Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000477.1

Orthogroup ID

OG0002513

Physical Location & Seq

Genomic Coordinates Forward (+)

34245 .. 35822

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000477.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgggtggccagatgcagcagagcaatgccgccgcggcaactgctctgtatgaccaccctgccggcaatgcgggacccaccaacgatgccggcgatgcggtcatggcccggtggctccagtccgccggcctccagcatctggcctcaccgttggcttcgacggccatcgataaccggctccttcctaaccttctcatgcagggttatggagcgcaatctgctgaagagaaacagaggctcttcaaattaatgcgcaaccttaatttcaatggggagtccggttcggagccatacacacctactgcccaaacatcggcaggggctgcatcggagggtttttactctccggagttcaggggggatttcggagctgggctgttggatcttcatgctatggatgacacagagcttctttctgagcatgttatgtccgaaccttttgagccatcaccctttatgcctggtggtatgaaagcatttgaagatgaattgaatttgacgagtggcggacagcaaagtgtgctacctgatcaagatgcatcagttccattagcccagaatgaaaaggagagcacaagggaaaacaatgtggctaaaattaaagttgtggtatgtgggattgctgtagatgtttttcgtctggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0000902 GO:0000904 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005794 GO:0005795 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0007080 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008608 GO:0009505 GO:0009531 GO:0009653 GO:0009832 GO:0009834 GO:0009888 GO:0009987 GO:0010026 GO:0010087 GO:0010089 GO:0010090 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030154 GO:0030312 GO:0030951 GO:0030952 GO:0031109 GO:0031984 GO:0032502 GO:0032984 GO:0032989 GO:0032991 GO:0035371 GO:0042546 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043624 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048468 GO:0048856 GO:0048869 GO:0050000 GO:0050789 GO:0050794 GO:0051010 GO:0051179 GO:0051234 GO:0051261 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051983 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090058 GO:0090558 GO:0090626 GO:0097435 GO:0098687 GO:0098791 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1903047 GO:1903338 GO:1990752

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin RRM_1

Protein Analysis

215

Amino Acids

22.86

Weight (kDa)

4.51

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16630 AT3G16630
fragaria_vesca	FvH4_4g18250 FvH4_4g18250 FvH4_4g18250 FvH4_4g18250 FvH4_4g18250 FvH4_4g18250 FvH4_4g18250 FvH4_4g18250 FvH4_4g18250 FvH4_4g18250 FvH4_4g18250 FvH4_4g18250 FvH4_4g18250 FvH4_4g18250 FvH4_4g18250 FvH4_4g18250 FvH4_4g18250 FvH4_4g18250
malus_domestica	MD13G1167700.v1.1 MD16G1167300.v1.1
prunus_persica	Prupe.1G135100_v2.0.a1 Prupe.1G135100_v2.0.a1 Prupe.1G135100_v2.0.a1
pyrus_communis	pycom13g14330 pycom13g14340 pycom16g14130
rosa_chinensis	RchiOBHm_Chr4g0422421
rosa_laevigata	RLG00000007612
rosa_multiflora	Rmu_ssc0000414.1_g000001 Rmu_ssc0000477.1_g000005
rosa_roxburghii	Rroxscaffold_5G00364520
rosa_rugosa	Rorug04G0180000 Rorug04G0180100
rosa_samantha	Rh4AG239300 Rh4AG239700 Rh4BG242900 Rh4CG254300 Rh4DG238400
rosa_wichuraiana	Rw4G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	254
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccII	CGCG	1 cut(s)	35
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	7 cut(s)	30, 33, 35, 71, 98, 123, 507
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	2 cut(s)	7, 162
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	139, 313
AgsI	TTSAA	4 cut(s)	244, 268, 482, 493
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	2 cut(s)	371, 409
AluI	AGCT	2 cut(s)	371, 409
Alw21I	GWGCWC	1 cut(s)	575
AlwI	GGATC	1 cut(s)	390
AlwNI	CAGNNNCTG	2 cut(s)	139, 323
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	5 cut(s)	7, 105, 127, 141, 162
ApeKI	GCWGC	2 cut(s)	16, 323
ApoI	RAATTY	1 cut(s)	493
AseI	ATTAAT	1 cut(s)	248
AspLEI	GCGC	2 cut(s)	214, 255
AspS9I	GGNCC	2 cut(s)	74, 106
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	138, 441
AvaII	GGWCC	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	575
BbvI	GCAGC	2 cut(s)	28, 310
BccI	CCATC	2 cut(s)	173, 454
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	1 cut(s)	462
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	109
BfmI	CTRYAG	1 cut(s)	624
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	5 cut(s)	17, 30, 33, 36, 324
BlsI	GCNGC	5 cut(s)	18, 31, 34, 37, 325
Bme1390I	CCNGG	2 cut(s)	109, 462
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	74, 106
BmiI	GGNNCC	5 cut(s)	75, 76, 116, 179, 288
BmrFI	CCNGG	2 cut(s)	109, 462
BmsI	GCATC	7 cut(s)	3, 76, 85, 145, 335, 526, 548
BpmI	CTGGAG	2 cut(s)	101, 116
BpuMI	CCSGG	1 cut(s)	109
Bsa29I	ATCGAT	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	2 cut(s)	278, 346
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 313
Bse118I	RCCGGY	4 cut(s)	62, 89, 125, 174
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	2 cut(s)	31, 73
BseAI	TCCGGA	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	462
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	2 cut(s)	139, 313
BseMI	GCAATG	2 cut(s)	31, 73
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	28, 310
BseYI	CCCAGC	1 cut(s)	371
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	5 cut(s)	9, 107, 129, 143, 164
BshVI	ATCGAT	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	575
BsiSI	CCGG	7 cut(s)	63, 90, 109, 126, 175, 279, 347
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	139, 313
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	5 cut(s)	9, 107, 129, 143, 164
Bsp1286I	GDGCHC	1 cut(s)	575
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	382, 529
BspACI	CCGC	7 cut(s)	30, 33, 35, 71, 98, 123, 507
BspANI	GGCC	5 cut(s)	9, 107, 129, 143, 164
BspCNI	CTCAG	1 cut(s)	409
BspDI	ATCGAT	1 cut(s)	168
BspEI	TCCGGA	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	5 cut(s)	75, 76, 116, 179, 288
BspPI	GGATC	1 cut(s)	390
BspQI	GCTCTTC	1 cut(s)	245
BsrDI	GCAATG	2 cut(s)	31, 73
BsrFI	RCCGGY	4 cut(s)	62, 89, 125, 174
BsrI	ACTGG	1 cut(s)	118
BssAI	RCCGGY	4 cut(s)	62, 89, 125, 174
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	382, 529
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	150
Bst6I	CTCTTC	2 cut(s)	219, 245
BstAPI	GCANNNNNTGC	2 cut(s)	323, 520
BstC8I	GCNNGC	3 cut(s)	64, 91, 127
BstDEI	CTNAG	1 cut(s)	417
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	214, 255
BstKTI	GATC	2 cut(s)	385, 532
BstMBI	GATC	2 cut(s)	382, 529
BstMWI	GCNNNNNNNGC	9 cut(s)	35, 41, 68, 95, 104, 161, 218, 323, 520
BstNI	CCWGG	1 cut(s)	462
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	2 cut(s)	107, 460
BstSFI	CTRYAG	1 cut(s)	624
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	28, 310
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
Bsu15I	ATCGAT	1 cut(s)	168
BsuRI	GGCC	5 cut(s)	9, 107, 129, 143, 164
BsuTUI	ATCGAT	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	403
Cac8I	GCNNGC	3 cut(s)	64, 91, 127
CaiI	CAGNNNCTG	2 cut(s)	139, 323
CfoI	GCGC	2 cut(s)	214, 255
Cfr10I	RCCGGY	4 cut(s)	62, 89, 125, 174
Cfr13I	GGNCC	2 cut(s)	74, 106
Cfr42I	CCGCGG	1 cut(s)	36
ClaI	ATCGAT	1 cut(s)	168
CviAII	CATG	4 cut(s)	103, 196, 389, 422
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	2 cut(s)	384, 531
DpnII	GATC	2 cut(s)	382, 529
EaeI	YGGCCR	2 cut(s)	7, 162
Eam1104I	CTCTTC	2 cut(s)	219, 245
EarI	CTCTTC	2 cut(s)	219, 245
EciI	GGCGGA	2 cut(s)	112, 522
Eco47I	GGWCC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	460
EcoT22I	ATGCAT	1 cut(s)	541
FaeI	CATG	4 cut(s)	106, 199, 392, 425
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	4 cut(s)	102, 195, 388, 421
FauI	CCCGC	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	5 cut(s)	17, 30, 33, 36, 324
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	5 cut(s)	17, 30, 33, 36, 324
FspI	TGCGCA	1 cut(s)	254
GlaI	GCGC	2 cut(s)	213, 254
GluI	GCNGC	5 cut(s)	17, 30, 33, 36, 324
GsaI	CCCAGC	1 cut(s)	375
GsuI	CTGGAG	2 cut(s)	101, 116
HaeIII	GGCC	5 cut(s)	9, 107, 129, 143, 164
HapII	CCGG	7 cut(s)	63, 90, 109, 126, 175, 279, 347
HhaI	GCGC	2 cut(s)	214, 255
Hin1II	CATG	4 cut(s)	106, 199, 392, 425
Hin6I	GCGC	2 cut(s)	212, 253
HinP1I	GCGC	2 cut(s)	212, 253
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	7 cut(s)	63, 90, 109, 126, 175, 279, 347
HphI	GGTGA	2 cut(s)	138, 441
Hpy188I	TCNGA	5 cut(s)	286, 331, 368, 418, 433
Hpy188III	TCNNGA	2 cut(s)	347, 533
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	191, 200
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4V	TGCA	4 cut(s)	16, 199, 326, 539
HpyF10VI	GCNNNNNNNGC	9 cut(s)	35, 41, 68, 95, 104, 161, 218, 323, 520
HpyF3I	CTNAG	1 cut(s)	417
Hsp92II	CATG	4 cut(s)	106, 199, 392, 425
HspAI	GCGC	2 cut(s)	212, 253
KflI	GGGWCCC	1 cut(s)	74
Kpn2I	TCCGGA	1 cut(s)	346
KroI	GCCGGC	3 cut(s)	62, 89, 125
KroNI	GCCGGC	3 cut(s)	64, 91, 127
Ksp22I	TGATCA	1 cut(s)	529
KspI	CCGCGG	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	382, 529
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	5 cut(s)	120, 183, 209, 286, 368
Lsp1109I	GCAGC	2 cut(s)	28, 310
LweI	GCATC	7 cut(s)	3, 76, 85, 145, 335, 526, 548
MalI	GATC	2 cut(s)	384, 531
MboI	GATC	2 cut(s)	382, 529
MboII	GAAGA	4 cut(s)	232, 236, 377, 494
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	575
MlsI	TGGCCA	1 cut(s)	9
MluCI	AATT	5 cut(s)	245, 262, 488, 493, 597
MluNI	TGGCCA	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	4 cut(s)	140, 154, 228, 325
Mox20I	TGGCCA	1 cut(s)	9
Mph1103I	ATGCAT	1 cut(s)	541
MroI	TCCGGA	1 cut(s)	346
MroNI	GCCGGC	3 cut(s)	62, 89, 125
MscI	TGGCCA	1 cut(s)	9
MseI	TTAA	3 cut(s)	248, 261, 600
Msp20I	TGGCCA	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	7 cut(s)	63, 90, 109, 126, 175, 279, 347
MspR9I	CCNGG	2 cut(s)	109, 462
MvaI	CCWGG	1 cut(s)	462
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	9 cut(s)	35, 41, 68, 95, 104, 161, 218, 323, 520
NaeI	GCCGGC	3 cut(s)	64, 91, 127
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	2 cut(s)	382, 529
NgoMIV	GCCGGC	3 cut(s)	62, 89, 125
NlaIII	CATG	4 cut(s)	106, 199, 392, 425
NlaIV	GGNNCC	5 cut(s)	75, 76, 116, 179, 288
NsbI	TGCGCA	1 cut(s)	254
NsiI	ATGCAT	1 cut(s)	541
NspI	RCATGY	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdiI	GCCGGC	3 cut(s)	64, 91, 127
PflMI	CCANNNNNTGG	1 cut(s)	139
PkrI	GCNGC	5 cut(s)	18, 31, 34, 37, 325
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PpuMI	RGGWCCY	1 cut(s)	74
PshBI	ATTAAT	1 cut(s)	248
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	5 cut(s)	75, 76, 116, 179, 288
PspPI	GGNCC	2 cut(s)	74, 106
PspPPI	RGGWCCY	1 cut(s)	74
PstNI	CAGNNNCTG	2 cut(s)	139, 323
PsuI	RGATCY	1 cut(s)	382
SacII	CCGCGG	1 cut(s)	36
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	3 cut(s)	248, 261, 600
SatI	GCNGC	5 cut(s)	17, 30, 33, 36, 324
Sau3AI	GATC	2 cut(s)	382, 529
Sau96I	GGNCC	2 cut(s)	74, 106
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	2 cut(s)	109, 462
SduI	GDGCHC	1 cut(s)	575
SetI	ASST	7 cut(s)	192, 261, 301, 373, 411, 439, 529
SfaNI	GCATC	7 cut(s)	3, 76, 85, 145, 335, 526, 548
SfcI	CTRYAG	1 cut(s)	624
Sfr303I	CCGCGG	1 cut(s)	36
SgrBI	CCGCGG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	74
Sse9I	AATT	5 cut(s)	245, 262, 488, 493, 597
SsiI	CCGC	7 cut(s)	30, 33, 35, 71, 98, 123, 507
StyD4I	CCNGG	2 cut(s)	107, 460
TaaI	ACNGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	158, 168
TasI	AATT	5 cut(s)	245, 262, 488, 493, 597
TauI	GCSGC	3 cut(s)	32, 35, 38
Tru1I	TTAA	3 cut(s)	248, 261, 600
Tru9I	TTAA	3 cut(s)	248, 261, 600
TseI	GCWGC	2 cut(s)	16, 323
TspDTI	ATGAA	4 cut(s)	377, 485, 501, 576
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	74
VspI	ATTAAT	1 cut(s)	248
XapI	RAATTY	1 cut(s)	493
XceI	RCATGY	1 cut(s)	425
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.