Rh3CG162900

Integral membrane protein TerC family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017863
Physical Location & Seq
Forward (+)
13698991 .. 13702998
4008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG162900.1

Sequence Viewer

Length: 711 bp
ATGGGCGTGGCTTCCGTCATCCACAACGGCGTTCGCATTCCTCTCAAATTCAACTCCGACCTTCCTAGGGTTTCATCACGATCCCCAGCCCCAAAATGGAGCAGACCTTACTCCATTCACCATCTTGTTCTTCGCCTCCGCACAGGTGGTGGTCATGGTCGGCAGTCTGTGCCAATTGTGTGTTCTAGAGCAACGGAGCAGGACGATGATGTATTTACTTCAGAAGGCGAGAGGATTGATCCTCAGTCATATGATGGCATTAGTAATGTGGACACTTCTCACACTTCCACTCCGGATAAATCTAAGGGAGCTGAAGCCTACCTGCTTATGATGGCAATCGATTTTTTACAATTCAAGAGGGTCGACTCTATACCAGCAGTTTTTGGAATTACTCGGGATCCTTTCATAGTTTTCACTTCCAATCTATTTGCCATCGTAGGTTTAAGGTCGCTTTACACACTCATTTCTGAGGGTATGGCAGACTTGGAGTATTTACAGCCGTCAATCGGTGTTGTTCTGGGCTTTATTGGGTGTAAAATGATCCTGGATTTTTTTGGGTTCCACATATCAACGGAGGTCTCAGAGCAGTGTAAGGAACACGCAGATGGGAAACATGTGAGGTTCAAGTTCGAAGGAAGTCGTGGAATGGGCTTGCCGCGGGTGATACGGAGACTGAAAATTCCTCTTCATCCAACAACGACAAACCAATAA

Protein Analysis

236

Amino Acids

26.22

Weight (kDa)

8.79

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TerC PF03741 121 - 183 4e-17 Integral membrane protein TerC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 330
AccI GTMKAC 1 cut(s) 363
AccII CGCG 1 cut(s) 658
AccIII TCCGGA 1 cut(s) 292
AciI CCGC 3 cut(s) 139, 656, 658
AclWI GGATC 5 cut(s) 75, 233, 392, 405, 535
AcsI RAATTY 2 cut(s) 47, 678
AcuI CTGAAG 2 cut(s) 204, 333
AfiI CCNNNNNNNGG 3 cut(s) 67, 96, 506
AflIII ACRYGT 1 cut(s) 613
AgsI TTSAA 3 cut(s) 52, 355, 625
AjnI CCWGG 1 cut(s) 543
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
Alw26I GTCTC 2 cut(s) 583, 664
AlwI GGATC 5 cut(s) 75, 233, 392, 405, 535
Ama87I CYCGRG 1 cut(s) 393
Aor13HI TCCGGA 1 cut(s) 292
ApoI RAATTY 2 cut(s) 47, 678
AspA2I CCTAGG 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 110, 673
AsuII TTCGAA 1 cut(s) 630
AvaI CYCGRG 1 cut(s) 393
AvrII CCTAGG 1 cut(s) 65
BamHI GGATCC 1 cut(s) 397
BccI CCATC 5 cut(s) 129, 248, 325, 440, 599
BceAI ACGGC 2 cut(s) 43, 484
BciT130I CCWGG 1 cut(s) 545
BcoDI GTCTC 2 cut(s) 583, 664
BfaI CTAG 2 cut(s) 66, 186
BfuAI ACCTGC 1 cut(s) 330
BisI GCNGC 1 cut(s) 656
BlnI CCTAGG 1 cut(s) 65
BlsI GCNGC 1 cut(s) 657
Bme1390I CCNGG 1 cut(s) 545
BmeT110I CYCGRG 1 cut(s) 393
BmiI GGNNCC 2 cut(s) 399, 560
BmrFI CCNGG 1 cut(s) 545
Bpu14I TTCGAA 1 cut(s) 630
Bsa29I ATCGAT 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 583
BsaJI CCNNGG 2 cut(s) 65, 656
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 96, 506
Bse8I GATNNNNATC 1 cut(s) 335
BseAI TCCGGA 1 cut(s) 292
BseBI CCWGG 1 cut(s) 545
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 65, 656
BseGI GGATG 2 cut(s) 18, 688
BseJI GATNNNNATC 1 cut(s) 335
BseLI CCNNNNNNNGG 3 cut(s) 67, 96, 506
BseMII CTCAG 3 cut(s) 257, 459, 594
BseYI CCCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 658
BshVI ATCGAT 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 393
BsiSI CCGG 1 cut(s) 293
BslI CCNNNNNNNGG 3 cut(s) 67, 96, 506
BsmAI GTCTC 2 cut(s) 583, 664
BsmI GAATGC 1 cut(s) 36
Bso31I GGTCTC 1 cut(s) 583
BsoBI CYCGRG 1 cut(s) 393
Bsp119I TTCGAA 1 cut(s) 630
Bsp13I TCCGGA 1 cut(s) 292
Bsp143I GATC 4 cut(s) 80, 238, 397, 540
BspACI CCGC 3 cut(s) 139, 656, 658
BspCNI CTCAG 3 cut(s) 256, 460, 593
BspDI ATCGAT 1 cut(s) 339
BspEI TCCGGA 1 cut(s) 292
BspFNI CGCG 1 cut(s) 658
BspLI GGNNCC 2 cut(s) 399, 560
BspMI ACCTGC 1 cut(s) 330
BspPI GGATC 5 cut(s) 75, 233, 392, 405, 535
BspT104I TTCGAA 1 cut(s) 630
BspTNI GGTCTC 1 cut(s) 583
BssECI CCNNGG 2 cut(s) 65, 656
BssMI GATC 4 cut(s) 80, 238, 397, 540
BssT1I CCWWGG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 545
Bst6I CTCTTC 1 cut(s) 690
BstAPI GCANNNNNTGC 1 cut(s) 169
BstBI TTCGAA 1 cut(s) 630
BstC8I GCNNGC 1 cut(s) 653
BstDEI CTNAG 4 cut(s) 243, 303, 468, 580
BstDSI CCRYGG 1 cut(s) 656
BstF5I GGATG 2 cut(s) 18, 688
BstFNI CGCG 1 cut(s) 658
BstKTI GATC 4 cut(s) 83, 241, 400, 543
BstMAI GTCTC 2 cut(s) 583, 664
BstMBI GATC 4 cut(s) 80, 238, 397, 540
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNI CCWGG 1 cut(s) 545
BstNSI RCATGY 1 cut(s) 617
BstSCI CCNGG 1 cut(s) 543
BstUI CGCG 1 cut(s) 658
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
Bsu15I ATCGAT 1 cut(s) 339
BsuTUI ATCGAT 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 656
BtsCI GGATG 2 cut(s) 18, 688
BtsI GCAGTG 1 cut(s) 593
BtsIMutI CAGTG 1 cut(s) 593
BveI ACCTGC 1 cut(s) 330
Cac8I GCNNGC 1 cut(s) 653
Cfr42I CCGCGG 1 cut(s) 659
ClaI ATCGAT 1 cut(s) 339
CviAII CATG 2 cut(s) 155, 614
CviJI RGCY 7 cut(s) 11, 89, 311, 317, 499, 522, 651
CviKI_1 RGCY 7 cut(s) 11, 89, 311, 317, 499, 522, 651
DdeI CTNAG 4 cut(s) 243, 303, 468, 580
DpnI GATC 4 cut(s) 82, 240, 399, 542
DpnII GATC 4 cut(s) 80, 238, 397, 540
Eam1104I CTCTTC 1 cut(s) 690
EarI CTCTTC 1 cut(s) 690
Eco130I CCWWGG 1 cut(s) 65
Eco31I GGTCTC 1 cut(s) 583
Eco57I CTGAAG 2 cut(s) 204, 333
Eco88I CYCGRG 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 543
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 2 cut(s) 158, 617
FaiI YATR 9 cut(s) 156, 250, 252, 329, 371, 407, 476, 566, 615
FatI CATG 2 cut(s) 154, 613
FauI CCCGC 1 cut(s) 651
FauNDI CATATG 1 cut(s) 250
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 656
FokI GGATG 2 cut(s) 5, 675
Fsp4HI GCNGC 1 cut(s) 656
FspBI CTAG 2 cut(s) 66, 186
GluI GCNGC 1 cut(s) 656
GsaI CCCAGC 1 cut(s) 89
HapII CCGG 1 cut(s) 293
Hin1II CATG 2 cut(s) 158, 617
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 1 cut(s) 365
HpaII CCGG 1 cut(s) 293
HphI GGTGA 2 cut(s) 110, 673
Hpy166II GTNNAC 2 cut(s) 271, 364
Hpy188I TCNGA 4 cut(s) 58, 223, 469, 583
Hpy188III TCNNGA 5 cut(s) 78, 186, 293, 355, 395
Hpy8I GTNNAC 2 cut(s) 271, 364
HpyAV CCTTC 3 cut(s) 71, 218, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 4 cut(s) 243, 303, 468, 580
Hsp92II CATG 2 cut(s) 158, 617
Kpn2I TCCGGA 1 cut(s) 292
KspI CCGCGG 1 cut(s) 659
Kzo9I GATC 4 cut(s) 80, 238, 397, 540
LmnI GCTCC 3 cut(s) 99, 196, 308
LpnPI CCDG 9 cut(s) 99, 129, 185, 306, 335, 387, 503, 530, 557
MaeI CTAG 2 cut(s) 66, 186
MalI GATC 4 cut(s) 82, 240, 399, 542
MboI GATC 4 cut(s) 80, 238, 397, 540
MboII GAAGA 2 cut(s) 122, 677
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 1 cut(s) 397
MluCI AATT 5 cut(s) 47, 174, 350, 387, 678
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 9 cut(s) 51, 146, 225, 252, 351, 463, 568, 612, 693
MroI TCCGGA 1 cut(s) 292
MseI TTAA 1 cut(s) 443
MslI CAYNNNNRTG 1 cut(s) 603
MspA1I CMGCKG 1 cut(s) 658
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 545
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 36
MvaI CCWGG 1 cut(s) 545
MvnI CGCG 1 cut(s) 658
MwoI GCNNNNNNNGC 1 cut(s) 169
NdeI CATATG 1 cut(s) 250
NdeII GATC 4 cut(s) 80, 238, 397, 540
NlaIII CATG 2 cut(s) 158, 617
NlaIV GGNNCC 2 cut(s) 399, 560
NspI RCATGY 1 cut(s) 617
NspV TTCGAA 1 cut(s) 630
PciI ACATGT 1 cut(s) 613
PctI GAATGC 1 cut(s) 36
PfoI TCCNGGA 1 cut(s) 543
PkrI GCNGC 1 cut(s) 657
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
PscI ACATGT 1 cut(s) 613
Psp6I CCWGG 1 cut(s) 543
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 2 cut(s) 399, 560
PsuI RGATCY 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 603
SacII CCGCGG 1 cut(s) 659
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 1 cut(s) 656
Sau3AI GATC 4 cut(s) 80, 238, 397, 540
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 545
SetI ASST 9 cut(s) 63, 109, 148, 313, 324, 442, 449, 579, 623
Sfr303I CCGCGG 1 cut(s) 659
SfuI TTCGAA 1 cut(s) 630
SgrBI CCGCGG 1 cut(s) 659
SmiMI CAYNNNNRTG 1 cut(s) 603
Sse9I AATT 5 cut(s) 47, 174, 350, 387, 678
SsiI CCGC 3 cut(s) 139, 656, 658
SspMI CTAG 2 cut(s) 66, 186
StyD4I CCNGG 1 cut(s) 543
StyI CCWWGG 1 cut(s) 65
TaqI TCGA 3 cut(s) 339, 363, 630
TasI AATT 5 cut(s) 47, 174, 350, 387, 678
TauI GCSGC 1 cut(s) 658
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TscAI CASTG 1 cut(s) 593
TspDTI ATGAA 3 cut(s) 63, 394, 677
TspGWI ACGGA 4 cut(s) 4, 209, 587, 682
TspRI CASTG 1 cut(s) 593
XapI RAATTY 2 cut(s) 47, 678
XbaI TCTAGA 1 cut(s) 185
XceI RCATGY 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 93
XmaJI CCTAGG 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 2 cut(s) 66, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.