Rorug04G0180100
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002513
Physical Location & Seq
Reverse (-)
31563227 .. 31564084
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0180100.1

Sequence Viewer

Length: 330 bp
ATGCATGCGGGAACATTTGTGATTCATAATCCTCAGTCGGATCCTGTCCCCTGTAACATCAGTGAAGTCATTAAATGGCACCCTCTTCCGGAGAATTCGGTAAAGTTAAACTTTGATGGTTCGGTCTCTCCTTTAAGTCTGGCAGCAGCGGGGTTTGTAATCAGAAATCATCTTGGTGACCCTATTGCTGTTGGCTCTCGGGCAATTGGTTCCTCATCTGTTCCTGTTGTGGAGTGCTCTGTGCTCAAGGATGGTTTATTAACCGCCCGACGGTTTAATTTTGATCGTGTCTTGGTGGAAGGAGATTCGTCCTTGTCAACAACTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0000902 GO:0000904 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005794 GO:0005795 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0007080 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008608 GO:0009505 GO:0009531 GO:0009653 GO:0009832 GO:0009834 GO:0009888 GO:0009987 GO:0010026 GO:0010087 GO:0010089 GO:0010090 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030154 GO:0030312 GO:0030951 GO:0030952 GO:0031109 GO:0031984 GO:0032502 GO:0032984 GO:0032989 GO:0032991 GO:0035371 GO:0042546 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043624 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048468 GO:0048856 GO:0048869 GO:0050000 GO:0050789 GO:0050794 GO:0051010 GO:0051179 GO:0051234 GO:0051261 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051983 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090058 GO:0090558 GO:0090626 GO:0097435 GO:0098687 GO:0098791 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1903047 GO:1903338 GO:1990752
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kinesin RRM_1

Protein Analysis

109

Amino Acids

11.56

Weight (kDa)

6.01

Isoelectric Point (pI)

60.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 37 - 104 7.4e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 78
AccIII TCCGGA 1 cut(s) 88
AciI CCGC 3 cut(s) 8, 149, 264
AclWI GGATC 2 cut(s) 35, 48
AcsI RAATTY 1 cut(s) 94
AfiI CCNNNNNNNGG 2 cut(s) 88, 270
Alw21I GWGCWC 2 cut(s) 239, 246
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 2 cut(s) 35, 48
Ama87I CYCGRG 1 cut(s) 198
Aor13HI TCCGGA 1 cut(s) 88
ApeKI GCWGC 2 cut(s) 143, 146
ApoI RAATTY 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 198
BamHI GGATCC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 78
Bbv12I GWGCWC 2 cut(s) 239, 246
BbvI GCAGC 2 cut(s) 155, 158
BccI CCATC 2 cut(s) 110, 245
BcoDI GTCTC 1 cut(s) 130
BisI GCNGC 2 cut(s) 144, 147
BlsI GCNGC 2 cut(s) 145, 148
BmeT110I CYCGRG 1 cut(s) 198
BmiI GGNNCC 3 cut(s) 42, 80, 211
BpuEI CTTGAG 1 cut(s) 230
BsaI GGTCTC 1 cut(s) 130
BsaWI WCCGGW 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 270
BseAI TCCGGA 1 cut(s) 88
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 88, 270
BseMII CTCAG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 155, 158
BshNI GGYRCC 1 cut(s) 78
BsiHKAI GWGCWC 2 cut(s) 239, 246
BsiHKCI CYCGRG 1 cut(s) 198
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 88, 270
BsmAI GTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 198
Bsp1286I GDGCHC 2 cut(s) 239, 246
Bsp13I TCCGGA 1 cut(s) 88
Bsp143I GATC 2 cut(s) 40, 283
BspACI CCGC 3 cut(s) 8, 149, 264
BspCNI CTCAG 1 cut(s) 46
BspEI TCCGGA 1 cut(s) 88
BspLI GGNNCC 3 cut(s) 42, 80, 211
BspPI GGATC 2 cut(s) 35, 48
BspT107I GGYRCC 1 cut(s) 78
BspTNI GGTCTC 1 cut(s) 130
BssMI GATC 2 cut(s) 40, 283
Bst4CI ACNGT 2 cut(s) 273, 325
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 33
BstEII GGTNACC 1 cut(s) 176
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 2 cut(s) 43, 286
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 2 cut(s) 40, 283
BstNSI RCATGY 1 cut(s) 8
BstPI GGTNACC 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 155, 158
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 6
CviAII CATG 1 cut(s) 5
CviJI RGCY 1 cut(s) 195
CviKI_1 RGCY 1 cut(s) 195
DdeI CTNAG 1 cut(s) 33
DpnI GATC 2 cut(s) 42, 285
DpnII GATC 2 cut(s) 40, 283
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 198
Eco91I GGTNACC 1 cut(s) 176
EcoO65I GGTNACC 1 cut(s) 176
EcoRI GAATTC 1 cut(s) 94
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 8
FaiI YATR 3 cut(s) 6, 27, 328
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 1 cut(s) 32
FatI CATG 1 cut(s) 4
FauI CCCGC 1 cut(s) 142
Fnu4HI GCNGC 2 cut(s) 144, 147
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 2 cut(s) 144, 147
GluI GCNGC 2 cut(s) 144, 147
HapII CCGG 1 cut(s) 89
Hin1II CATG 1 cut(s) 8
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HinfI GANTC 2 cut(s) 22, 305
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 2 cut(s) 40, 164
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 318
Hpy99I CGWCG 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 2 cut(s) 273, 325
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 33
Hsp92II CATG 1 cut(s) 8
Kpn2I TCCGGA 1 cut(s) 88
Kzo9I GATC 2 cut(s) 40, 283
LpnPI CCDG 5 cut(s) 57, 64, 102, 125, 237
Lsp1109I GCAGC 2 cut(s) 155, 158
MaeIII GTNAC 2 cut(s) 53, 176
MalI GATC 2 cut(s) 42, 285
MboI GATC 2 cut(s) 40, 283
MboII GAAGA 1 cut(s) 77
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 2 cut(s) 239, 246
MluCI AATT 3 cut(s) 94, 204, 277
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 3 cut(s) 42, 93, 223
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 88
MseI TTAA 5 cut(s) 72, 107, 134, 260, 276
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 89
MunI CAATTG 1 cut(s) 204
NdeII GATC 2 cut(s) 40, 283
NlaIII CATG 1 cut(s) 8
NlaIV GGNNCC 3 cut(s) 42, 80, 211
NmuCI GTSAC 1 cut(s) 176
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 22, 305
PkrI GCNGC 2 cut(s) 145, 148
PspEI GGTNACC 1 cut(s) 176
PspN4I GGNNCC 3 cut(s) 42, 80, 211
PsuI RGATCY 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 5 cut(s) 72, 107, 134, 260, 276
SatI GCNGC 2 cut(s) 144, 147
Sau3AI GATC 2 cut(s) 40, 283
SduI GDGCHC 2 cut(s) 239, 246
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SphI GCATGC 1 cut(s) 8
Sse9I AATT 3 cut(s) 94, 204, 277
SsiI CCGC 3 cut(s) 8, 149, 264
TaaI ACNGT 2 cut(s) 273, 325
TaqII GACCGA 1 cut(s) 112
TasI AATT 3 cut(s) 94, 204, 277
TfiI GAWTC 2 cut(s) 22, 305
Tru1I TTAA 5 cut(s) 72, 107, 134, 260, 276
Tru9I TTAA 5 cut(s) 72, 107, 134, 260, 276
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 2 cut(s) 143, 146
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 14
TspRI CASTG 1 cut(s) 67
XapI RAATTY 1 cut(s) 94
XceI RCATGY 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.