Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0017863

Physical Location & Seq

Genomic Coordinates Forward (+)

4040742 .. 4044311

Gene Structure 3570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG059700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGAAAATGATATTGCCATTGTTTTCCAGGGATCACAGTGTTGCTATCAATTGAAGTGCTGGGATGGGCTCCTGTTACTGGGAAGTACGTCATTTGAATTTGGCACCAATTCTCTTCCTCTTAGCCATGGGCGGGGGGCTTCCGTCATCAACAACGGCATTCACATTCCCCTGAAATTCGACTCAGACCTTCCTAGGGTTTCATCACGATCCCCAGCCCCAAAATGGAGTAGGCCTCACTATCACCATCTTGTTCTTCGCCACCGCGCAGGTGGTGGCCATGGTCGACAGTCTGTCAATTATGTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009791 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0055035 GO:0061024 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TerC

Protein Analysis

103

Amino Acids

11.44

Weight (kDa)

9.3

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017863)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00008920 Rroxscaffold_1G00025180 Rroxscaffold_3G00220930 Rroxscaffold_5G00340160
rosa_rugosa	Rorug04G0066400 Rorug04G0066500
rosa_samantha	Rh3BG059200 Rh3CG162900 Rh3DG059700 Rh6DG319200 Rh7AG143800 Rh7BG328400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	286
AccII	CGCG	1 cut(s)	267
AciI	CCGC	2 cut(s)	133, 265
AclWI	GGATC	2 cut(s)	40, 204
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	2 cut(s)	98, 176
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	4 cut(s)	79, 133, 196, 225
AgsI	TTSAA	2 cut(s)	55, 98
AhdI	GACNNNNNGTC	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	27
AlwI	GGATC	2 cut(s)	40, 204
AoxI	GGCC	2 cut(s)	233, 277
ApoI	RAATTY	2 cut(s)	98, 176
AspA2I	CCTAGG	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	236
AvrII	CCTAGG	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	72
BccI	CCATC	2 cut(s)	59, 255
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	29
BfaI	CTAG	2 cut(s)	195, 310
BfuAI	ACCTGC	1 cut(s)	260
BlnI	CCTAGG	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	29
BmeRI	GACNNNNNGTC	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	71, 106
BmrFI	CCNGG	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	89
BmuI	ACTGGG	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	220, 252
BsaJI	CCNNGG	4 cut(s)	28, 127, 194, 280
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 133, 196, 225
Bse1I	ACTGG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	4 cut(s)	28, 127, 194, 280
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	4 cut(s)	79, 133, 196, 225
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	84
BseYI	CCCAGC	2 cut(s)	60, 214
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	235, 279
BshNI	GGYRCC	1 cut(s)	104
BslI	CCNNNNNNNGG	4 cut(s)	79, 133, 196, 225
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	2 cut(s)	235, 279
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	32, 209
Bsp19I	CCATGG	2 cut(s)	127, 280
BspACI	CCGC	2 cut(s)	133, 265
BspANI	GGCC	2 cut(s)	235, 279
BspCNI	CTCAG	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	71, 106
BspMI	ACCTGC	1 cut(s)	260
BspPI	GGATC	2 cut(s)	40, 204
BspT107I	GGYRCC	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	4 cut(s)	28, 127, 194, 280
BssMI	GATC	2 cut(s)	32, 209
BssT1I	CCWWGG	3 cut(s)	127, 194, 280
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	39, 291
Bst6I	CTCTTC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	122, 184
BstDSI	CCRYGG	2 cut(s)	127, 280
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	2 cut(s)	35, 212
BstMBI	GATC	2 cut(s)	32, 209
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstUI	CGCG	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	235, 279
BtgI	CCRYGG	2 cut(s)	127, 280
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	44
BveI	ACCTGC	1 cut(s)	260
CfoI	GCGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	2 cut(s)	128, 281
CviJI	RGCY	6 cut(s)	70, 126, 140, 218, 235, 279
CviKI_1	RGCY	6 cut(s)	70, 126, 140, 218, 235, 279
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	2 cut(s)	122, 184
DpnI	GATC	2 cut(s)	34, 211
DpnII	GATC	2 cut(s)	32, 209
DriI	GACNNNNNGTC	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	120
Eam1105I	GACNNNNNGTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	120
Eco130I	CCWWGG	3 cut(s)	127, 194, 280
Eco147I	AGGCCT	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	3 cut(s)	127, 194, 280
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	3 cut(s)	127, 194, 280
FaeI	CATG	2 cut(s)	131, 284
FaiI	YATR	3 cut(s)	129, 282, 303
FatI	CATG	2 cut(s)	127, 280
FauI	CCCGC	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	286
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	72
FspBI	CTAG	2 cut(s)	195, 310
GlaI	GCGC	1 cut(s)	268
GsaI	CCCAGC	2 cut(s)	64, 218
HaeIII	GGCC	2 cut(s)	235, 279
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	2 cut(s)	131, 284
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	287
HindII	GTYRAC	1 cut(s)	287
HinfI	GANTC	1 cut(s)	182
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	207
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	2 cut(s)	39, 291
HpyCH4IV	ACGT	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	122, 184
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	131, 284
HspAI	GCGC	1 cut(s)	267
Kzo9I	GATC	2 cut(s)	32, 209
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	8 cut(s)	14, 41, 46, 65, 86, 185, 228, 255
MaeI	CTAG	2 cut(s)	195, 310
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	2 cut(s)	34, 211
MboI	GATC	2 cut(s)	32, 209
MboII	GAAGA	2 cut(s)	107, 248
MfeI	CAATTG	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	72
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	5 cut(s)	50, 98, 109, 176, 298
MluNI	TGGCCA	1 cut(s)	279
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	2 cut(s)	129, 246
Mox20I	TGGCCA	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	29
MunI	CAATTG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	267
NcoI	CCATGG	2 cut(s)	127, 280
NdeII	GATC	2 cut(s)	32, 209
NlaIII	CATG	2 cut(s)	131, 284
NlaIV	GGNNCC	2 cut(s)	71, 106
PaqCI	CACCTGC	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	235
PctI	GAATGC	1 cut(s)	159
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	27
PspFI	CCCAGC	2 cut(s)	60, 214
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	71, 106
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SalI	GTCGAC	1 cut(s)	285
Sau3AI	GATC	2 cut(s)	32, 209
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	3 cut(s)	92, 192, 274
Sse9I	AATT	5 cut(s)	50, 98, 109, 176, 298
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	2 cut(s)	133, 265
SspMI	CTAG	2 cut(s)	195, 310
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	3 cut(s)	127, 194, 280
TaaI	ACNGT	2 cut(s)	39, 291
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	2 cut(s)	180, 286
TasI	AATT	5 cut(s)	50, 98, 109, 176, 298
TscAI	CASTG	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	192
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	44
XapI	RAATTY	2 cut(s)	98, 176
XcmI	CCANNNNNNNNNTGG	2 cut(s)	222, 269
XmaJI	CCTAGG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	286
XspI	CTAG	2 cut(s)	195, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.