Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008061

Physical Location & Seq

Genomic Coordinates Forward (+)

69876223 .. 69891735

Gene Structure 15513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG498200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2898 bp

ATGGAGGACGCCTACGCCAGATCCGCCACCGAGGTGTTGGATTTCTTTGGCGTGGACCCGAAACGAGGTCTCAGTGAAACTCAGGTTTCGCAACATGCTAGACTTTATGGACAAAACGTGCTTCCGGAAGAGAAAAGGGCTTCGTTCTGGAAACTTGTCCTGAAACAGTTTGATGATTTGCTTGTTAAGATATTGATTGTTGCAGCAATCGTTTCTTTTGTTCTGGCTCTAATTAATGGAGATACGGGCTTAACAGCATTTTTGGAGCCTTCTGTTATCCTCACGATATTGGCTGCAAATGCTGCAGTAGGAGTGATTACAGAAACTAATGCAGAAAAGGCTCTTGAGGAGCTACGCGCATACCAAGCTGATAACGCAACCGTTCTGCGCAATGGTTGCTTCTCCATACTTCCAGCAACAGAGCTCGTCCCTGGGGATATCGTTGAAGTGGCTGTGGGATGCAAAATTCCAGCCGATATGAGAATGATTGAGATGCTCAGTAATCAATTACGTGTTGATCAGGCAATCCTTACAGGTGAGAGTTGCTCTGTGGAGAAAGACCTTGAATCTACCACTGCAACAAATGCTGTATATCAAGACAAGACAAATATTCTTTTCTCGGGTACGGTAGTCGTGGCTGGTAGGGCTAGAGCTGTTGTAGTAAGAGTTGGAACTCAGACTGCTATGGGCGGCATACGAGACTCAATGTTGCAAACGGAAGATGAAGTGACACCATTGAAAAAGAAGCTGGATGAATTTGGTACCTTTTTGGCCAAGGTTATTGCTGGCATATGTGTACTCGTATGGATTGTAAATATAGGTCACTTTCGTGACCCTGCTCATGGTGGATTCTTGCGTGGTGCAATTCATTACTTTAAGATTGCAGTTGCACTTGCAGTTGCAGCAATCCCTGAAGGCCTTCCTGCTGTTGTTACAACTTGTTTGGCTCTTGGGACAAAACGAATGGCTAGGTTGAATGCCATTGTAAGGTCATTGCCATCAGTTGAGACCCTAGGCTGCACTACAGTAATTTGCAGTGACAAAACTGGGACTCTGACTACCAATATGATGTCTGCCTCTAAGCTTGAATTTCCAGCTCAATTGCCTTGTCTTCTTCACATAGCAATGGCTTCAGCGCTTTGCAATGAATCTGTCTTGCAATATAATCCAGACAAGGGGAGCTATGAAAAAATTGGCGAGTCAACTGAAGTAGCCCTCCGTGTCCTTGCAGAGAAGATTGGTCTTCCCGGCTATGATTCTATGCCATCTTCTCTGAATTTGCTAAGCAAGCATGAACGCGCATCTTACTGTAACCATTATTGGGAGAATCAATTTAAAAAGATTTCTGTTGCAGATTTTACTCGTGATCGTAAAATGATGAGTGTCCTTTGTAGCCGAAGTCAGTTGCAGATTATGTTCTGCAAAGGTGCTCCAGAGAGCATTATTTCTAGATGCACCAATATTCTGTGCAATGATGATGGTTCCACTATACCATTAACTGCTAATATCCGAGCTGAGTTGGAATCAAGGTTCCACAGTTTTGCAGGAAAAGAAACGTTAAGATGCTTGGCTCTTGCTTTCAAGCGGATGCCGATGGATGTACCGACTCTCTCCCACAATGATGAGAAGGATCTTACATTCATTGGGTTGGTTGGAATGCTTGATCCACCAAGAGAGGAAGTGAAAAATGCTATGCTTTCATGCATGACTGCTGGCATACGCGTTATAGTTGTCACCGGGGATAACAAATCCACAGCTGAATCCCTTTGCCGCAAGATAGGTGCTTTTGATCACTTTGTAGATCTTGCTGGGCACTCTTACACCGCAACTGAGTTTGAAGAGTTACCAGCTTTGCAGAAAACGATAGCATTGCAACGGATGGCATTATTCACCAGGGTCGAGCCGTCTCATAAAAGGATGCTGGTTGAGGCCTTACAACACCAGAATGAAGTGGTTGCAATGACTGGTGATGGTGTTAATGATGCACCTGCACTAAAGAAGGCAGACATTGGAATTGCCATGGGTTCAGGAACAGCTGTTGCCAAGAGTGCTTCAGATATGGTTTTGGCTGATGACAATTTTGCCACTATTGTTGCGGCTGTTGCAGAGGGAAGGGCAATTTACAATAACACAAAACAATTCATCAGATATATGATCTCTTCAAATATTGGTGAAGTTGTTTGTATATTTGTGGCAGCTGTACTTGGAATACCTGATACACTGGCCCCTGTCCAGCTGCTCTGGGTCAACTTAGTTACTGATGGGTTGCCTGCCACAGCAATTGGTTTTAATAAGCAAGATTCTGATGTGATGAAGGCTAAACCTCGTAAGGTTAATGAAGCAGTTGTTACTGGATGGTTGTTTTTTCGTTATTTGGTGATTGGAGCTTATGTTGGGCTTGCCACAGTTGCTGGATTTATTTGGTGGTTTCTTTACTCTGATACCGGTCCTAAACTGCCATATATGGAACTGATAAATTCTGACACATGCGGAATGAGGGAGACGACTTATCCGTGCAGTATATTTAGTGATCGCCATCCATCAACTGTCTCCATGACTGTTCTTGTGGTTGTTGAAATGTTCAATGCTTTGAATAATCTCAGTGAAAACCAATCACTTCTTGTTATCCCTCCCTGGAGCAACTTATGGCTTGTTGGTTCAATCATCATAACGATGATCCTTCACGTACTAATATTATATGTGCATCCCCTCTCAGTTCTTTTCTCTGTAACACCATTATCTTGGGCTGAGTGGACTGTTGTGCTATACCTTTCGTTTCCAGTTATAATCATTGATGAAGTGCTAAAGTTCTTCTCAAGAAATTCCAGTGGTGTAAGGTTAAATTTCCAGTTAAGGAGGCGTGATCGACTGCCAAGAAAGGAATTGCGTGATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0003824 GO:0005215 GO:0005384 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0007275 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015410 GO:0015662 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022622 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071421 GO:0072511 GO:0090662 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098791 GO:0099131 GO:0099132 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04972 ko05010 map04020 map04022 map04972 map05010

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

965

Amino Acids

105.8

Weight (kDa)

6.21

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	5 - 72	1.7e-19	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	122 - 235	1.8e-24	P-type ATPase actuator domain
Cation_ATPase	PF13246	373 - 560	1.6e-41	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	542 - 669	2e-14	haloacid dehalogenase-like hydrolase
Hydrolase_3	PF08282	641 - 696	2.9e-06	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	740 - 938	2.6e-45	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10130
fragaria_vesca	FvH4_2g32870 FvH4_2g32870 FvH4_2g32870
malus_domestica	MD08G1080200.v1.1 MD15G1067300.v1.1
prunus_persica	Prupe.1G421100_v2.0.a1 Prupe.1G421100_v2.0.a1 Prupe.1G421100_v2.0.a1 Prupe.1G421100_v2.0.a1 Prupe.1G421100_v2.0.a1
pyrus_communis	pycom08g06620 pycom15g06380
rosa_chinensis	RchiOBHm_Chr6g0309841
rosa_laevigata	RLG00000010530
rosa_multiflora	Rmu_ssc0000373.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159130
rosa_rugosa	Rorug06G0375200 Rorug06G0375300
rosa_samantha	Rh6AG488700 Rh6BG498200 Rh6CG503000 Rh6DG489200
rosa_wichuraiana	Rw6G042560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2786
AarI	CACCTGC	1 cut(s)	1996
Acc16I	TGCGCA	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	1996
Acc65I	GGTACC	1 cut(s)	761
AccB1I	GGYRCC	1 cut(s)	761
AccII	CGCG	3 cut(s)	357, 1299, 1722
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	7 cut(s)	24, 690, 1585, 1771, 1824, 2096, 2490
AclI	AACGTT	1 cut(s)	1556
AclWI	GGATC	4 cut(s)	15, 1638, 1658, 2671
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	7 cut(s)	465, 755, 1088, 1276, 2476, 2821, 2842
AcuI	CTGAAG	4 cut(s)	933, 1116, 1227, 2037
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	6 cut(s)	625, 763, 798, 1602, 2202, 2688
AfeI	AGCGCT	1 cut(s)	1137
AfiI	CCNNNNNNNGG	5 cut(s)	65, 842, 987, 1175, 1321
AflIII	ACRYGT	2 cut(s)	511, 1720
AgeI	ACCGGT	1 cut(s)	2444
AjnI	CCWGG	3 cut(s)	430, 1892, 2633
AleI	CACNNNNGTG	2 cut(s)	32, 828
AloI	GAACNNNNNNTCC	2 cut(s)	1514, 1546
Alw21I	GWGCWC	2 cut(s)	426, 1432
Alw26I	GTCTC	6 cut(s)	74, 693, 1001, 1911, 2495, 2554
AlwI	GGATC	4 cut(s)	15, 1638, 1658, 2671
AlwNI	CAGNNNCTG	1 cut(s)	2411
Ama87I	CYCGRG	1 cut(s)	619
Aor13HI	TCCGGA	1 cut(s)	124
Aor51HI	AGCGCT	1 cut(s)	1137
AoxI	GGCC	4 cut(s)	771, 916, 1929, 2223
ApeKI	GCWGC	7 cut(s)	203, 293, 302, 902, 1017, 2195, 2236
ApoI	RAATTY	7 cut(s)	465, 755, 1088, 1276, 2476, 2821, 2842
AseI	ATTAAT	1 cut(s)	234
AsiGI	ACCGGT	1 cut(s)	2444
Asp700I	GAANNNNTTC	1 cut(s)	918
Asp718I	GGTACC	1 cut(s)	761
AspA2I	CCTAGG	1 cut(s)	1012
AspLEI	GCGC	4 cut(s)	359, 390, 1138, 1301
AspS9I	GGNCC	3 cut(s)	55, 2224, 2447
AsuC2I	CCSGG	2 cut(s)	1248, 1738
AsuHPI	GGTGA	6 cut(s)	548, 1726, 1882, 1979, 2183, 2389
AvaI	CYCGRG	1 cut(s)	619
AvaII	GGWCC	2 cut(s)	55, 2447
AvrII	CCTAGG	1 cut(s)	1012
BaeGI	GKGCMC	1 cut(s)	1815
BaeI	ACNNNNGTAYC	2 cut(s)	615, 648
BalI	TGGCCA	1 cut(s)	773
BanI	GGYRCC	1 cut(s)	761
BanII	GRGCYC	1 cut(s)	426
BauI	CACGAG	1 cut(s)	1362
BbsI	GAAGAC	2 cut(s)	1103, 1235
Bbv12I	GWGCWC	2 cut(s)	426, 1432
BbvI	GCAGC	7 cut(s)	215, 280, 289, 914, 1004, 2207, 2223
BceAI	ACGGC	1 cut(s)	1888
BcgI	CGANNNNNNTGC	2 cut(s)	1852, 1886
BciT130I	CCWGG	3 cut(s)	432, 1894, 2635
BclI	TGATCA	2 cut(s)	517, 1789
BcnI	CCSGG	2 cut(s)	1248, 1738
BcoDI	GTCTC	6 cut(s)	74, 693, 1001, 1911, 2495, 2554
BfaI	CTAG	5 cut(s)	99, 648, 969, 1013, 1449
BfmI	CTRYAG	2 cut(s)	303, 1023
BfoI	RGCGCY	1 cut(s)	1139
BfuAI	ACCTGC	1 cut(s)	1996
BglII	AGATCT	1 cut(s)	1801
BlnI	CCTAGG	1 cut(s)	1012
BlpI	GCTNAGC	1 cut(s)	1283
Bme1390I	CCNGG	5 cut(s)	432, 1248, 1738, 1894, 2635
Bme18I	GGWCC	2 cut(s)	55, 2447
BmeT110I	CYCGRG	1 cut(s)	619
BmgT120I	GGNCC	3 cut(s)	55, 2224, 2447
BmiI	GGNNCC	6 cut(s)	57, 267, 763, 1483, 1532, 2226
BmrFI	CCNGG	5 cut(s)	432, 1248, 1738, 1894, 2635
BmrI	ACTGGG	1 cut(s)	1056
BmsI	GCATC	9 cut(s)	449, 483, 1310, 1442, 1553, 1578, 1908, 1972, 2713
BmuI	ACTGGG	1 cut(s)	1056
BpiI	GAAGAC	2 cut(s)	1103, 1235
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
BpmI	CTGGAG	2 cut(s)	1416, 2656
Bpu1102I	GCTNAGC	1 cut(s)	1283
BpuEI	CTTGAG	2 cut(s)	365, 2800
BpuMI	CCSGG	2 cut(s)	1248, 1738
BsaAI	YACGTR	2 cut(s)	512, 2686
BsaBI	GATNNNNATC	1 cut(s)	2535
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	2 cut(s)	74, 1001
BsaJI	CCNNGG	9 cut(s)	30, 430, 431, 774, 1012, 1737, 1893, 2019, 2633
BsaWI	WCCGGW	2 cut(s)	124, 2444
BsaXI	ACNNNNNCTCC	2 cut(s)	2376, 2406
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 842, 987, 1175, 1321
Bse118I	RCCGGY	1 cut(s)	2444
Bse1I	ACTGG	7 cut(s)	1051, 1969, 2226, 2356, 2780, 2826, 2848
Bse3DI	GCAATG	7 cut(s)	397, 992, 1131, 1150, 1477, 1868, 1965
Bse8I	GATNNNNATC	1 cut(s)	2535
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	3 cut(s)	432, 1894, 2635
BseDI	CCNNGG	9 cut(s)	30, 430, 431, 774, 1012, 1737, 1893, 2019, 2633
BseGI	GGATG	9 cut(s)	464, 757, 1593, 1603, 1884, 1923, 2360, 2536, 2704
BseJI	GATNNNNATC	1 cut(s)	2535
BseLI	CCNNNNNNNGG	5 cut(s)	65, 842, 987, 1175, 1321
BseMI	GCAATG	7 cut(s)	397, 992, 1131, 1150, 1477, 1868, 1965
BseMII	CTCAG	9 cut(s)	85, 95, 511, 689, 1506, 1821, 2614, 2727, 2739
BseNI	ACTGG	7 cut(s)	1051, 1969, 2226, 2356, 2780, 2826, 2848
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	1815
BseXI	GCAGC	7 cut(s)	215, 280, 289, 914, 1004, 2207, 2223
BseYI	CCCAGC	1 cut(s)	1808
BsgI	GTGCAG	3 cut(s)	1003, 1974, 2536
Bsh1236I	CGCG	3 cut(s)	357, 1299, 1722
BshFI	GGCC	4 cut(s)	773, 918, 1931, 2225
BshNI	GGYRCC	1 cut(s)	761
BshTI	ACCGGT	1 cut(s)	2444
BsiHKAI	GWGCWC	2 cut(s)	426, 1432
BsiHKCI	CYCGRG	1 cut(s)	619
BsiSI	CCGG	4 cut(s)	125, 1248, 1737, 2445
BslFI	GGGAC	3 cut(s)	413, 967, 1063
BslI	CCNNNNNNNGG	5 cut(s)	65, 842, 987, 1175, 1321
BsmAI	GTCTC	6 cut(s)	74, 693, 1001, 1911, 2495, 2554
BsmBI	CGTCTC	2 cut(s)	1911, 2495
BsmFI	GGGAC	3 cut(s)	413, 967, 1063
BsmI	GAATGC	2 cut(s)	982, 1662
BsnI	GGCC	4 cut(s)	773, 918, 1931, 2225
Bso31I	GGTCTC	2 cut(s)	74, 1001
BsoBI	CYCGRG	1 cut(s)	619
Bsp1286I	GDGCHC	3 cut(s)	426, 1432, 1815
Bsp13I	TCCGGA	1 cut(s)	124
Bsp1720I	GCTNAGC	1 cut(s)	1283
Bsp19I	CCATGG	1 cut(s)	2019
BspACI	CCGC	7 cut(s)	24, 690, 1585, 1771, 1824, 2096, 2490
BspANI	GGCC	4 cut(s)	773, 918, 1931, 2225
BspCNI	CTCAG	9 cut(s)	84, 94, 510, 688, 1507, 1822, 2613, 2726, 2740
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	3 cut(s)	357, 1299, 1722
BspLI	GGNNCC	6 cut(s)	57, 267, 763, 1483, 1532, 2226
BspMAI	CTGCAG	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	1996
BspPI	GGATC	4 cut(s)	15, 1638, 1658, 2671
BspT107I	GGYRCC	1 cut(s)	761
BspTNI	GGTCTC	2 cut(s)	74, 1001
BsrDI	GCAATG	7 cut(s)	397, 992, 1131, 1150, 1477, 1868, 1965
BsrFI	RCCGGY	1 cut(s)	2444
BsrI	ACTGG	7 cut(s)	1051, 1969, 2226, 2356, 2780, 2826, 2848
BssAI	RCCGGY	1 cut(s)	2444
BssECI	CCNNGG	9 cut(s)	30, 430, 431, 774, 1012, 1737, 1893, 2019, 2633
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	1362
BssT1I	CCWWGG	3 cut(s)	774, 1012, 2019
Bst2BI	CACGAG	1 cut(s)	1362
Bst2UI	CCWGG	3 cut(s)	432, 1894, 2635
Bst6I	CTCTTC	3 cut(s)	123, 1833, 2164
BstACI	GRCGYC	1 cut(s)	9
BstAPI	GCANNNNNTGC	3 cut(s)	302, 396, 584
BstBAI	YACGTR	2 cut(s)	512, 2686
BstC8I	GCNNGC	5 cut(s)	787, 1289, 1714, 2271, 2400
BstDSI	CCRYGG	1 cut(s)	2019
BstF5I	GGATG	9 cut(s)	464, 757, 1593, 1603, 1884, 1923, 2360, 2536, 2704
BstFNI	CGCG	3 cut(s)	357, 1299, 1722
BstH2I	RGCGCY	1 cut(s)	1139
BstHHI	GCGC	4 cut(s)	359, 390, 1138, 1301
BstMAI	GTCTC	6 cut(s)	74, 693, 1001, 1911, 2495, 2554
BstNI	CCWGG	3 cut(s)	432, 1894, 2635
BstNSI	RCATGY	2 cut(s)	98, 2490
BstSCI	CCNGG	5 cut(s)	430, 1246, 1736, 1892, 2633
BstSFI	CTRYAG	2 cut(s)	303, 1023
BstSLI	GKGCMC	1 cut(s)	1815
BstUI	CGCG	3 cut(s)	357, 1299, 1722
BstV1I	GCAGC	7 cut(s)	215, 280, 289, 914, 1004, 2207, 2223
BstV2I	GAAGAC	2 cut(s)	1103, 1235
BstX2I	RGATCY	3 cut(s)	20, 1630, 1801
BstXI	CCANNNNNNTGG	1 cut(s)	2742
BstYI	RGATCY	3 cut(s)	20, 1630, 1801
BsuRI	GGCC	4 cut(s)	773, 918, 1931, 2225
BtgI	CCRYGG	1 cut(s)	2019
BtsCI	GGATG	9 cut(s)	464, 757, 1593, 1603, 1884, 1923, 2360, 2536, 2704
BtsI	GCAGTG	2 cut(s)	573, 1042
BtsIMutI	CAGTG	6 cut(s)	79, 573, 1042, 2219, 2608, 2833
BveI	ACCTGC	1 cut(s)	1996
Cac8I	GCNNGC	5 cut(s)	787, 1289, 1714, 2271, 2400
CaiI	CAGNNNCTG	1 cut(s)	2411
CfoI	GCGC	4 cut(s)	359, 390, 1138, 1301
Cfr10I	RCCGGY	1 cut(s)	2444
Cfr13I	GGNCC	3 cut(s)	55, 2224, 2447
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	6 cut(s)	624, 762, 797, 1601, 2201, 2687
CspAI	ACCGGT	1 cut(s)	2444
CspCI	CAANNNNNGTGG	4 cut(s)	2074, 2109, 2263, 2298
CviAII	CATG	8 cut(s)	95, 842, 1292, 1701, 1705, 2020, 2487, 2554
CviQI	GTAC	6 cut(s)	624, 762, 797, 1601, 2201, 2687
DraI	TTTAAA	1 cut(s)	1336
EaeI	YGGCCR	1 cut(s)	771
Eam1104I	CTCTTC	3 cut(s)	123, 1833, 2164
EarI	CTCTTC	3 cut(s)	123, 1833, 2164
EciI	GGCGGA	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	3 cut(s)	774, 1012, 2019
Eco147I	AGGCCT	2 cut(s)	918, 1931
Eco24I	GRGCYC	1 cut(s)	426
Eco31I	GGTCTC	2 cut(s)	74, 1001
Eco32I	GATATC	1 cut(s)	439
Eco47I	GGWCC	2 cut(s)	55, 2447
Eco47III	AGCGCT	1 cut(s)	1137
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	4 cut(s)	933, 1116, 1227, 2037
Eco88I	CYCGRG	1 cut(s)	619
EcoICRI	GAGCTC	1 cut(s)	424
EcoRII	CCWGG	3 cut(s)	430, 1892, 2633
EcoRV	GATATC	1 cut(s)	439
EcoT14I	CCWWGG	3 cut(s)	774, 1012, 2019
EcoT22I	ATGCAT	1 cut(s)	1706
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	3 cut(s)	774, 1012, 2019
Esp3I	CGTCTC	2 cut(s)	1911, 2495
FaeI	CATG	8 cut(s)	98, 845, 1295, 1704, 1708, 2023, 2490, 2557
FaqI	GGGAC	3 cut(s)	413, 967, 1063
FatI	CATG	8 cut(s)	94, 841, 1291, 1700, 1704, 2019, 2486, 2553
FauNDI	CATATG	1 cut(s)	791
FbaI	TGATCA	2 cut(s)	517, 1789
FokI	GGATG	9 cut(s)	471, 764, 1600, 1610, 1891, 1930, 2367, 2523, 2691
FriOI	GRGCYC	1 cut(s)	426
FspBI	CTAG	5 cut(s)	99, 648, 969, 1013, 1449
FspI	TGCGCA	1 cut(s)	389
GlaI	GCGC	4 cut(s)	358, 389, 1137, 1300
GsaI	CCCAGC	1 cut(s)	1812
GsuI	CTGGAG	2 cut(s)	1416, 2656
HaeII	RGCGCY	1 cut(s)	1139
HaeIII	GGCC	4 cut(s)	773, 918, 1931, 2225
HapII	CCGG	4 cut(s)	125, 1248, 1737, 2445
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	4 cut(s)	359, 390, 1138, 1301
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	8 cut(s)	98, 845, 1295, 1704, 1708, 2023, 2490, 2557
Hin6I	GCGC	4 cut(s)	357, 388, 1136, 1299
HinP1I	GCGC	4 cut(s)	357, 388, 1136, 1299
HincII	GTYRAC	2 cut(s)	1203, 2248
HindII	GTYRAC	2 cut(s)	1203, 2248
HindIII	AAGCTT	1 cut(s)	1082
HpaII	CCGG	4 cut(s)	125, 1248, 1737, 2445
HphI	GGTGA	6 cut(s)	548, 1726, 1882, 1979, 2183, 2389
Hpy166II	GTNNAC	5 cut(s)	55, 797, 1203, 2248, 2754
Hpy188I	TCNGA	9 cut(s)	678, 1056, 1275, 1511, 2056, 2147, 2305, 2440, 2482
Hpy8I	GTNNAC	5 cut(s)	55, 797, 1203, 2248, 2754
HpyAV	CCTTC	8 cut(s)	279, 908, 929, 1621, 1993, 2106, 2308, 2690
HpyCH4IV	ACGT	4 cut(s)	117, 511, 1556, 2685
HpySE526I	ACGT	4 cut(s)	117, 511, 1556, 2685
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	8 cut(s)	98, 845, 1295, 1704, 1708, 2023, 2490, 2557
HspAI	GCGC	4 cut(s)	357, 388, 1136, 1299
Kpn2I	TCCGGA	1 cut(s)	124
KpnI	GGTACC	1 cut(s)	765
Ksp22I	TGATCA	2 cut(s)	517, 1789
LmnI	GCTCC	6 cut(s)	265, 349, 1179, 1435, 2384, 2637
Lsp1109I	GCAGC	7 cut(s)	215, 280, 289, 914, 1004, 2207, 2223
LweI	GCATC	9 cut(s)	449, 483, 1310, 1442, 1553, 1578, 1908, 1972, 2713
MaeI	CTAG	5 cut(s)	99, 648, 969, 1013, 1449
MaeII	ACGT	4 cut(s)	117, 511, 1556, 2685
MfeI	CAATTG	2 cut(s)	1100, 2280
MflI	RGATCY	3 cut(s)	20, 1630, 1801
MhlI	GDGCHC	3 cut(s)	426, 1432, 1815
MlsI	TGGCCA	1 cut(s)	773
MluI	ACGCGT	1 cut(s)	1720
MluNI	TGGCCA	1 cut(s)	773
MlyI	GAGTC	4 cut(s)	695, 1045, 1208, 1600
MmeI	TCCRAC	4 cut(s)	18, 649, 1500, 1633
Mox20I	TGGCCA	1 cut(s)	773
Mph1103I	ATGCAT	1 cut(s)	1706
MroI	TCCGGA	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	918
MscI	TGGCCA	1 cut(s)	773
MslI	CAYNNNNRTG	6 cut(s)	32, 828, 1124, 1620, 1944, 2672
Msp20I	TGGCCA	1 cut(s)	773
MspA1I	CMGCKG	4 cut(s)	1757, 2036, 2198, 2236
MspI	CCGG	4 cut(s)	125, 1248, 1737, 2445
MspR9I	CCNGG	5 cut(s)	432, 1248, 1738, 1894, 2635
MunI	CAATTG	2 cut(s)	1100, 2280
Mva1269I	GAATGC	2 cut(s)	982, 1662
MvaI	CCWGG	3 cut(s)	432, 1894, 2635
MvnI	CGCG	3 cut(s)	357, 1299, 1722
NciI	CCSGG	2 cut(s)	1248, 1738
NcoI	CCATGG	1 cut(s)	2019
NdeI	CATATG	1 cut(s)	791
NlaIII	CATG	8 cut(s)	98, 845, 1295, 1704, 1708, 2023, 2490, 2557
NlaIV	GGNNCC	6 cut(s)	57, 267, 763, 1483, 1532, 2226
NmuCI	GTSAC	5 cut(s)	727, 821, 830, 1037, 1732
NsbI	TGCGCA	1 cut(s)	389
NsiI	ATGCAT	1 cut(s)	1706
NspI	RCATGY	2 cut(s)	98, 2490
OliI	CACNNNNGTG	2 cut(s)	32, 828
PaqCI	CACCTGC	1 cut(s)	1996
PasI	CCCWGGG	1 cut(s)	431
PceI	AGGCCT	2 cut(s)	918, 1931
PcsI	WCGNNNNNNNCGW	1 cut(s)	2510
PctI	GAATGC	2 cut(s)	982, 1662
PdmI	GAANNNNTTC	1 cut(s)	918
PfeI	GAWTC	8 cut(s)	566, 849, 1148, 1256, 1327, 1523, 1760, 2300
PinAI	ACCGGT	1 cut(s)	2444
PleI	GAGTC	4 cut(s)	695, 1045, 1207, 1600
PpsI	GAGTC	4 cut(s)	695, 1045, 1207, 1600
Ppu21I	YACGTR	2 cut(s)	512, 2686
PshBI	ATTAAT	1 cut(s)	234
PsiI	TTATAA	1 cut(s)	2786
Psp124BI	GAGCTC	1 cut(s)	426
Psp1406I	AACGTT	1 cut(s)	1556
Psp6I	CCWGG	3 cut(s)	430, 1892, 2633
PspFI	CCCAGC	1 cut(s)	1808
PspGI	CCWGG	3 cut(s)	430, 1892, 2633
PspN4I	GGNNCC	6 cut(s)	57, 267, 763, 1483, 1532, 2226
PspPI	GGNCC	3 cut(s)	55, 2224, 2447
PstI	CTGCAG	1 cut(s)	307
PstNI	CAGNNNCTG	1 cut(s)	2411
PsuI	RGATCY	3 cut(s)	20, 1630, 1801
PvuII	CAGCTG	4 cut(s)	1757, 2036, 2198, 2236
RsaI	GTAC	6 cut(s)	625, 763, 798, 1602, 2202, 2688
RsaNI	GTAC	6 cut(s)	624, 762, 797, 1601, 2201, 2687
RseI	CAYNNNNRTG	6 cut(s)	32, 828, 1124, 1620, 1944, 2672
SacI	GAGCTC	1 cut(s)	426
Sau96I	GGNCC	3 cut(s)	55, 2224, 2447
SchI	GAGTC	4 cut(s)	695, 1045, 1208, 1600
ScrFI	CCNGG	5 cut(s)	432, 1248, 1738, 1894, 2635
SduI	GDGCHC	3 cut(s)	426, 1432, 1815
SfaNI	GCATC	9 cut(s)	449, 483, 1310, 1442, 1553, 1578, 1908, 1972, 2713
SfcI	CTRYAG	2 cut(s)	303, 1023
SinI	GGWCC	2 cut(s)	55, 2447
SmiMI	CAYNNNNRTG	6 cut(s)	32, 828, 1124, 1620, 1944, 2672
SmlI	CTYRAG	2 cut(s)	344, 2815
SmoI	CTYRAG	2 cut(s)	344, 2815
SseBI	AGGCCT	2 cut(s)	918, 1931
SsiI	CCGC	7 cut(s)	24, 690, 1585, 1771, 1824, 2096, 2490
SspI	AATATT	4 cut(s)	610, 1462, 2167, 2694
SspMI	CTAG	5 cut(s)	99, 648, 969, 1013, 1449
SstI	GAGCTC	1 cut(s)	426
StuI	AGGCCT	2 cut(s)	918, 1931
StyD4I	CCNGG	5 cut(s)	430, 1246, 1736, 1892, 2633
StyI	CCWWGG	3 cut(s)	774, 1012, 2019
TaiI	ACGT	4 cut(s)	120, 514, 1559, 2688
TaqI	TCGA	2 cut(s)	1899, 2866
TatI	WGTACW	2 cut(s)	796, 2200
TauI	GCSGC	3 cut(s)	693, 1773, 2099
TfiI	GAWTC	8 cut(s)	566, 849, 1148, 1256, 1327, 1523, 1760, 2300
TscAI	CASTG	6 cut(s)	79, 580, 1042, 2226, 2608, 2833
TseFI	GTSAC	5 cut(s)	727, 821, 830, 1037, 1732
TseI	GCWGC	7 cut(s)	203, 293, 302, 902, 1017, 2195, 2236
Tsp45I	GTSAC	5 cut(s)	727, 821, 830, 1037, 1732
TspGWI	ACGGA	4 cut(s)	731, 1208, 1891, 2502
TspRI	CASTG	6 cut(s)	79, 580, 1042, 2226, 2608, 2833
VpaK11BI	GGWCC	2 cut(s)	55, 2447
VspI	ATTAAT	1 cut(s)	234
XapI	RAATTY	7 cut(s)	465, 755, 1088, 1276, 2476, 2821, 2842
XbaI	TCTAGA	1 cut(s)	1448
XceI	RCATGY	2 cut(s)	98, 2490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmaJI	CCTAGG	1 cut(s)	1012
XmnI	GAANNNNTTC	1 cut(s)	918
XspI	CTAG	5 cut(s)	99, 648, 969, 1013, 1449
Zsp2I	ATGCAT	1 cut(s)	1706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.