Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008061

Physical Location & Seq

Genomic Coordinates Forward (+)

66547437 .. 66562537

Gene Structure 15101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG503000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2913 bp

ATGGAGGACGCCTACGCCAGATCCGCCACCGAGGTGTTGGATTTCTTTGGCGTGGACCCGAAACGAGGTCTCAGTGAAACTCAGGTTTCGCAACATGCTAGACTTTATGGACAAAACGTGCTTCCGGAAGAGAAAAGGGCTTCGTTCTGGAAACTTGTCCTGAAACAGTTTGATGATTTGCTTGTTAAGATATTGATTGTTGCAGCAATCGTTTCTTTTGTTCTGGCTCTAATTAATGGAGATACGGGCTTAACAGCATTTTTGGAGCCTTCTGTTATCCTCACGATATTGGCTGCAAATGCTGCAGTAGGAGTGATTACAGAAACTAATGCAGAAAAGGCTCTTGAGGAGCTACGCGCATACCAAGCTGATAACGCAACCGTTCTGCGCAATGGTTGCTTCTCCATACTTCCAGCAACAGAGCTCGTCCCTGGGGATATCGTTGAAGTGGCTGTGGGATGCAAAATTCCAGCCGATATGAGAATGATTGAGATGCTCAGTAATCAATTACGTGTTGATCAGGCAATCCTTACAGGTGAGAGTTGCTCTGTGGAGAAAGACCTTGAATCTACCACTGCAACAAATGCTGTATATCAAGACAAGACAAATATTCTTTTCTCGGGTACGGTAGTCGTGGCTGGTAGGGCTAGAGCTGTTGTAGTAAGAGTTGGAACTCAGACTGCTATGGGCGGCATACGAGACTCAATGTTGCAAACGGAAGATGAAGTGACACCATTGAAAAAGAAGCTGGATGAATTTGGTACCTTTTTGGCCAAGGTTATTGCTGGCATATGTGTACTCGTATGGATTGTAAATATAGGTCACTTTCGTGACCCTGCTCATGGTGGATTCTTGCGTGGTGCAATTCATTACTTTAAGATTGCAGTTGCACTTGCAGTTGCAGCAATCCCTGAAGGCCTTCCTGCTGTTGTTACAACTTGTTTGGCTCTTGGGACAAAACGAATGGCTAGGTTGAATGCCATTGTAAGGTCATTGCCATCAGTTGAGACCCTAGGCTGCACTACAGTAATTTGCAGTGACAAAACTGGGACTCTGACTACCAATATGATGTCTGCCTCTAAGGTTTGTGTGCTTCACACTGTACAGCACATTCCTGTTATCTCAGAATACAGTGTCAGCGGAACTACATTTGCACCTGAAGGCACTATTTTTGACAGTACTGGCAATCAGCTTGAATTTCCAGCTCAATTGCCTTGTCTTCTTCACATAGCAATGGCTTCAGCGCTTTGCAATGAATCTGTCTTGCAATATAATCCAGACAAGGGGAGCTATGAAAAAATTGGCGAGTCAACTGAAGTAGCCCTCCGTGTCCTTGCAGAGAAGATTGGTCTTCCCGGCTATGATTCTATGCCATCTTCTCTGAATTTGCTAAGCAAGCATGAACGCGCATCTTACTGTAACCATTATTGGGAGAATCAATTTAAAAAGATTTCTGTTGCAGATTTTACTCGTGATCGTAAAATGATGAGTGTCCTTTGTAGCCGAAGTCAGTTGCAGATTATGTTCTGCAAAGGTGCTCCAGAGAGCATTATTTCTAGATGCACCAATATTCTGTGCAATGATGATGGTTCCACTATACCATTAACTGCAAATATCCGAGCTGAGTTGGAATCAAGGTTCCACAGTTTTGCAGGAAAAGAAACCTTAAGATGCTTGGCTCTTGCTTTCAAGCGGATGCCGATGGATGTACCGACTCTCTCCCACAATGATGAGAAGGATCTTACATTCATTGGGTTGGTCGGAATGCTTGATCCACCAAGAGAGGAAGTGAAAAATGCTATGCTTTCATGCATGACTGCTGGCATACGCGTTATAGTTGTCACCGGGGATAACAAATCCACAGCTGAATCCCTTTGCCGCAAGATAGGTGCTTTTGATCACTTTGTAGATCTTGCTGGGCACTCTTACACCGCAACTGAGTTTGAAGAGTTACCAGCTTTGCAGAAAACGATAGCATTGCAACGGATGGCATTATTCACCAGGGTCGAGCCGTCTCATAAAAGGATGCTGGTTGAGGCCTTACAACACCAGAATGAAGTGAGTGCTTCAGATATGGTTTTGGCTGATGACAATTTTGCCACTATTGTTGCGGCTGTTGCAGAGGGAAGGGCAATTTACAATAACACAAAACAATTCATCAGATATATGATCTCTTCAAATATTGGTGAAGTTGTTTGTATATTTGTGGCAGCTGTACTTGGAATACCTGATACACTGGCCCCTGTCCAGCTGCTCTGGGTCAACTTAGTTACTGATGGGTTGCCTGCCACAGCAATTGGTTTTAATAAGCAAGATTCTGATGTGATGAAGGCTAAACCTCGTAAGGTTAATGAAGCAGTTGTTACTGGATGGTTGTTTTTTCGTTATTTGGTGATTGGAGCTTATGTTGGGCTTGCCACAGTTGCTGGATTTATTTGGTGGTTTCTTTACTCTGATACCGGTCCTAAACTGCCATATATGGAACTGATAAATTCTGACACATGCGGAATGAGGGAGACGACTTATCCGTGCAGTATATTTAGTGATCGCCATCCATCAACTGTCTCCATGACTGTTCTTGTGGTTGTTGAAATGTTCAATGCTTTGAATAATCTCAGTGAAAACCAATCACTTCTTGTTATCCCTCCCTGGAGCAACTTATGGCTTGTTGGTTCAATCATCATAACGATGATCCTTCACGTACTAATATTATATGTGCATCCCCTCTCAGTTCTTTTCTCTGTAACACCATTATCTTGGGCTGAGTGGACTGTTGTGCTATACCTTTCGTTTCCAGTTATAATCATTGATGAAGTGCTAAAGTTGTTCTCAAGAAATTCCAGTGGTGTAAGGTTAAATTTCCAGTTAAGGAGGCGTGATCGACTGCCAAGAAAGGAATTGCGTGATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0003824 GO:0005215 GO:0005384 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0007275 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015410 GO:0015662 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022622 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071421 GO:0072511 GO:0090662 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098791 GO:0099131 GO:0099132 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04972 ko05010 map04020 map04022 map04972 map05010

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

970

Amino Acids

106.67

Weight (kDa)

6.05

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	5 - 72	1.7e-19	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	122 - 235	1.8e-24	P-type ATPase actuator domain
Cation_ATPase	PF13246	409 - 596	1.6e-41	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	578 - 705	2.4e-06	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	745 - 943	1.9e-45	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10130
fragaria_vesca	FvH4_2g32870 FvH4_2g32870 FvH4_2g32870
malus_domestica	MD08G1080200.v1.1 MD15G1067300.v1.1
prunus_persica	Prupe.1G421100_v2.0.a1 Prupe.1G421100_v2.0.a1 Prupe.1G421100_v2.0.a1 Prupe.1G421100_v2.0.a1 Prupe.1G421100_v2.0.a1
pyrus_communis	pycom08g06620 pycom15g06380
rosa_chinensis	RchiOBHm_Chr6g0309841
rosa_laevigata	RLG00000010530
rosa_multiflora	Rmu_ssc0000373.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159130
rosa_rugosa	Rorug06G0375200 Rorug06G0375300
rosa_samantha	Rh6AG488700 Rh6BG498200 Rh6CG503000 Rh6DG489200
rosa_wichuraiana	Rw6G042560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2801
Acc16I	TGCGCA	1 cut(s)	389
Acc65I	GGTACC	1 cut(s)	761
AccB1I	GGYRCC	1 cut(s)	761
AccII	CGCG	3 cut(s)	357, 1407, 1830
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	8 cut(s)	24, 690, 1140, 1693, 1879, 1932, 2111, 2505
AclWI	GGATC	4 cut(s)	15, 1746, 1766, 2686
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	7 cut(s)	465, 755, 1196, 1384, 2491, 2836, 2857
AcuI	CTGAAG	5 cut(s)	933, 1179, 1224, 1335, 2052
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	8 cut(s)	625, 763, 798, 1104, 1180, 1710, 2217, 2703
AfeI	AGCGCT	1 cut(s)	1245
AfiI	CCNNNNNNNGG	5 cut(s)	65, 842, 987, 1283, 1429
AflII	CTTAAG	1 cut(s)	1666
AflIII	ACRYGT	2 cut(s)	511, 1828
AgeI	ACCGGT	1 cut(s)	2459
AjnI	CCWGG	3 cut(s)	430, 2000, 2648
AleI	CACNNNNGTG	2 cut(s)	32, 828
AloI	GAACNNNNNNTCC	2 cut(s)	1622, 1654
Alw21I	GWGCWC	2 cut(s)	426, 1540
Alw26I	GTCTC	6 cut(s)	74, 693, 1001, 2019, 2510, 2569
AlwI	GGATC	4 cut(s)	15, 1746, 1766, 2686
AlwNI	CAGNNNCTG	1 cut(s)	2426
Ama87I	CYCGRG	1 cut(s)	619
Aor13HI	TCCGGA	1 cut(s)	124
Aor51HI	AGCGCT	1 cut(s)	1245
AoxI	GGCC	4 cut(s)	771, 916, 2037, 2238
ApeKI	GCWGC	7 cut(s)	203, 293, 302, 902, 1017, 2210, 2251
ApoI	RAATTY	7 cut(s)	465, 755, 1196, 1384, 2491, 2836, 2857
AseI	ATTAAT	1 cut(s)	234
AsiGI	ACCGGT	1 cut(s)	2459
Asp700I	GAANNNNTTC	1 cut(s)	918
Asp718I	GGTACC	1 cut(s)	761
AspA2I	CCTAGG	1 cut(s)	1012
AspLEI	GCGC	4 cut(s)	359, 390, 1246, 1409
AspS9I	GGNCC	3 cut(s)	55, 2239, 2462
AsuC2I	CCSGG	2 cut(s)	1356, 1846
AsuHPI	GGTGA	5 cut(s)	548, 1834, 1990, 2198, 2404
AvaI	CYCGRG	1 cut(s)	619
AvaII	GGWCC	2 cut(s)	55, 2462
AvrII	CCTAGG	1 cut(s)	1012
BaeGI	GKGCMC	1 cut(s)	1923
BaeI	ACNNNNGTAYC	2 cut(s)	615, 648
BalI	TGGCCA	1 cut(s)	773
BanI	GGYRCC	1 cut(s)	761
BanII	GRGCYC	1 cut(s)	426
BauI	CACGAG	1 cut(s)	1470
BbsI	GAAGAC	2 cut(s)	1211, 1343
Bbv12I	GWGCWC	2 cut(s)	426, 1540
BbvI	GCAGC	7 cut(s)	215, 280, 289, 914, 1004, 2222, 2238
BccI	CCATC	9 cut(s)	1006, 1381, 1580, 1696, 1981, 2270, 2364, 2559, 2563
BceAI	ACGGC	1 cut(s)	1996
BcgI	CGANNNNNNTGC	2 cut(s)	1960, 1994
BciT130I	CCWGG	3 cut(s)	432, 2002, 2650
BclI	TGATCA	2 cut(s)	517, 1897
BcnI	CCSGG	2 cut(s)	1356, 1846
BcoDI	GTCTC	6 cut(s)	74, 693, 1001, 2019, 2510, 2569
BfaI	CTAG	5 cut(s)	99, 648, 969, 1013, 1557
BfmI	CTRYAG	2 cut(s)	303, 1023
BfoI	RGCGCY	1 cut(s)	1247
BfrI	CTTAAG	1 cut(s)	1666
BglII	AGATCT	1 cut(s)	1909
BlnI	CCTAGG	1 cut(s)	1012
BlpI	GCTNAGC	1 cut(s)	1391
BmcAI	AGTACT	1 cut(s)	1180
Bme1390I	CCNGG	5 cut(s)	432, 1356, 1846, 2002, 2650
Bme18I	GGWCC	2 cut(s)	55, 2462
BmeT110I	CYCGRG	1 cut(s)	619
BmgT120I	GGNCC	3 cut(s)	55, 2239, 2462
BmiI	GGNNCC	6 cut(s)	57, 267, 763, 1591, 1640, 2241
BmrFI	CCNGG	5 cut(s)	432, 1356, 1846, 2002, 2650
BmrI	ACTGGG	1 cut(s)	1056
BmsI	GCATC	8 cut(s)	449, 483, 1418, 1550, 1661, 1686, 2016, 2728
BmuI	ACTGGG	1 cut(s)	1056
BpiI	GAAGAC	2 cut(s)	1211, 1343
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
BpmI	CTGGAG	2 cut(s)	1524, 2671
Bpu1102I	GCTNAGC	1 cut(s)	1391
BpuEI	CTTGAG	2 cut(s)	365, 2815
BpuMI	CCSGG	2 cut(s)	1356, 1846
BsaAI	YACGTR	2 cut(s)	512, 2701
BsaBI	GATNNNNATC	1 cut(s)	2550
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	2 cut(s)	74, 1001
BsaJI	CCNNGG	8 cut(s)	30, 430, 431, 774, 1012, 1845, 2001, 2648
BsaWI	WCCGGW	2 cut(s)	124, 2459
BsaXI	ACNNNNNCTCC	2 cut(s)	2391, 2421
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 842, 987, 1283, 1429
Bse118I	RCCGGY	1 cut(s)	2459
Bse1I	ACTGG	7 cut(s)	1051, 1186, 2241, 2371, 2795, 2841, 2863
Bse3DI	GCAATG	6 cut(s)	397, 992, 1239, 1258, 1585, 1976
Bse8I	GATNNNNATC	1 cut(s)	2550
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	3 cut(s)	432, 2002, 2650
BseDI	CCNNGG	8 cut(s)	30, 430, 431, 774, 1012, 1845, 2001, 2648
BseGI	GGATG	9 cut(s)	464, 757, 1701, 1711, 1992, 2031, 2375, 2551, 2719
BseJI	GATNNNNATC	1 cut(s)	2550
BseLI	CCNNNNNNNGG	5 cut(s)	65, 842, 987, 1283, 1429
BseMI	GCAATG	6 cut(s)	397, 992, 1239, 1258, 1585, 1976
BseNI	ACTGG	7 cut(s)	1051, 1186, 2241, 2371, 2795, 2841, 2863
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	1923
BseXI	GCAGC	7 cut(s)	215, 280, 289, 914, 1004, 2222, 2238
BseYI	CCCAGC	1 cut(s)	1916
BsgI	GTGCAG	2 cut(s)	1003, 2551
Bsh1236I	CGCG	3 cut(s)	357, 1407, 1830
BshFI	GGCC	4 cut(s)	773, 918, 2039, 2240
BshNI	GGYRCC	1 cut(s)	761
BshTI	ACCGGT	1 cut(s)	2459
BsiHKAI	GWGCWC	2 cut(s)	426, 1540
BsiHKCI	CYCGRG	1 cut(s)	619
BsiSI	CCGG	4 cut(s)	125, 1356, 1845, 2460
BslFI	GGGAC	3 cut(s)	413, 967, 1063
BslI	CCNNNNNNNGG	5 cut(s)	65, 842, 987, 1283, 1429
BsmAI	GTCTC	6 cut(s)	74, 693, 1001, 2019, 2510, 2569
BsmBI	CGTCTC	2 cut(s)	2019, 2510
BsmFI	GGGAC	3 cut(s)	413, 967, 1063
BsmI	GAATGC	2 cut(s)	982, 1770
BsnI	GGCC	4 cut(s)	773, 918, 2039, 2240
Bso31I	GGTCTC	2 cut(s)	74, 1001
BsoBI	CYCGRG	1 cut(s)	619
Bsp1286I	GDGCHC	3 cut(s)	426, 1540, 1923
Bsp13I	TCCGGA	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	1102
Bsp1720I	GCTNAGC	1 cut(s)	1391
BspACI	CCGC	8 cut(s)	24, 690, 1140, 1693, 1879, 1932, 2111, 2505
BspANI	GGCC	4 cut(s)	773, 918, 2039, 2240
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	3 cut(s)	357, 1407, 1830
BspLI	GGNNCC	6 cut(s)	57, 267, 763, 1591, 1640, 2241
BspMAI	CTGCAG	1 cut(s)	307
BspPI	GGATC	4 cut(s)	15, 1746, 1766, 2686
BspT107I	GGYRCC	1 cut(s)	761
BspTI	CTTAAG	1 cut(s)	1666
BspTNI	GGTCTC	2 cut(s)	74, 1001
BsrDI	GCAATG	6 cut(s)	397, 992, 1239, 1258, 1585, 1976
BsrFI	RCCGGY	1 cut(s)	2459
BsrGI	TGTACA	1 cut(s)	1102
BsrI	ACTGG	7 cut(s)	1051, 1186, 2241, 2371, 2795, 2841, 2863
BssAI	RCCGGY	1 cut(s)	2459
BssECI	CCNNGG	8 cut(s)	30, 430, 431, 774, 1012, 1845, 2001, 2648
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	1470
BssT1I	CCWWGG	2 cut(s)	774, 1012
Bst2BI	CACGAG	1 cut(s)	1470
Bst2UI	CCWGG	3 cut(s)	432, 2002, 2650
Bst6I	CTCTTC	3 cut(s)	123, 1941, 2179
BstACI	GRCGYC	1 cut(s)	9
BstAFI	CTTAAG	1 cut(s)	1666
BstAPI	GCANNNNNTGC	3 cut(s)	302, 396, 584
BstAUI	TGTACA	1 cut(s)	1102
BstBAI	YACGTR	2 cut(s)	512, 2701
BstC8I	GCNNGC	5 cut(s)	787, 1397, 1822, 2286, 2415
BstF5I	GGATG	9 cut(s)	464, 757, 1701, 1711, 1992, 2031, 2375, 2551, 2719
BstFNI	CGCG	3 cut(s)	357, 1407, 1830
BstH2I	RGCGCY	1 cut(s)	1247
BstHHI	GCGC	4 cut(s)	359, 390, 1246, 1409
BstMAI	GTCTC	6 cut(s)	74, 693, 1001, 2019, 2510, 2569
BstNI	CCWGG	3 cut(s)	432, 2002, 2650
BstNSI	RCATGY	2 cut(s)	98, 2505
BstSCI	CCNGG	5 cut(s)	430, 1354, 1844, 2000, 2648
BstSFI	CTRYAG	2 cut(s)	303, 1023
BstSLI	GKGCMC	1 cut(s)	1923
BstUI	CGCG	3 cut(s)	357, 1407, 1830
BstV1I	GCAGC	7 cut(s)	215, 280, 289, 914, 1004, 2222, 2238
BstV2I	GAAGAC	2 cut(s)	1211, 1343
BstX2I	RGATCY	3 cut(s)	20, 1738, 1909
BstXI	CCANNNNNNTGG	1 cut(s)	2757
BstYI	RGATCY	3 cut(s)	20, 1738, 1909
BsuRI	GGCC	4 cut(s)	773, 918, 2039, 2240
BtsCI	GGATG	9 cut(s)	464, 757, 1701, 1711, 1992, 2031, 2375, 2551, 2719
BtsI	GCAGTG	2 cut(s)	573, 1042
BtsIMutI	CAGTG	8 cut(s)	79, 573, 1042, 1098, 1138, 2234, 2623, 2848
Cac8I	GCNNGC	5 cut(s)	787, 1397, 1822, 2286, 2415
CaiI	CAGNNNCTG	1 cut(s)	2426
CfoI	GCGC	4 cut(s)	359, 390, 1246, 1409
Cfr10I	RCCGGY	1 cut(s)	2459
Cfr13I	GGNCC	3 cut(s)	55, 2239, 2462
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	8 cut(s)	624, 762, 797, 1103, 1179, 1709, 2216, 2702
CspAI	ACCGGT	1 cut(s)	2459
CspCI	CAANNNNNGTGG	4 cut(s)	2089, 2124, 2278, 2313
CviAII	CATG	7 cut(s)	95, 842, 1400, 1809, 1813, 2502, 2569
CviQI	GTAC	8 cut(s)	624, 762, 797, 1103, 1179, 1709, 2216, 2702
DraI	TTTAAA	1 cut(s)	1444
EaeI	YGGCCR	1 cut(s)	771
Eam1104I	CTCTTC	3 cut(s)	123, 1941, 2179
EarI	CTCTTC	3 cut(s)	123, 1941, 2179
EciI	GGCGGA	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	774, 1012
Eco147I	AGGCCT	2 cut(s)	918, 2039
Eco24I	GRGCYC	1 cut(s)	426
Eco31I	GGTCTC	2 cut(s)	74, 1001
Eco32I	GATATC	1 cut(s)	439
Eco47I	GGWCC	2 cut(s)	55, 2462
Eco47III	AGCGCT	1 cut(s)	1245
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	5 cut(s)	933, 1179, 1224, 1335, 2052
Eco88I	CYCGRG	1 cut(s)	619
EcoICRI	GAGCTC	1 cut(s)	424
EcoRII	CCWGG	3 cut(s)	430, 2000, 2648
EcoRV	GATATC	1 cut(s)	439
EcoT14I	CCWWGG	2 cut(s)	774, 1012
EcoT22I	ATGCAT	1 cut(s)	1814
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	2 cut(s)	774, 1012
Esp3I	CGTCTC	2 cut(s)	2019, 2510
FaeI	CATG	7 cut(s)	98, 845, 1403, 1812, 1816, 2505, 2572
FaqI	GGGAC	3 cut(s)	413, 967, 1063
FatI	CATG	7 cut(s)	94, 841, 1399, 1808, 1812, 2501, 2568
FauNDI	CATATG	1 cut(s)	791
FbaI	TGATCA	2 cut(s)	517, 1897
FokI	GGATG	9 cut(s)	471, 764, 1708, 1718, 1999, 2038, 2382, 2538, 2706
FriOI	GRGCYC	1 cut(s)	426
FspBI	CTAG	5 cut(s)	99, 648, 969, 1013, 1557
FspI	TGCGCA	1 cut(s)	389
GlaI	GCGC	4 cut(s)	358, 389, 1245, 1408
GsaI	CCCAGC	1 cut(s)	1920
GsuI	CTGGAG	2 cut(s)	1524, 2671
HaeII	RGCGCY	1 cut(s)	1247
HaeIII	GGCC	4 cut(s)	773, 918, 2039, 2240
HapII	CCGG	4 cut(s)	125, 1356, 1845, 2460
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	4 cut(s)	359, 390, 1246, 1409
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	7 cut(s)	98, 845, 1403, 1812, 1816, 2505, 2572
Hin6I	GCGC	4 cut(s)	357, 388, 1244, 1407
HinP1I	GCGC	4 cut(s)	357, 388, 1244, 1407
HincII	GTYRAC	2 cut(s)	1311, 2263
HindII	GTYRAC	2 cut(s)	1311, 2263
HpaII	CCGG	4 cut(s)	125, 1356, 1845, 2460
HphI	GGTGA	5 cut(s)	548, 1834, 1990, 2198, 2404
Hpy166II	GTNNAC	5 cut(s)	55, 797, 1311, 2263, 2769
Hpy8I	GTNNAC	5 cut(s)	55, 797, 1311, 2263, 2769
HpyAV	CCTTC	8 cut(s)	279, 908, 929, 1154, 1729, 2121, 2323, 2705
HpyCH4IV	ACGT	3 cut(s)	117, 511, 2700
HpySE526I	ACGT	3 cut(s)	117, 511, 2700
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	7 cut(s)	98, 845, 1403, 1812, 1816, 2505, 2572
HspAI	GCGC	4 cut(s)	357, 388, 1244, 1407
Kpn2I	TCCGGA	1 cut(s)	124
KpnI	GGTACC	1 cut(s)	765
Ksp22I	TGATCA	2 cut(s)	517, 1897
LmnI	GCTCC	6 cut(s)	265, 349, 1287, 1543, 2399, 2652
Lsp1109I	GCAGC	7 cut(s)	215, 280, 289, 914, 1004, 2222, 2238
LweI	GCATC	8 cut(s)	449, 483, 1418, 1550, 1661, 1686, 2016, 2728
MaeI	CTAG	5 cut(s)	99, 648, 969, 1013, 1557
MaeII	ACGT	3 cut(s)	117, 511, 2700
MboII	GAAGA	9 cut(s)	140, 731, 1211, 1214, 1343, 1354, 1368, 1958, 2166
MfeI	CAATTG	2 cut(s)	1208, 2295
MflI	RGATCY	3 cut(s)	20, 1738, 1909
MhlI	GDGCHC	3 cut(s)	426, 1540, 1923
MlsI	TGGCCA	1 cut(s)	773
MluI	ACGCGT	1 cut(s)	1828
MluNI	TGGCCA	1 cut(s)	773
MlyI	GAGTC	4 cut(s)	695, 1045, 1316, 1708
MmeI	TCCRAC	4 cut(s)	18, 649, 1608, 1741
Mox20I	TGGCCA	1 cut(s)	773
Mph1103I	ATGCAT	1 cut(s)	1814
MroI	TCCGGA	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	918
MscI	TGGCCA	1 cut(s)	773
MslI	CAYNNNNRTG	6 cut(s)	32, 828, 1232, 1728, 2052, 2687
Msp20I	TGGCCA	1 cut(s)	773
MspA1I	CMGCKG	4 cut(s)	1140, 1865, 2213, 2251
MspCI	CTTAAG	1 cut(s)	1666
MspI	CCGG	4 cut(s)	125, 1356, 1845, 2460
MspR9I	CCNGG	5 cut(s)	432, 1356, 1846, 2002, 2650
MunI	CAATTG	2 cut(s)	1208, 2295
Mva1269I	GAATGC	2 cut(s)	982, 1770
MvaI	CCWGG	3 cut(s)	432, 2002, 2650
MvnI	CGCG	3 cut(s)	357, 1407, 1830
NciI	CCSGG	2 cut(s)	1356, 1846
NdeI	CATATG	1 cut(s)	791
NlaIII	CATG	7 cut(s)	98, 845, 1403, 1812, 1816, 2505, 2572
NlaIV	GGNNCC	6 cut(s)	57, 267, 763, 1591, 1640, 2241
NmuCI	GTSAC	5 cut(s)	727, 821, 830, 1037, 1840
NsbI	TGCGCA	1 cut(s)	389
NsiI	ATGCAT	1 cut(s)	1814
NspI	RCATGY	2 cut(s)	98, 2505
OliI	CACNNNNGTG	2 cut(s)	32, 828
PasI	CCCWGGG	1 cut(s)	431
PceI	AGGCCT	2 cut(s)	918, 2039
PcsI	WCGNNNNNNNCGW	1 cut(s)	2525
PctI	GAATGC	2 cut(s)	982, 1770
PdmI	GAANNNNTTC	1 cut(s)	918
PfeI	GAWTC	8 cut(s)	566, 849, 1256, 1364, 1435, 1631, 1868, 2315
PinAI	ACCGGT	1 cut(s)	2459
PleI	GAGTC	4 cut(s)	695, 1045, 1315, 1708
PpsI	GAGTC	4 cut(s)	695, 1045, 1315, 1708
Ppu21I	YACGTR	2 cut(s)	512, 2701
PshBI	ATTAAT	1 cut(s)	234
PsiI	TTATAA	1 cut(s)	2801
Psp124BI	GAGCTC	1 cut(s)	426
Psp6I	CCWGG	3 cut(s)	430, 2000, 2648
PspFI	CCCAGC	1 cut(s)	1916
PspGI	CCWGG	3 cut(s)	430, 2000, 2648
PspN4I	GGNNCC	6 cut(s)	57, 267, 763, 1591, 1640, 2241
PspPI	GGNCC	3 cut(s)	55, 2239, 2462
PstI	CTGCAG	1 cut(s)	307
PstNI	CAGNNNCTG	1 cut(s)	2426
PsuI	RGATCY	3 cut(s)	20, 1738, 1909
PvuII	CAGCTG	3 cut(s)	1865, 2213, 2251
RsaI	GTAC	8 cut(s)	625, 763, 798, 1104, 1180, 1710, 2217, 2703
RsaNI	GTAC	8 cut(s)	624, 762, 797, 1103, 1179, 1709, 2216, 2702
RseI	CAYNNNNRTG	6 cut(s)	32, 828, 1232, 1728, 2052, 2687
SacI	GAGCTC	1 cut(s)	426
Sau96I	GGNCC	3 cut(s)	55, 2239, 2462
ScaI	AGTACT	1 cut(s)	1180
SchI	GAGTC	4 cut(s)	695, 1045, 1316, 1708
ScrFI	CCNGG	5 cut(s)	432, 1356, 1846, 2002, 2650
SduI	GDGCHC	3 cut(s)	426, 1540, 1923
SfaNI	GCATC	8 cut(s)	449, 483, 1418, 1550, 1661, 1686, 2016, 2728
SfcI	CTRYAG	2 cut(s)	303, 1023
SinI	GGWCC	2 cut(s)	55, 2462
SmiMI	CAYNNNNRTG	6 cut(s)	32, 828, 1232, 1728, 2052, 2687
SmlI	CTYRAG	3 cut(s)	344, 1666, 2830
SmoI	CTYRAG	3 cut(s)	344, 1666, 2830
SseBI	AGGCCT	2 cut(s)	918, 2039
SsiI	CCGC	8 cut(s)	24, 690, 1140, 1693, 1879, 1932, 2111, 2505
SspI	AATATT	4 cut(s)	610, 1570, 2182, 2709
SspMI	CTAG	5 cut(s)	99, 648, 969, 1013, 1557
SstI	GAGCTC	1 cut(s)	426
StuI	AGGCCT	2 cut(s)	918, 2039
StyD4I	CCNGG	5 cut(s)	430, 1354, 1844, 2000, 2648
StyI	CCWWGG	2 cut(s)	774, 1012
TaiI	ACGT	3 cut(s)	120, 514, 2703
TaqI	TCGA	2 cut(s)	2007, 2881
TatI	WGTACW	4 cut(s)	796, 1102, 1178, 2215
TauI	GCSGC	3 cut(s)	693, 1881, 2114
TfiI	GAWTC	8 cut(s)	566, 849, 1256, 1364, 1435, 1631, 1868, 2315
TscAI	CASTG	8 cut(s)	79, 580, 1042, 1105, 1138, 2241, 2623, 2848
TseFI	GTSAC	5 cut(s)	727, 821, 830, 1037, 1840
TseI	GCWGC	7 cut(s)	203, 293, 302, 902, 1017, 2210, 2251
Tsp45I	GTSAC	5 cut(s)	727, 821, 830, 1037, 1840
TspGWI	ACGGA	4 cut(s)	731, 1316, 1999, 2517
TspRI	CASTG	8 cut(s)	79, 580, 1042, 1105, 1138, 2241, 2623, 2848
Vha464I	CTTAAG	1 cut(s)	1666
VpaK11BI	GGWCC	2 cut(s)	55, 2462
VspI	ATTAAT	1 cut(s)	234
XapI	RAATTY	7 cut(s)	465, 755, 1196, 1384, 2491, 2836, 2857
XbaI	TCTAGA	1 cut(s)	1556
XceI	RCATGY	2 cut(s)	98, 2505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmaJI	CCTAGG	1 cut(s)	1012
XmnI	GAANNNNTTC	1 cut(s)	918
XspI	CTAG	5 cut(s)	99, 648, 969, 1013, 1557
ZrmI	AGTACT	1 cut(s)	1180
Zsp2I	ATGCAT	1 cut(s)	1814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.