Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0017863

Physical Location & Seq

Genomic Coordinates Reverse (-)

10216209 .. 10222837

Gene Structure 6629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0066400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAAGAAATACGTGAGGCTGCTTTAGCTTACTACCATAACTTGCCAGAAGACCTACAGAAGCTGGCATCAGAAAAATTCAAAGAAATTGATTCAAATGGTAATGGCACAATAAGCATCAGGGAATTCAAGAAGAGTATGGGAAGCTCTTTCGACAATGACTCCGTGATCATGAAGAGAAGCTTCAAGGAGCTGGACAAGAACGGAGACGGCAAGTTGGATTTCAACGAATACATCACTCTTTACTACCTTGTAGAGAGCGGTAGGGTGCTGATTTATTGTGCGGGCGATGGATGTGAGGCCGCACCTTTTCTCAAGGGACTCTATTTTACTTGCGTCGACTGCTTCCACCATAACGAAAATGAAACTTTCGATCTCTGCACCTCCTGCTACCGCAATGCTGACTTTGTTCATGAACACACCAACTTTGTGGATAACCATGTGTTGCTTCGTTCCAAGGCTGCTTGTTGTGAATCCACATCTGAGCCATGCTCTTCTGGGTCTGATTCTGAGTCCAATCAAGTTAGTCGATCTGGATCAAAGAGAGTGGAAGTTAAGCGATCTGGATCAAAGAGGAGGGCAGTATTTGGAGCAATCAAATCTGGAGTGGGCGTTGCACAGGCAGTAGGAAATGTTGCAGCTGATGCTGCTTCATGCAGCATTATCTTCCGCTATTTGGGCCAGTGCGTCGAATCCGATCAAATCAAAGCTGCCATTTCGCTTGCTCGAAAAGATGTTGCCCCCAATCCCTGCAGGGATAATCTGGGTCATGCCCCCACGCTTCGCAAGTGTCGTGGCCGTCTCACCCCGCATCTGCGAGGGTATGGACCATCTCGCCCCACGTCCTGTGGTGGCGAAGCCAGCTTATCCCGCGTCTTGCGGAGGCAAGGACCATCTCACCCCACGTCCTGTGGCGGCGATAAGATCACCTCGCCCCACATCCTGTGGTGGCGAAGCCTTCTTACCCCTCGTCCTGCGGAGGCAATGACCATCTTGCCCCACGTCCTGTGGTGGCGACAAAGACCACCTCGCCCCAAGTCCTGTGGTGGCGAGGCCTGCTTGTCCCGTGTTACATCTCGAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009791 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0055035 GO:0061024 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TerC

Protein Analysis

361

Amino Acids

39.83

Weight (kDa)

8.77

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	25 - 83	7.4e-11	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017863)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00008920 Rroxscaffold_1G00025180 Rroxscaffold_3G00220930 Rroxscaffold_5G00340160
rosa_rugosa	Rorug04G0066400 Rorug04G0066500
rosa_samantha	Rh3BG059200 Rh3CG162900 Rh3DG059700 Rh6DG319200 Rh7AG143800 Rh7BG328400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	1 cut(s)	873
AclWI	GGATC	2 cut(s)	544, 574
AcoI	YGGCCR	1 cut(s)	796
AcsI	RAATTY	2 cut(s)	77, 125
AfiI	CCNNNNNNNGG	1 cut(s)	676
AgsI	TTSAA	5 cut(s)	82, 96, 130, 187, 226
AjiI	CACGTC	3 cut(s)	843, 906, 1003
AluBI	AGCT	8 cut(s)	29, 64, 147, 183, 193, 641, 710, 864
AluI	AGCT	8 cut(s)	29, 64, 147, 183, 193, 641, 710, 864
Alw26I	GTCTC	2 cut(s)	201, 806
AlwI	GGATC	2 cut(s)	544, 574
AlwNI	CAGNNNCTG	1 cut(s)	64
AoxI	GGCC	4 cut(s)	300, 679, 796, 1053
ApeKI	GCWGC	6 cut(s)	20, 461, 638, 647, 657, 710
ApoI	RAATTY	2 cut(s)	77, 125
AspS9I	GGNCC	3 cut(s)	679, 827, 890
AsuHPI	GGTGA	3 cut(s)	796, 890, 919
AvaII	GGWCC	2 cut(s)	827, 890
BarI	GAAGNNNNNNTAC	2 cut(s)	946, 978
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	6 cut(s)	7, 448, 634, 650, 669, 697
BccI	CCATC	4 cut(s)	284, 838, 901, 998
BceAI	ACGGC	2 cut(s)	226, 783
BclI	TGATCA	1 cut(s)	168
BcoDI	GTCTC	2 cut(s)	201, 806
BfmI	CTRYAG	2 cut(s)	56, 751
BisI	GCNGC	8 cut(s)	21, 303, 462, 639, 648, 658, 711, 916
BlsI	GCNGC	8 cut(s)	22, 304, 463, 640, 649, 659, 712, 917
Bme18I	GGWCC	2 cut(s)	827, 890
BmgBI	CACGTC	3 cut(s)	843, 906, 1003
BmgT120I	GGNCC	3 cut(s)	679, 827, 890
BmsI	GCATC	4 cut(s)	77, 126, 634, 820
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
BpmI	CTGGAG	1 cut(s)	624
BpuEI	CTTGAG	1 cut(s)	299
BsaAI	YACGTR	1 cut(s)	14
BsaBI	GATNNNNATC	2 cut(s)	535, 565
BsaJI	CCNNGG	1 cut(s)	456
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 597, 627
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse1I	ACTGG	1 cut(s)	682
Bse3DI	GCAATG	2 cut(s)	403, 990
Bse8I	GATNNNNATC	2 cut(s)	535, 565
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	2 cut(s)	299, 939
BseJI	GATNNNNATC	2 cut(s)	535, 565
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMI	GCAATG	2 cut(s)	403, 990
BseMII	CTCAG	2 cut(s)	474, 501
BseNI	ACTGG	1 cut(s)	682
BseRI	GAGGAG	1 cut(s)	589
BseXI	GCAGC	6 cut(s)	7, 448, 634, 650, 669, 697
BsgI	GTGCAG	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	873
BshFI	GGCC	4 cut(s)	302, 681, 798, 1055
BslFI	GGGAC	2 cut(s)	333, 1048
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	2 cut(s)	201, 806
BsmBI	CGTCTC	2 cut(s)	201, 806
BsmFI	GGGAC	2 cut(s)	333, 1048
BsnI	GGCC	4 cut(s)	302, 681, 798, 1055
Bsp143I	GATC	8 cut(s)	168, 373, 530, 536, 560, 566, 697, 924
BspANI	GGCC	4 cut(s)	302, 681, 798, 1055
BspCNI	CTCAG	2 cut(s)	475, 502
BspFNI	CGCG	1 cut(s)	873
BspHI	TCATGA	2 cut(s)	171, 412
BspMAI	CTGCAG	1 cut(s)	755
BspPI	GGATC	2 cut(s)	544, 574
BspQI	GCTCTTC	1 cut(s)	499
BsrBI	CCGCTC	1 cut(s)	261
BsrDI	GCAATG	2 cut(s)	403, 990
BsrI	ACTGG	1 cut(s)	682
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	8 cut(s)	168, 373, 530, 536, 560, 566, 697, 924
BssT1I	CCWWGG	1 cut(s)	456
Bst6I	CTCTTC	3 cut(s)	128, 170, 499
BstAPI	GCANNNNNTGC	2 cut(s)	387, 644
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	5 cut(s)	66, 286, 723, 862, 1057
BstDEI	CTNAG	2 cut(s)	483, 510
BstF5I	GGATG	2 cut(s)	299, 939
BstFNI	CGCG	1 cut(s)	873
BstKTI	GATC	8 cut(s)	171, 376, 533, 539, 563, 569, 700, 927
BstMAI	GTCTC	2 cut(s)	201, 806
BstMBI	GATC	8 cut(s)	168, 373, 530, 536, 560, 566, 697, 924
BstSFI	CTRYAG	2 cut(s)	56, 751
BstUI	CGCG	1 cut(s)	873
BstV1I	GCAGC	6 cut(s)	7, 448, 634, 650, 669, 697
BstV2I	GAAGAC	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	430
BsuRI	GGCC	4 cut(s)	302, 681, 798, 1055
BtgZI	GCGATG	1 cut(s)	303
BtrI	CACGTC	3 cut(s)	843, 906, 1003
BtsCI	GGATG	2 cut(s)	299, 939
BtsIMutI	CAGTG	1 cut(s)	689
Cac8I	GCNNGC	5 cut(s)	66, 286, 723, 862, 1057
CaiI	CAGNNNCTG	1 cut(s)	64
CciI	TCATGA	2 cut(s)	171, 412
Cfr13I	GGNCC	3 cut(s)	679, 827, 890
CseI	GACGC	3 cut(s)	325, 676, 862
CspCI	CAANNNNNGTGG	6 cut(s)	528, 563, 775, 810, 1024, 1059
CviAII	CATG	6 cut(s)	172, 413, 440, 489, 654, 770
DdeI	CTNAG	2 cut(s)	483, 510
DpnI	GATC	8 cut(s)	170, 375, 532, 538, 562, 568, 699, 926
DpnII	GATC	8 cut(s)	168, 373, 530, 536, 560, 566, 697, 924
EaeI	YGGCCR	1 cut(s)	796
Eam1104I	CTCTTC	3 cut(s)	128, 170, 499
EarI	CTCTTC	3 cut(s)	128, 170, 499
Eco130I	CCWWGG	1 cut(s)	456
Eco147I	AGGCCT	1 cut(s)	1055
Eco47I	GGWCC	2 cut(s)	827, 890
EcoRI	GAATTC	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	456
Esp3I	CGTCTC	2 cut(s)	201, 806
FaeI	CATG	6 cut(s)	175, 416, 443, 492, 657, 773
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	2 cut(s)	333, 1048
FatI	CATG	6 cut(s)	171, 412, 439, 488, 653, 769
FauI	CCCGC	3 cut(s)	277, 816, 878
FbaI	TGATCA	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	8 cut(s)	21, 303, 462, 639, 648, 658, 711, 916
FokI	GGATG	2 cut(s)	306, 926
Fsp4HI	GCNGC	8 cut(s)	21, 303, 462, 639, 648, 658, 711, 916
GluI	GCNGC	8 cut(s)	21, 303, 462, 639, 648, 658, 711, 916
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	4 cut(s)	302, 681, 798, 1055
HgaI	GACGC	3 cut(s)	325, 676, 862
Hin1II	CATG	6 cut(s)	175, 416, 443, 492, 657, 773
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	7 cut(s)	92, 161, 321, 473, 506, 512, 692
HphI	GGTGA	3 cut(s)	796, 890, 919
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	5 cut(s)	73, 484, 505, 511, 697
Hpy188III	TCNNGA	7 cut(s)	130, 172, 413, 534, 564, 603, 1077
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	2 cut(s)	341, 692
HpyAV	CCTTC	1 cut(s)	968
HpyCH4IV	ACGT	4 cut(s)	13, 842, 905, 1002
HpyCH4V	TGCA	5 cut(s)	381, 617, 638, 657, 753
HpyF3I	CTNAG	2 cut(s)	483, 510
HpySE526I	ACGT	4 cut(s)	13, 842, 905, 1002
Hsp92II	CATG	6 cut(s)	175, 416, 443, 492, 657, 773
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	8 cut(s)	168, 373, 530, 536, 560, 566, 697, 924
LguI	GCTCTTC	1 cut(s)	499
LmnI	GCTCC	2 cut(s)	190, 590
Lsp1109I	GCAGC	6 cut(s)	7, 448, 634, 650, 669, 697
LweI	GCATC	4 cut(s)	77, 126, 634, 820
MaeII	ACGT	4 cut(s)	13, 842, 905, 1002
MaeIII	GTNAC	1 cut(s)	1069
MalI	GATC	8 cut(s)	170, 375, 532, 538, 562, 568, 699, 926
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	8 cut(s)	168, 373, 530, 536, 560, 566, 697, 924
MboII	GAAGA	6 cut(s)	17, 62, 145, 187, 486, 658
MluCI	AATT	3 cut(s)	77, 87, 125
MlyI	GAGTC	3 cut(s)	155, 315, 521
MmeI	TCCRAC	1 cut(s)	198
MseI	TTAA	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	641
MvnI	CGCG	1 cut(s)	873
NdeII	GATC	8 cut(s)	168, 373, 530, 536, 560, 566, 697, 924
NlaIII	CATG	6 cut(s)	175, 416, 443, 492, 657, 773
PagI	TCATGA	2 cut(s)	171, 412
PceI	AGGCCT	1 cut(s)	1055
PciSI	GCTCTTC	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	1 cut(s)	790
PfeI	GAWTC	4 cut(s)	92, 473, 506, 692
PkrI	GCNGC	8 cut(s)	22, 304, 463, 640, 649, 659, 712, 917
PleI	GAGTC	3 cut(s)	155, 315, 520
PpsI	GAGTC	3 cut(s)	155, 315, 520
Ppu21I	YACGTR	1 cut(s)	14
PspPI	GGNCC	3 cut(s)	679, 827, 890
PstI	CTGCAG	1 cut(s)	755
PstNI	CAGNNNCTG	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	641
SalI	GTCGAC	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	499
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	8 cut(s)	21, 303, 462, 639, 648, 658, 711, 916
Sau3AI	GATC	8 cut(s)	168, 373, 530, 536, 560, 566, 697, 924
Sau96I	GGNCC	3 cut(s)	679, 827, 890
SbfI	CCTGCAGG	1 cut(s)	755
SchI	GAGTC	3 cut(s)	155, 315, 521
SdaI	CCTGCAGG	1 cut(s)	755
SfaNI	GCATC	4 cut(s)	77, 126, 634, 820
SfcI	CTRYAG	2 cut(s)	56, 751
SinI	GGWCC	2 cut(s)	827, 890
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse8387I	CCTGCAGG	1 cut(s)	755
Sse9I	AATT	3 cut(s)	77, 87, 125
SseBI	AGGCCT	1 cut(s)	1055
StuI	AGGCCT	1 cut(s)	1055
StyI	CCWWGG	1 cut(s)	456
TaiI	ACGT	4 cut(s)	16, 845, 908, 1005
TaqI	TCGA	7 cut(s)	153, 339, 372, 529, 690, 727, 1078
TasI	AATT	3 cut(s)	77, 87, 125
TauI	GCSGC	2 cut(s)	305, 918
TfiI	GAWTC	4 cut(s)	92, 473, 506, 692
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	1 cut(s)	689
TseI	GCWGC	6 cut(s)	20, 461, 638, 647, 657, 710
TspDTI	ATGAA	5 cut(s)	188, 378, 401, 429, 642
TspGWI	ACGGA	2 cut(s)	154, 219
TspRI	CASTG	1 cut(s)	689
VpaK11BI	GGWCC	2 cut(s)	827, 890
XapI	RAATTY	2 cut(s)	77, 125
XmiI	GTMKAC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.