Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017863

Physical Location & Seq

Genomic Coordinates Reverse (-)

3537211 .. 3540107

Gene Structure 2897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGGCGGGGCTTCCGTCATCAACAACGGCATTCACATTCCCCTGAAATTCAACTCAGACCTTCCTAGGGTTTCATCACGATCCCCAGCCCCAAAATGGAGTAGGCCTCACTATATTCACCGTCTTGTTCTTCGCCACTGCACATGTGGTGGCCATGGTCGACAGTCTGTCAATTGTGTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009791 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0055035 GO:0061024 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TerC

Protein Analysis

61

Amino Acids

6.76

Weight (kDa)

10.86

Isoelectric Point (pI)

79.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017863)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00008920 Rroxscaffold_1G00025180 Rroxscaffold_3G00220930 Rroxscaffold_5G00340160
rosa_rugosa	Rorug04G0066400 Rorug04G0066500
rosa_samantha	Rh3BG059200 Rh3CG162900 Rh3DG059700 Rh6DG319200 Rh7AG143800 Rh7BG328400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	67, 96
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	52
AhdI	GACNNNNNGTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	2 cut(s)	104, 151
ApoI	RAATTY	1 cut(s)	47
AspA2I	CCTAGG	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	110
AvrII	CCTAGG	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	153
BceAI	ACGGC	1 cut(s)	43
BfaI	CTAG	2 cut(s)	66, 184
BlnI	CCTAGG	1 cut(s)	65
BmeRI	GACNNNNNGTC	1 cut(s)	167
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
BsaJI	CCNNGG	2 cut(s)	65, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 96
BseDI	CCNNGG	2 cut(s)	65, 154
BseLI	CCNNNNNNNGG	2 cut(s)	67, 96
BseMII	CTCAG	1 cut(s)	69
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	106, 153
BslI	CCNNNNNNNGG	2 cut(s)	67, 96
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	106, 153
Bsp143I	GATC	1 cut(s)	80
Bsp19I	CCATGG	1 cut(s)	154
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	106, 153
BspCNI	CTCAG	1 cut(s)	68
BspPI	GGATC	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	65, 154
BssMI	GATC	1 cut(s)	80
BssT1I	CCWWGG	2 cut(s)	65, 154
Bst4CI	ACNGT	2 cut(s)	122, 165
BstDEI	CTNAG	1 cut(s)	55
BstDSI	CCRYGG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	106, 153
BtgI	CCRYGG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
CviAII	CATG	2 cut(s)	144, 155
CviJI	RGCY	4 cut(s)	11, 89, 106, 153
CviKI_1	RGCY	4 cut(s)	11, 89, 106, 153
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
DriI	GACNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	151
Eam1105I	GACNNNNNGTC	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	65, 154
Eco147I	AGGCCT	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	65, 154
ErhI	CCWWGG	2 cut(s)	65, 154
FaeI	CATG	2 cut(s)	147, 158
FaiI	YATR	3 cut(s)	114, 145, 156
FatI	CATG	2 cut(s)	143, 154
FblI	GTMKAC	1 cut(s)	160
FspBI	CTAG	2 cut(s)	66, 184
GsaI	CCCAGC	1 cut(s)	89
HaeIII	GGCC	2 cut(s)	106, 153
Hin1II	CATG	2 cut(s)	147, 158
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	1 cut(s)	78
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	122, 165
HpyCH4V	TGCA	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	55
Hsp92II	CATG	2 cut(s)	147, 158
Kzo9I	GATC	1 cut(s)	80
LpnPI	CCDG	2 cut(s)	56, 99
MaeI	CTAG	2 cut(s)	66, 184
MalI	GATC	1 cut(s)	82
MboI	GATC	1 cut(s)	80
MboII	GAAGA	1 cut(s)	122
MfeI	CAATTG	1 cut(s)	172
MlsI	TGGCCA	1 cut(s)	153
MluCI	AATT	2 cut(s)	47, 172
MluNI	TGGCCA	1 cut(s)	153
MnlI	CCTC	1 cut(s)	117
Mox20I	TGGCCA	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	153
MunI	CAATTG	1 cut(s)	172
Mva1269I	GAATGC	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	154
NdeII	GATC	1 cut(s)	80
NlaIII	CATG	2 cut(s)	147, 158
NspI	RCATGY	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	106
PciI	ACATGT	1 cut(s)	143
PctI	GAATGC	1 cut(s)	30
PscI	ACATGT	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	85
SalI	GTCGAC	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	80
SetI	ASST	1 cut(s)	63
SgeI	CNNG	8 cut(s)	19, 55, 78, 90, 98, 137, 156, 167
Sse9I	AATT	2 cut(s)	47, 172
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	2 cut(s)	66, 184
StuI	AGGCCT	1 cut(s)	106
StyI	CCWWGG	2 cut(s)	65, 154
TaaI	ACNGT	2 cut(s)	122, 165
TaqI	TCGA	1 cut(s)	160
TasI	AATT	2 cut(s)	47, 172
TscAI	CASTG	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	47
XceI	RCATGY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	2 cut(s)	93, 143
XmaJI	CCTAGG	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	2 cut(s)	66, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.