Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000373.1

Orthogroup ID

OG0008061

Physical Location & Seq

Genomic Coordinates Reverse (-)

9288 .. 23865

Gene Structure 14578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000373.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3222 bp

atggaggacgcctacgccagatccgccaccgaggtgttggatttctttggcgtcgacccgaaacgaggtctcagtgacactcaggtttcgcaacatgctagactttatggccaaaacggggcttcgttctggaaacttgtcctgaaacagtttgatgatttgcttgttaagatattgattgttgcagcaatcgtttcttttgttctggctctaattaatggagatacaggcttaacagcatttttggagccttctgtaagtggggcttcgttctggaaacttgtcctgaaacagtttgatgatttgcttgttaagatattgattgttgcagcaatcgtttcttttgttctggctctaattaatggagatacaggcttaacagcatttttggagccttctgttatcctcacgatattggctgcaaatgctgcagtaggagtgattacagaaactaatgcagaaaaggctcttgaggagctacgcgcataccaagctgataacgcaaccgttctgcgcaatggttgcttctccatacttccagcaacagagctcgtccctggggatatcgttgaagtggctgtgggatgcaaaattccagctgatatgagaatgattgagatgctcagtaatcaattacgtgttgatcaggcaatccttacaggtttatctttacctattgaattgatgcttttgatatgtgtagtgggatgcaaaattccagccgatatgagaatgattgagatgctcagtaatcaattacgtgttgatcaggcaatccttacaggtgagagttgctctgtggagaaagaccttgaatccaccactgcaacaaatgctgtatatcaagacaagacaaatattcttttctcgggtacggtagtcgtggctggtagggctagagctgttgtagtaagagttggaactcagactgctatgggcggcatacgagactcaatgttgcaaacggaagatgaagtgacaccattgaaaaagaagctggatgaatttggtacctttttggccaaggttattgctggcatatgtgtactcgtatggattgtaaatataggtcactttcgtgaccctgctcatggtggattcttgcgtggtgcaattcattactttaagattgcagttgcacttgcagttgcagcaatccctgaaggccttcctgctgttgttacaacgttgaatgctattgtaaggtcattgccatcagttgagaccctaggctgcactacagtaatttgcagtgacaaaactgggactctgactaccaatatgatgtctgcctctaaggtttgtgtgcttcacactgtacagcacattcctgttatctcagaatacagtgtcagcggaactacatttgcacctgaaggcactatttttgacagtactggcaatcagcttgaatttccagctcaattgccttgtcttcttcacatagcaatggcttcagcactttgcaatgaatctgtcttgcaatataatccagacaaggggagctatgaaaaaattggcgagtcaactgaagtagccctccgtgtccttgcggagaagattggtcttcctggctatgattctatgccatcttctctgaatttgctaagcaagcatgaacgcgcatcttactgtaaccattattgggagaatcaacttaaaaagatttctgttgcagattttactcgtgatcgtaaaatgatgagtgtcctctgtagccgaagtcagttgcagattatgttctgcaaaggtgctccagagagcattatttctagatgcaccaatattctgtgcaatgatgatggctccactataccattaactgctaatatccgagctgagttggaatcaaggttccacagttttgcaggaaaagaaaccttaagatgcttggctcttgctttcaagcggatgccgatggatgtaccaactctctcccacaatgatgagaaggatcttacattcattgggttggtcggaatgcttgatccaccaagagaggaagtgaaaaatgctatgctttcatgcatgactgctggcatacgcgttatagttgtcaccggggataacaaatccacagccgaatccctttgccgcaagataggtgcttttgatcactttgtagatcttgctgggcactcttacaccgcaactgagtttgaagagttaccagctttgcagaaaacgatagcattgcaacggatggcattattcaccagggtcgagccttctcataaaaggatgctggttgaggccttacaacaccagaatgaagtggttgcaatgactggtgatggtgttaatgatgcacctgcactaaagaaggcagacattggaattgccatgggttcaggaacagctgttgccaagagtgcttcagatatggttttggctgatgacaattttgccactattgttgcggctgttgcagagggaagggcaatttacaataacacaaaacaattcatcagatatatgatctcttcaaatattggtgaagttgtttgtatatttgtggcagctgtacttggaatacctgatacactggcccctgtccagctgctctgggtcaacttagttactgatgggttgcctgccacagcaattggttttaataagcaagattctgatgtgatgaaggctaaacctcgtaaggttaatgaagcagttgttactggatggttgttttttcgttatttggtgattggagcttatgttggtcttgccacagttgctggatttatttggtggtttctttactctgatactggtcctaaactgccatatatggaactgataaattctgacacatgcggaatgagggagacgacttatccgtgcagtatatttagtgatcgccatccatcaactgtctccatgactgttcttgtggttgttgaaatgttcaatgctttgaataatctcagtgaaaaccaatcacttcttgttatccctccctggagcaacttatggcttgttggttcaatcatcataacgatgatccttcacgtactaatattatatgtgcatcccctctcagttcttttctctgtaacaccattatcttgggctgagtggactgttgtgctatacctttcgtttccggtcataatcattgatgaagtgctaaagttcttctcaagaaattccagtggtgtaaggttaaatttccagttaaggaggcgtgatcgactgccaagaaaggaattgcatgataagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0003824 GO:0005215 GO:0005384 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0007275 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015410 GO:0015662 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022622 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071421 GO:0072511 GO:0090662 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098791 GO:0099131 GO:0099132 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04972 ko05010 map04020 map04022 map04972 map05010

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

1073

Amino Acids

117.19

Weight (kDa)

5.73

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10130
fragaria_vesca	FvH4_2g32870 FvH4_2g32870 FvH4_2g32870
malus_domestica	MD08G1080200.v1.1 MD15G1067300.v1.1
prunus_persica	Prupe.1G421100_v2.0.a1 Prupe.1G421100_v2.0.a1 Prupe.1G421100_v2.0.a1 Prupe.1G421100_v2.0.a1 Prupe.1G421100_v2.0.a1
pyrus_communis	pycom08g06620 pycom15g06380
rosa_chinensis	RchiOBHm_Chr6g0309841
rosa_laevigata	RLG00000010530
rosa_multiflora	Rmu_ssc0000373.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159130
rosa_rugosa	Rorug06G0375200 Rorug06G0375300
rosa_samantha	Rh6AG488700 Rh6BG498200 Rh6CG503000 Rh6DG489200
rosa_wichuraiana	Rw6G042560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2320
Acc16I	TGCGCA	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	2320
Acc65I	GGTACC	1 cut(s)	1010
AccB1I	GGYRCC	1 cut(s)	1010
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	3 cut(s)	483, 1623, 2046
AciI	CCGC	9 cut(s)	24, 939, 1356, 1553, 1909, 2095, 2148, 2420, 2814
AclI	AACGTT	1 cut(s)	1187
AclWI	GGATC	4 cut(s)	15, 1962, 1982, 2995
AcoI	YGGCCR	2 cut(s)	109, 1020
AcsI	RAATTY	8 cut(s)	591, 714, 1004, 1412, 1600, 2800, 3145, 3166
AcuI	CTGAAG	5 cut(s)	1182, 1395, 1440, 1551, 2361
AcyI	GRCGYC	2 cut(s)	9, 51
AfaI	GTAC	8 cut(s)	874, 1012, 1047, 1320, 1396, 1926, 2526, 3012
AfiI	CCNNNNNNNGG	5 cut(s)	65, 118, 1091, 1499, 1645
AflII	CTTAAG	1 cut(s)	1882
AflIII	ACRYGT	3 cut(s)	637, 760, 2044
AjnI	CCWGG	4 cut(s)	556, 1570, 2216, 2957
AleI	CACNNNNGTG	2 cut(s)	32, 1077
AloI	GAACNNNNNNTCC	2 cut(s)	1838, 1870
Alw21I	GWGCWC	2 cut(s)	552, 1756
Alw26I	GTCTC	5 cut(s)	74, 942, 1217, 2819, 2878
AlwI	GGATC	4 cut(s)	15, 1962, 1982, 2995
AlwNI	CAGNNNCTG	1 cut(s)	2735
Ama87I	CYCGRG	1 cut(s)	868
AoxI	GGCC	5 cut(s)	109, 1020, 1165, 2253, 2547
ApeKI	GCWGC	8 cut(s)	185, 329, 419, 428, 1151, 1233, 2519, 2560
ApoI	RAATTY	8 cut(s)	591, 714, 1004, 1412, 1600, 2800, 3145, 3166
AseI	ATTAAT	2 cut(s)	216, 360
Asp700I	GAANNNNTTC	1 cut(s)	1167
Asp718I	GGTACC	1 cut(s)	1010
AspA2I	CCTAGG	1 cut(s)	1228
AspLEI	GCGC	3 cut(s)	485, 516, 1625
AspS9I	GGNCC	2 cut(s)	2548, 2771
AsuC2I	CCSGG	1 cut(s)	2062
AsuHPI	GGTGA	6 cut(s)	797, 2050, 2206, 2303, 2507, 2713
AvaI	CYCGRG	1 cut(s)	868
AvaII	GGWCC	1 cut(s)	2771
AvrII	CCTAGG	1 cut(s)	1228
BaeGI	GKGCMC	1 cut(s)	2139
BaeI	ACNNNNGTAYC	2 cut(s)	864, 897
BalI	TGGCCA	2 cut(s)	111, 1022
BanI	GGYRCC	1 cut(s)	1010
BanII	GRGCYC	1 cut(s)	552
BauI	CACGAG	1 cut(s)	1686
BbsI	GAAGAC	2 cut(s)	1427, 1559
Bbv12I	GWGCWC	2 cut(s)	552, 1756
BbvI	GCAGC	8 cut(s)	197, 341, 406, 415, 1163, 1220, 2531, 2547
BcgI	CGANNNNNNTGC	2 cut(s)	2176, 2210
BciT130I	CCWGG	4 cut(s)	558, 1572, 2218, 2959
BclI	TGATCA	3 cut(s)	643, 766, 2113
BcnI	CCSGG	1 cut(s)	2062
BcoDI	GTCTC	5 cut(s)	74, 942, 1217, 2819, 2878
BfaI	CTAG	4 cut(s)	99, 897, 1229, 1773
BfmI	CTRYAG	3 cut(s)	429, 1239, 1714
BfrI	CTTAAG	1 cut(s)	1882
BfuAI	ACCTGC	1 cut(s)	2320
BglII	AGATCT	1 cut(s)	2125
BlnI	CCTAGG	1 cut(s)	1228
BlpI	GCTNAGC	1 cut(s)	1607
BmcAI	AGTACT	1 cut(s)	1396
Bme1390I	CCNGG	5 cut(s)	558, 1572, 2062, 2218, 2959
Bme18I	GGWCC	1 cut(s)	2771
BmeT110I	CYCGRG	1 cut(s)	868
BmgT120I	GGNCC	2 cut(s)	2548, 2771
BmiI	GGNNCC	6 cut(s)	249, 393, 1012, 1807, 1856, 2550
BmrFI	CCNGG	5 cut(s)	558, 1572, 2062, 2218, 2959
BmrI	ACTGGG	1 cut(s)	1272
BmuI	ACTGGG	1 cut(s)	1272
BpiI	GAAGAC	2 cut(s)	1427, 1559
BplI	GAGNNNNNCTC	2 cut(s)	779, 811
BpmI	CTGGAG	2 cut(s)	1740, 2980
Bpu1102I	GCTNAGC	1 cut(s)	1607
BpuEI	CTTGAG	2 cut(s)	491, 3124
BpuMI	CCSGG	1 cut(s)	2062
BsaAI	YACGTR	3 cut(s)	638, 761, 3010
BsaBI	GATNNNNATC	1 cut(s)	2859
BsaHI	GRCGYC	2 cut(s)	9, 51
BsaI	GGTCTC	2 cut(s)	74, 1217
BsaJI	CCNNGG	9 cut(s)	30, 556, 557, 1023, 1228, 2061, 2217, 2343, 2957
BsaWI	WCCGGW	1 cut(s)	3103
BsaXI	ACNNNNNCTCC	2 cut(s)	2700, 2730
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 118, 1091, 1499, 1645
Bse1I	ACTGG	8 cut(s)	1267, 1402, 2293, 2550, 2680, 2773, 3150, 3172
Bse3DI	GCAATG	7 cut(s)	523, 1208, 1455, 1474, 1801, 2192, 2289
Bse8I	GATNNNNATC	1 cut(s)	2859
BseBI	CCWGG	4 cut(s)	558, 1572, 2218, 2959
BseDI	CCNNGG	9 cut(s)	30, 556, 557, 1023, 1228, 2061, 2217, 2343, 2957
BseJI	GATNNNNATC	1 cut(s)	2859
BseLI	CCNNNNNNNGG	5 cut(s)	65, 118, 1091, 1499, 1645
BseMI	GCAATG	7 cut(s)	523, 1208, 1455, 1474, 1801, 2192, 2289
BseNI	ACTGG	8 cut(s)	1267, 1402, 2293, 2550, 2680, 2773, 3150, 3172
BseRI	GAGGAG	1 cut(s)	488
BseSI	GKGCMC	1 cut(s)	2139
BseXI	GCAGC	8 cut(s)	197, 341, 406, 415, 1163, 1220, 2531, 2547
BseYI	CCCAGC	1 cut(s)	2132
BsgI	GTGCAG	3 cut(s)	1219, 2298, 2860
Bsh1236I	CGCG	3 cut(s)	483, 1623, 2046
BshFI	GGCC	5 cut(s)	111, 1022, 1167, 2255, 2549
BshNI	GGYRCC	1 cut(s)	1010
BsiHKAI	GWGCWC	2 cut(s)	552, 1756
BsiHKCI	CYCGRG	1 cut(s)	868
BsiSI	CCGG	2 cut(s)	2061, 3104
BslFI	GGGAC	2 cut(s)	539, 1279
BslI	CCNNNNNNNGG	5 cut(s)	65, 118, 1091, 1499, 1645
BsmAI	GTCTC	5 cut(s)	74, 942, 1217, 2819, 2878
BsmBI	CGTCTC	1 cut(s)	2819
BsmFI	GGGAC	2 cut(s)	539, 1279
BsmI	GAATGC	2 cut(s)	1198, 1986
BsnI	GGCC	5 cut(s)	111, 1022, 1167, 2255, 2549
Bso31I	GGTCTC	2 cut(s)	74, 1217
BsoBI	CYCGRG	1 cut(s)	868
Bsp1286I	GDGCHC	3 cut(s)	552, 1756, 2139
Bsp1407I	TGTACA	1 cut(s)	1318
Bsp1720I	GCTNAGC	1 cut(s)	1607
Bsp19I	CCATGG	1 cut(s)	2343
BspACI	CCGC	9 cut(s)	24, 939, 1356, 1553, 1909, 2095, 2148, 2420, 2814
BspANI	GGCC	5 cut(s)	111, 1022, 1167, 2255, 2549
BspFNI	CGCG	3 cut(s)	483, 1623, 2046
BspLI	GGNNCC	6 cut(s)	249, 393, 1012, 1807, 1856, 2550
BspMAI	CTGCAG	1 cut(s)	433
BspMI	ACCTGC	1 cut(s)	2320
BspPI	GGATC	4 cut(s)	15, 1962, 1982, 2995
BspT107I	GGYRCC	1 cut(s)	1010
BspTI	CTTAAG	1 cut(s)	1882
BspTNI	GGTCTC	2 cut(s)	74, 1217
BsrDI	GCAATG	7 cut(s)	523, 1208, 1455, 1474, 1801, 2192, 2289
BsrGI	TGTACA	1 cut(s)	1318
BsrI	ACTGG	8 cut(s)	1267, 1402, 2293, 2550, 2680, 2773, 3150, 3172
BssECI	CCNNGG	9 cut(s)	30, 556, 557, 1023, 1228, 2061, 2217, 2343, 2957
BssNI	GRCGYC	2 cut(s)	9, 51
BssSI	CACGAG	1 cut(s)	1686
BssT1I	CCWWGG	3 cut(s)	1023, 1228, 2343
Bst2BI	CACGAG	1 cut(s)	1686
Bst2UI	CCWGG	4 cut(s)	558, 1572, 2218, 2959
Bst6I	CTCTTC	2 cut(s)	2157, 2488
BstACI	GRCGYC	2 cut(s)	9, 51
BstAFI	CTTAAG	1 cut(s)	1882
BstAPI	GCANNNNNTGC	3 cut(s)	428, 522, 833
BstAUI	TGTACA	1 cut(s)	1318
BstBAI	YACGTR	3 cut(s)	638, 761, 3010
BstC8I	GCNNGC	4 cut(s)	1036, 1613, 2038, 2595
BstDSI	CCRYGG	1 cut(s)	2343
BstFNI	CGCG	3 cut(s)	483, 1623, 2046
BstHHI	GCGC	3 cut(s)	485, 516, 1625
BstMAI	GTCTC	5 cut(s)	74, 942, 1217, 2819, 2878
BstNI	CCWGG	4 cut(s)	558, 1572, 2218, 2959
BstNSI	RCATGY	2 cut(s)	98, 2814
BstSCI	CCNGG	5 cut(s)	556, 1570, 2060, 2216, 2957
BstSFI	CTRYAG	3 cut(s)	429, 1239, 1714
BstSLI	GKGCMC	1 cut(s)	2139
BstUI	CGCG	3 cut(s)	483, 1623, 2046
BstV1I	GCAGC	8 cut(s)	197, 341, 406, 415, 1163, 1220, 2531, 2547
BstV2I	GAAGAC	2 cut(s)	1427, 1559
BstX2I	RGATCY	3 cut(s)	20, 1954, 2125
BstXI	CCANNNNNNTGG	1 cut(s)	3066
BstYI	RGATCY	3 cut(s)	20, 1954, 2125
BsuRI	GGCC	5 cut(s)	111, 1022, 1167, 2255, 2549
BtgI	CCRYGG	1 cut(s)	2343
BtsI	GCAGTG	2 cut(s)	822, 1258
BtsIMutI	CAGTG	8 cut(s)	79, 822, 1258, 1314, 1354, 2543, 2932, 3157
BveI	ACCTGC	1 cut(s)	2320
Cac8I	GCNNGC	4 cut(s)	1036, 1613, 2038, 2595
CaiI	CAGNNNCTG	1 cut(s)	2735
CfoI	GCGC	3 cut(s)	485, 516, 1625
Cfr13I	GGNCC	2 cut(s)	2548, 2771
CseI	GACGC	2 cut(s)	17, 40
Csp6I	GTAC	8 cut(s)	873, 1011, 1046, 1319, 1395, 1925, 2525, 3011
CspCI	CAANNNNNGTGG	4 cut(s)	2398, 2433, 2587, 2622
CviAII	CATG	9 cut(s)	95, 1091, 1616, 2025, 2029, 2344, 2811, 2878, 3212
CviQI	GTAC	8 cut(s)	873, 1011, 1046, 1319, 1395, 1925, 2525, 3011
EaeI	YGGCCR	2 cut(s)	109, 1020
Eam1104I	CTCTTC	2 cut(s)	2157, 2488
EarI	CTCTTC	2 cut(s)	2157, 2488
EciI	GGCGGA	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	550
Eco130I	CCWWGG	3 cut(s)	1023, 1228, 2343
Eco147I	AGGCCT	2 cut(s)	1167, 2255
Eco24I	GRGCYC	1 cut(s)	552
Eco31I	GGTCTC	2 cut(s)	74, 1217
Eco32I	GATATC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	2771
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	5 cut(s)	1182, 1395, 1440, 1551, 2361
Eco88I	CYCGRG	1 cut(s)	868
EcoICRI	GAGCTC	1 cut(s)	550
EcoRII	CCWGG	4 cut(s)	556, 1570, 2216, 2957
EcoRV	GATATC	1 cut(s)	565
EcoT14I	CCWWGG	3 cut(s)	1023, 1228, 2343
EcoT22I	ATGCAT	1 cut(s)	2030
EcoT38I	GRGCYC	1 cut(s)	552
ErhI	CCWWGG	3 cut(s)	1023, 1228, 2343
Esp3I	CGTCTC	1 cut(s)	2819
FaeI	CATG	9 cut(s)	98, 1094, 1619, 2028, 2032, 2347, 2814, 2881, 3215
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FaqI	GGGAC	2 cut(s)	539, 1279
FatI	CATG	9 cut(s)	94, 1090, 1615, 2024, 2028, 2343, 2810, 2877, 3211
FauNDI	CATATG	1 cut(s)	1040
FbaI	TGATCA	3 cut(s)	643, 766, 2113
FblI	GTMKAC	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	552
FspBI	CTAG	4 cut(s)	99, 897, 1229, 1773
FspI	TGCGCA	1 cut(s)	515
GlaI	GCGC	3 cut(s)	484, 515, 1624
GsaI	CCCAGC	1 cut(s)	2136
GsuI	CTGGAG	2 cut(s)	1740, 2980
HaeIII	GGCC	5 cut(s)	111, 1022, 1167, 2255, 2549
HapII	CCGG	2 cut(s)	2061, 3104
HgaI	GACGC	2 cut(s)	17, 40
HhaI	GCGC	3 cut(s)	485, 516, 1625
Hin1I	GRCGYC	2 cut(s)	9, 51
Hin1II	CATG	9 cut(s)	98, 1094, 1619, 2028, 2032, 2347, 2814, 2881, 3215
Hin6I	GCGC	3 cut(s)	483, 514, 1623
HinP1I	GCGC	3 cut(s)	483, 514, 1623
HincII	GTYRAC	3 cut(s)	55, 1527, 2572
HindII	GTYRAC	3 cut(s)	55, 1527, 2572
HpaII	CCGG	2 cut(s)	2061, 3104
HphI	GGTGA	6 cut(s)	797, 2050, 2206, 2303, 2507, 2713
Hpy166II	GTNNAC	5 cut(s)	55, 1046, 1527, 2572, 3078
Hpy8I	GTNNAC	5 cut(s)	55, 1046, 1527, 2572, 3078
Hpy99I	CGWCG	1 cut(s)	56
HpyCH4IV	ACGT	4 cut(s)	637, 760, 1187, 3009
HpySE526I	ACGT	4 cut(s)	637, 760, 1187, 3009
Hsp92I	GRCGYC	2 cut(s)	9, 51
Hsp92II	CATG	9 cut(s)	98, 1094, 1619, 2028, 2032, 2347, 2814, 2881, 3215
HspAI	GCGC	3 cut(s)	483, 514, 1623
KpnI	GGTACC	1 cut(s)	1014
Ksp22I	TGATCA	3 cut(s)	643, 766, 2113
LmnI	GCTCC	8 cut(s)	247, 391, 475, 1503, 1759, 1811, 2708, 2961
Lsp1109I	GCAGC	8 cut(s)	197, 341, 406, 415, 1163, 1220, 2531, 2547
MaeI	CTAG	4 cut(s)	99, 897, 1229, 1773
MaeII	ACGT	4 cut(s)	637, 760, 1187, 3009
MboII	GAAGA	9 cut(s)	980, 1427, 1430, 1559, 1570, 1584, 2174, 2475, 3127
MfeI	CAATTG	2 cut(s)	1424, 2604
MflI	RGATCY	3 cut(s)	20, 1954, 2125
MhlI	GDGCHC	3 cut(s)	552, 1756, 2139
MlsI	TGGCCA	2 cut(s)	111, 1022
MluI	ACGCGT	1 cut(s)	2044
MluNI	TGGCCA	2 cut(s)	111, 1022
MlyI	GAGTC	3 cut(s)	944, 1261, 1532
MmeI	TCCRAC	4 cut(s)	18, 898, 1824, 1957
Mox20I	TGGCCA	2 cut(s)	111, 1022
Mph1103I	ATGCAT	1 cut(s)	2030
MroXI	GAANNNNTTC	1 cut(s)	1167
MscI	TGGCCA	2 cut(s)	111, 1022
MslI	CAYNNNNRTG	6 cut(s)	32, 1077, 1448, 1944, 2268, 2996
Msp20I	TGGCCA	2 cut(s)	111, 1022
MspA1I	CMGCKG	5 cut(s)	599, 1356, 2360, 2522, 2560
MspCI	CTTAAG	1 cut(s)	1882
MspI	CCGG	2 cut(s)	2061, 3104
MspR9I	CCNGG	5 cut(s)	558, 1572, 2062, 2218, 2959
MunI	CAATTG	2 cut(s)	1424, 2604
Mva1269I	GAATGC	2 cut(s)	1198, 1986
MvaI	CCWGG	4 cut(s)	558, 1572, 2218, 2959
MvnI	CGCG	3 cut(s)	483, 1623, 2046
NciI	CCSGG	1 cut(s)	2062
NcoI	CCATGG	1 cut(s)	2343
NdeI	CATATG	1 cut(s)	1040
NlaIII	CATG	9 cut(s)	98, 1094, 1619, 2028, 2032, 2347, 2814, 2881, 3215
NlaIV	GGNNCC	6 cut(s)	249, 393, 1012, 1807, 1856, 2550
NmuCI	GTSAC	6 cut(s)	74, 976, 1070, 1079, 1253, 2056
NsbI	TGCGCA	1 cut(s)	515
NsiI	ATGCAT	1 cut(s)	2030
NspI	RCATGY	2 cut(s)	98, 2814
OliI	CACNNNNGTG	2 cut(s)	32, 1077
PaqCI	CACCTGC	1 cut(s)	2320
PasI	CCCWGGG	1 cut(s)	557
PceI	AGGCCT	2 cut(s)	1167, 2255
PcsI	WCGNNNNNNNCGW	1 cut(s)	2834
PctI	GAATGC	2 cut(s)	1198, 1986
PdmI	GAANNNNTTC	1 cut(s)	1167
PfeI	GAWTC	8 cut(s)	815, 1098, 1472, 1580, 1651, 1847, 2084, 2624
PleI	GAGTC	3 cut(s)	944, 1261, 1531
PpsI	GAGTC	3 cut(s)	944, 1261, 1531
Ppu21I	YACGTR	3 cut(s)	638, 761, 3010
PshBI	ATTAAT	2 cut(s)	216, 360
Psp124BI	GAGCTC	1 cut(s)	552
Psp1406I	AACGTT	1 cut(s)	1187
Psp6I	CCWGG	4 cut(s)	556, 1570, 2216, 2957
PspFI	CCCAGC	1 cut(s)	2132
PspGI	CCWGG	4 cut(s)	556, 1570, 2216, 2957
PspN4I	GGNNCC	6 cut(s)	249, 393, 1012, 1807, 1856, 2550
PspPI	GGNCC	2 cut(s)	2548, 2771
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	2735
PsuI	RGATCY	3 cut(s)	20, 1954, 2125
PvuII	CAGCTG	4 cut(s)	599, 2360, 2522, 2560
RsaI	GTAC	8 cut(s)	874, 1012, 1047, 1320, 1396, 1926, 2526, 3012
RsaNI	GTAC	8 cut(s)	873, 1011, 1046, 1319, 1395, 1925, 2525, 3011
RseI	CAYNNNNRTG	6 cut(s)	32, 1077, 1448, 1944, 2268, 2996
SacI	GAGCTC	1 cut(s)	552
SalI	GTCGAC	1 cut(s)	53
Sau96I	GGNCC	2 cut(s)	2548, 2771
ScaI	AGTACT	1 cut(s)	1396
SchI	GAGTC	3 cut(s)	944, 1261, 1532
ScrFI	CCNGG	5 cut(s)	558, 1572, 2062, 2218, 2959
SduI	GDGCHC	3 cut(s)	552, 1756, 2139
SfcI	CTRYAG	3 cut(s)	429, 1239, 1714
SinI	GGWCC	1 cut(s)	2771
SmiMI	CAYNNNNRTG	6 cut(s)	32, 1077, 1448, 1944, 2268, 2996
SmlI	CTYRAG	3 cut(s)	470, 1882, 3139
SmoI	CTYRAG	3 cut(s)	470, 1882, 3139
SseBI	AGGCCT	2 cut(s)	1167, 2255
SsiI	CCGC	9 cut(s)	24, 939, 1356, 1553, 1909, 2095, 2148, 2420, 2814
SspI	AATATT	4 cut(s)	859, 1786, 2491, 3018
SspMI	CTAG	4 cut(s)	99, 897, 1229, 1773
SstI	GAGCTC	1 cut(s)	552
StuI	AGGCCT	2 cut(s)	1167, 2255
StyD4I	CCNGG	5 cut(s)	556, 1570, 2060, 2216, 2957
StyI	CCWWGG	3 cut(s)	1023, 1228, 2343
TaiI	ACGT	4 cut(s)	640, 763, 1190, 3012
TaqI	TCGA	3 cut(s)	54, 2223, 3190
TatI	WGTACW	4 cut(s)	1045, 1318, 1394, 2524
TauI	GCSGC	3 cut(s)	942, 2097, 2423
TfiI	GAWTC	8 cut(s)	815, 1098, 1472, 1580, 1651, 1847, 2084, 2624
TscAI	CASTG	8 cut(s)	79, 829, 1258, 1321, 1354, 2550, 2932, 3157
TseFI	GTSAC	6 cut(s)	74, 976, 1070, 1079, 1253, 2056
TseI	GCWGC	8 cut(s)	185, 329, 419, 428, 1151, 1233, 2519, 2560
Tsp45I	GTSAC	6 cut(s)	74, 976, 1070, 1079, 1253, 2056
TspGWI	ACGGA	4 cut(s)	980, 1532, 2215, 2826
TspRI	CASTG	8 cut(s)	79, 829, 1258, 1321, 1354, 2550, 2932, 3157
Vha464I	CTTAAG	1 cut(s)	1882
VpaK11BI	GGWCC	1 cut(s)	2771
VspI	ATTAAT	2 cut(s)	216, 360
XapI	RAATTY	8 cut(s)	591, 714, 1004, 1412, 1600, 2800, 3145, 3166
XbaI	TCTAGA	1 cut(s)	1772
XceI	RCATGY	2 cut(s)	98, 2814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmaJI	CCTAGG	1 cut(s)	1228
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	1167
XspI	CTAG	4 cut(s)	99, 897, 1229, 1773
ZrmI	AGTACT	1 cut(s)	1396
Zsp2I	ATGCAT	1 cut(s)	2030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.