 cut(s) 474, 794, 1007
MspA1I CMGCKG 1 cut(s) 1030
MspI CCGG 2 cut(s) 547, 1243
MspR9I CCNGG 5 cut(s) 361, 512, 823, 850, 1244
MvaI CCWGG 4 cut(s) 361, 512, 823, 850
MwoI GCNNNNNNNGC 1 cut(s) 234
NciI CCSGG 1 cut(s) 1244
NdeII GATC 6 cut(s) 24, 288, 507, 523, 689, 921
NlaIII CATG 4 cut(s) 271, 479, 690, 748
NlaIV GGNNCC 3 cut(s) 101, 551, 983
NmuCI GTSAC 4 cut(s) 13, 156, 682, 769
NspI RCATGY 1 cut(s) 748
PciSI GCTCTTC 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 7 cut(s) 34, 125, 151, 376, 499, 898, 1101
PflFI GACNNNGTC 1 cut(s) 784
PfoI TCCNGGA 1 cut(s) 821
PkrI GCNGC 2 cut(s) 167, 236
PleI GAGTC 1 cut(s) 921
PpsI GAGTC 1 cut(s) 921
Psp6I CCWGG 4 cut(s) 359, 510, 821, 848
PspGI CCWGG 4 cut(s) 359, 510, 821, 848
PspN4I GGNNCC 3 cut(s) 101, 551, 983
PspPI GGNCC 1 cut(s) 100
PstI CTGCAG 1 cut(s) 440
PstNI CAGNNNCTG 2 cut(s) 502, 930
PsuI RGATCY 1 cut(s) 523
PsyI GACNNNGTC 1 cut(s) 784
PvuII CAGCTG 1 cut(s) 1030
RsaI GTAC 2 cut(s) 847, 934
RsaNI GTAC 2 cut(s) 846, 933
RseI CAYNNNNRTG 3 cut(s) 474, 794, 1007
SapI GCTCTTC 1 cut(s) 128
SaqAI TTAA 4 cut(s) 365, 838, 881, 1123
SatI GCNGC 2 cut(s) 166, 235
Sau3AI GATC 6 cut(s) 24, 288, 507, 523, 689, 921
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 1 cut(s) 921
ScrFI CCNGG 5 cut(s) 361, 512, 823, 850, 1244
SduI GDGCHC 1 cut(s) 471
SfaNI GCATC 5 cut(s) 174, 524, 705, 717, 1229
SfcI CTRYAG 3 cut(s) 9, 436, 893
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 3 cut(s) 474, 794, 1007
Sse9I AATT 3 cut(s) 868, 1174, 1233
SsiI CCGC 1 cut(s) 187
SspMI CTAG 1 cut(s) 424
StyD4I CCNGG 5 cut(s) 359, 510, 821, 848, 1242
StyI CCWWGG 2 cut(s) 985, 1163
TaaI ACNGT 3 cut(s) 13, 172, 216
TaiI ACGT 2 cut(s) 359, 1258
TaqI TCGA 3 cut(s) 506, 974, 1221
TasI AATT 3 cut(s) 868, 1174, 1233
TatI WGTACW 1 cut(s) 932
TfiI GAWTC 7 cut(s) 34, 125, 151, 376, 499, 898, 1101
Tru1I TTAA 4 cut(s) 365, 838, 881, 1123
Tru9I TTAA 4 cut(s) 365, 838, 881, 1123
TscAI CASTG 6 cut(s) 18, 161, 175, 221, 687, 699
TseFI GTSAC 4 cut(s) 13, 156, 682, 769
TseI GCWGC 2 cut(s) 165, 234
Tsp45I GTSAC 4 cut(s) 13, 156, 682, 769
TspDTI ATGAA 5 cut(s) 284, 314, 545, 590, 898
TspGWI ACGGA 1 cut(s) 1126
TspRI CASTG 6 cut(s) 18, 161, 175, 221, 687, 699
Tth111I GACNNNGTC 1 cut(s) 784
VpaK11BI GGWCC 1 cut(s) 100
XagI CCTNNNNNAGG 1 cut(s) 364
XapI RAATTY 2 cut(s) 868, 1233
XceI RCATGY 1 cut(s) 748
XmnI GAANNNNTTC 1 cut(s) 542
XspI CTAG 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.