Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017863

Physical Location & Seq

Genomic Coordinates Reverse (-)

11204025 .. 11206882

Gene Structure 2858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGGCGGGGCTTCCGTCATCAACAACGGCATTCACATTCCCCTGAAATTCAACTCAGACCTTCCTAGGGTTTCATCACGATCCCCAGCCCCAAAATGGAGTAGGCCTCACTATATTCACCGTCTTGTTCTTCGCCACTGCACATGTCTTTCCCTTCTCTTCCCTTCAATCTGCTGTTCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009791 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0055035 GO:0061024 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TerC

Protein Analysis

61

Amino Acids

6.77

Weight (kDa)

9.93

Isoelectric Point (pI)

82.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017863)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00008920 Rroxscaffold_1G00025180 Rroxscaffold_3G00220930 Rroxscaffold_5G00340160
rosa_rugosa	Rorug04G0066400 Rorug04G0066500
rosa_samantha	Rh3BG059200 Rh3CG162900 Rh3DG059700 Rh6DG319200 Rh7AG143800 Rh7BG328400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	67, 96
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	52, 168
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	47
AspA2I	CCTAGG	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	110
AvrII	CCTAGG	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	43
BfaI	CTAG	2 cut(s)	66, 180
BlnI	CCTAGG	1 cut(s)	65
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 96
BseDI	CCNNGG	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	67, 96
BseMII	CTCAG	1 cut(s)	69
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	106
BslI	CCNNNNNNNGG	2 cut(s)	67, 96
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	80
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	68
BspPI	GGATC	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	106
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	4 cut(s)	11, 89, 106, 183
CviKI_1	RGCY	4 cut(s)	11, 89, 106, 183
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	65
Eco147I	AGGCCT	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	1 cut(s)	147
FaiI	YATR	2 cut(s)	114, 145
FatI	CATG	1 cut(s)	143
FspBI	CTAG	2 cut(s)	66, 180
GsaI	CCCAGC	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	106
Hin1II	CATG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	1 cut(s)	78
HpyAV	CCTTC	3 cut(s)	71, 164, 174
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	1 cut(s)	55
Hsp92II	CATG	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	80
LpnPI	CCDG	2 cut(s)	56, 99
MaeI	CTAG	2 cut(s)	66, 180
MalI	GATC	1 cut(s)	82
MboI	GATC	1 cut(s)	80
MboII	GAAGA	2 cut(s)	122, 151
MluCI	AATT	1 cut(s)	47
MnlI	CCTC	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	180
NdeII	GATC	1 cut(s)	80
NlaIII	CATG	1 cut(s)	147
NspI	RCATGY	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	106
PciI	ACATGT	1 cut(s)	143
PctI	GAATGC	1 cut(s)	30
PscI	ACATGT	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	80
SetI	ASST	2 cut(s)	63, 185
SgeI	CNNG	7 cut(s)	19, 55, 78, 90, 98, 137, 156
Sse9I	AATT	1 cut(s)	47
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	2 cut(s)	66, 180
StuI	AGGCCT	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	122
TasI	AATT	1 cut(s)	47
TscAI	CASTG	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	47
XceI	RCATGY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	93
XmaJI	CCTAGG	1 cut(s)	65
XspI	CTAG	2 cut(s)	66, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.