Rorug04G0180000
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002513
Physical Location & Seq
Forward (+)
31560634 .. 31561275
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0180000.1

Sequence Viewer

Length: 474 bp
ATGGGTGTCTTCAAGTATGAGTCCGAATTCACCTCTGTTATCCCTCCAGCTAGATTGTTCAAGGCCTTCGTTCTCGATGCTGACAACCTCATCCCTAAGATTGCACCACAGGCAGTTCAGTCCGCTGAGATCCTTGAAGGAGACGGTGGTGCAGGAACCATCAAGAAGATCACCTTCGGCGAAGGTAGCACTTACAGCTATGTGAAGCACAGAATTGATGGCATTGACAAGGAGAACTTTGTCTACAGCTACAGTGTGATTGAGGGAGCTCCTGACTCAATCGAGAAGATCTGCTACGTGACTAAGTTGGTGGCATCCGGCAGTGGTACCGTCATCAAGAGCACCAGTGAATACCATGTCAAGGGTGATGTTGAGATCAAGGAAGAGCACGTCAAGGCAGGGAAAGAGAAGGCTTCTCACCTCTTCAAGGTCATTGAGAACTACCTCTTGGAGCACCACGATGCCTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0000902 GO:0000904 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005794 GO:0005795 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0007080 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008608 GO:0009505 GO:0009531 GO:0009653 GO:0009832 GO:0009834 GO:0009888 GO:0009987 GO:0010026 GO:0010087 GO:0010089 GO:0010090 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030154 GO:0030312 GO:0030951 GO:0030952 GO:0031109 GO:0031984 GO:0032502 GO:0032984 GO:0032989 GO:0032991 GO:0035371 GO:0042546 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043624 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048468 GO:0048856 GO:0048869 GO:0050000 GO:0050789 GO:0050794 GO:0051010 GO:0051179 GO:0051234 GO:0051261 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051983 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090058 GO:0090558 GO:0090626 GO:0097435 GO:0098687 GO:0098791 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1903047 GO:1903338 GO:1990752
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kinesin RRM_1

Protein Analysis

157

Amino Acids

17.3

Weight (kDa)

5.68

Isoelectric Point (pI)

22.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 152 7.3e-23 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 326
AccB1I GGYRCC 1 cut(s) 326
AccI GTMKAC 1 cut(s) 243
AciI CCGC 1 cut(s) 123
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 26
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 2 cut(s) 361, 427
AgsI TTSAA 4 cut(s) 13, 61, 137, 427
AjiI CACGTC 1 cut(s) 391
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 4 cut(s) 50, 198, 249, 269
AluI AGCT 4 cut(s) 50, 198, 249, 269
Alw21I GWGCWC 4 cut(s) 271, 344, 390, 456
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 124
AoxI GGCC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 26
Asp718I GGTACC 1 cut(s) 326
AsuHPI GGTGA 4 cut(s) 22, 163, 377, 410
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 271
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
Bbv12I GWGCWC 4 cut(s) 271, 344, 390, 456
BccI CCATC 2 cut(s) 167, 212
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 2 cut(s) 244, 250
BglII AGATCT 1 cut(s) 288
BmgBI CACGTC 1 cut(s) 391
BmiI GGNNCC 2 cut(s) 157, 328
BmsI GCATC 3 cut(s) 67, 323, 451
BpmI CTGGAG 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 298
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 427
Bse1I ACTGG 1 cut(s) 345
BseGI GGATG 2 cut(s) 90, 314
BseLI CCNNNNNNNGG 2 cut(s) 361, 427
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 345
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 326
BsiHKAI GWGCWC 4 cut(s) 271, 344, 390, 456
BsiSI CCGG 1 cut(s) 318
BslI CCNNNNNNNGG 2 cut(s) 361, 427
BsmAI GTCTC 1 cut(s) 135
BsmBI CGTCTC 1 cut(s) 135
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 4 cut(s) 271, 344, 390, 456
Bsp143I GATC 4 cut(s) 129, 168, 288, 375
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 157, 328
BspPI GGATC 1 cut(s) 124
BspQI GCTCTTC 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 326
BsrI ACTGG 1 cut(s) 345
BssMI GATC 4 cut(s) 129, 168, 288, 375
Bst4CI ACNGT 3 cut(s) 146, 254, 331
Bst6I CTCTTC 2 cut(s) 378, 428
BstBAI YACGTR 1 cut(s) 298
BstDEI CTNAG 3 cut(s) 96, 126, 303
BstENI CCTNNNNNAGG 1 cut(s) 425
BstF5I GGATG 2 cut(s) 90, 314
BstKTI GATC 4 cut(s) 132, 171, 291, 378
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 4 cut(s) 129, 168, 288, 375
BstMWI GCNNNNNNNGC 3 cut(s) 110, 186, 195
BstSFI CTRYAG 2 cut(s) 244, 250
BstX2I RGATCY 2 cut(s) 129, 288
BstYI RGATCY 2 cut(s) 129, 288
BsuRI GGCC 1 cut(s) 65
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 2 cut(s) 90, 314
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 3 cut(s) 259, 328, 352
Csp6I GTAC 1 cut(s) 327
CviAII CATG 1 cut(s) 356
CviJI RGCY 6 cut(s) 50, 65, 198, 249, 269, 413
CviKI_1 RGCY 6 cut(s) 50, 65, 198, 249, 269, 413
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 3 cut(s) 96, 126, 303
DpnI GATC 4 cut(s) 131, 170, 290, 377
DpnII GATC 4 cut(s) 129, 168, 288, 375
Eam1104I CTCTTC 2 cut(s) 378, 428
EarI CTCTTC 2 cut(s) 378, 428
Ecl136II GAGCTC 1 cut(s) 269
Eco147I AGGCCT 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 425
EcoRI GAATTC 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 1 cut(s) 359
FaiI YATR 3 cut(s) 18, 201, 357
FalI AAGNNNNNCTT 4 cut(s) 158, 190, 221, 253
FatI CATG 1 cut(s) 355
FblI GTMKAC 1 cut(s) 243
FokI GGATG 2 cut(s) 77, 301
FriOI GRGCYC 1 cut(s) 271
FspBI CTAG 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 318
Hin1II CATG 1 cut(s) 359
HinfI GANTC 2 cut(s) 20, 275
HpaII CCGG 1 cut(s) 318
HphI GGTGA 4 cut(s) 22, 163, 377, 410
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 5 cut(s) 74, 163, 272, 283, 337
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 5 cut(s) 76, 131, 176, 184, 403
HpyCH4III ACNGT 3 cut(s) 146, 254, 331
HpyCH4IV ACGT 2 cut(s) 297, 390
HpyCH4V TGCA 2 cut(s) 104, 152
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 186, 195
HpyF3I CTNAG 3 cut(s) 96, 126, 303
HpySE526I ACGT 2 cut(s) 297, 390
Hsp92II CATG 1 cut(s) 359
KpnI GGTACC 1 cut(s) 330
Kzo9I GATC 4 cut(s) 129, 168, 288, 375
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 3 cut(s) 266, 274, 451
LpnPI CCDG 7 cut(s) 60, 95, 138, 285, 331, 358, 384
LweI GCATC 3 cut(s) 67, 323, 451
MaeI CTAG 1 cut(s) 51
MaeII ACGT 2 cut(s) 297, 390
MaeIII GTNAC 1 cut(s) 298
MalI GATC 4 cut(s) 131, 170, 290, 377
MboI GATC 4 cut(s) 129, 168, 288, 375
MboII GAAGA 4 cut(s) 178, 298, 395, 415
MflI RGATCY 2 cut(s) 129, 288
MhlI GDGCHC 4 cut(s) 271, 344, 390, 456
MluCI AATT 2 cut(s) 26, 213
MlyI GAGTC 2 cut(s) 29, 269
MnlI CCTC 6 cut(s) 43, 54, 98, 256, 431, 455
MslI CAYNNNNRTG 1 cut(s) 459
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 1 cut(s) 318
MwoI GCNNNNNNNGC 3 cut(s) 110, 186, 195
NdeII GATC 4 cut(s) 129, 168, 288, 375
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 2 cut(s) 157, 328
NmuCI GTSAC 1 cut(s) 298
PceI AGGCCT 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 378
PleI GAGTC 2 cut(s) 28, 269
PpsI GAGTC 2 cut(s) 28, 269
Ppu21I YACGTR 1 cut(s) 298
Psp124BI GAGCTC 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 157, 328
PsrI GAACNNNNNNTAC 2 cut(s) 227, 259
PsuI RGATCY 2 cut(s) 129, 288
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
RseI CAYNNNNRTG 1 cut(s) 459
SacI GAGCTC 1 cut(s) 271
SapI GCTCTTC 1 cut(s) 378
Sau3AI GATC 4 cut(s) 129, 168, 288, 375
SchI GAGTC 2 cut(s) 29, 269
SduI GDGCHC 4 cut(s) 271, 344, 390, 456
SfaNI GCATC 3 cut(s) 67, 323, 451
SfcI CTRYAG 2 cut(s) 244, 250
SmiMI CAYNNNNRTG 1 cut(s) 459
Sse9I AATT 2 cut(s) 26, 213
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 51
SstI GAGCTC 1 cut(s) 271
StuI AGGCCT 1 cut(s) 65
TaaI ACNGT 3 cut(s) 146, 254, 331
TaiI ACGT 2 cut(s) 300, 393
TaqI TCGA 2 cut(s) 75, 282
TasI AATT 2 cut(s) 26, 213
TscAI CASTG 3 cut(s) 259, 328, 352
TseFI GTSAC 1 cut(s) 298
Tsp45I GTSAC 1 cut(s) 298
TspRI CASTG 3 cut(s) 259, 328, 352
XagI CCTNNNNNAGG 1 cut(s) 425
XapI RAATTY 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.