Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0017863

Physical Location & Seq

Genomic Coordinates Reverse (-)

11548117 .. 11555198

Gene Structure 7082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG143800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGCGGGGCTTCCGTCATCAACAACGGCATTCACATTCCCCTGAAATTCAACTCAAACCTTCCTATGGTTTCATCACGATCCCCAGCCCCAAAATGGCGTAGGCCTCACTGTATTCACCGTCTTGTTCTTCGCCACTGCACAGGCACTTGGTTCTACACGCTTCAATTGAAGTGGTACGCATATCACTTTAAGGAAAAGCTCTCATGCTTTAGCCTTCTCTGCACACATTTTCCAGATGACCGATCAATTACCATTAAGAAGTTTATGAGTACTGCCCAAGTTGGGTATGAAGCTAGGTCTCTGGCCATTCGTGACATTATAATAACAATGCAGATGAGCAGCCATAACAATGTCTTAAAGCTGTTGGGCTGCTGCTTAGAGCTCCCTGTACCGGCTCTAGTGCTTGAATGTGCAATTGAAGGAGCTCTTGTTGATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

147

Amino Acids

16.66

Weight (kDa)

9.21

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017863)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00008920 Rroxscaffold_1G00025180 Rroxscaffold_3G00220930 Rroxscaffold_5G00340160
rosa_rugosa	Rorug04G0066400 Rorug04G0066500
rosa_samantha	Rh3BG059200 Rh3CG162900 Rh3DG059700 Rh6DG319200 Rh7AG143800 Rh7BG328400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	47
AfaI	GTAC	3 cut(s)	179, 274, 393
AfiI	CCNNNNNNNGG	4 cut(s)	67, 96, 285, 394
AgsI	TTSAA	5 cut(s)	52, 167, 172, 410, 422
AluBI	AGCT	5 cut(s)	202, 296, 364, 385, 428
AluI	AGCT	5 cut(s)	202, 296, 364, 385, 428
Alw21I	GWGCWC	2 cut(s)	387, 430
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	2 cut(s)	104, 306
ApeKI	GCWGC	3 cut(s)	342, 372, 375
ApoI	RAATTY	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	308
BanII	GRGCYC	2 cut(s)	387, 430
Bbv12I	GWGCWC	2 cut(s)	387, 430
BbvI	GCAGC	3 cut(s)	354, 359, 362
BceAI	ACGGC	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	2 cut(s)	297, 401
BisI	GCNGC	3 cut(s)	343, 373, 376
BlsI	GCNGC	3 cut(s)	344, 374, 377
BmcAI	AGTACT	1 cut(s)	274
BsaI	GGTCTC	1 cut(s)	306
BsaXI	ACNNNNNCTCC	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 96, 285, 394
Bse118I	RCCGGY	1 cut(s)	394
BseLI	CCNNNNNNNGG	4 cut(s)	67, 96, 285, 394
BseXI	GCAGC	3 cut(s)	354, 359, 362
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	2 cut(s)	124, 208
BshFI	GGCC	2 cut(s)	106, 308
BsiHKAI	GWGCWC	2 cut(s)	387, 430
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	4 cut(s)	67, 96, 285, 394
BsmAI	GTCTC	1 cut(s)	306
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	106, 308
Bso31I	GGTCTC	1 cut(s)	306
Bsp1286I	GDGCHC	2 cut(s)	387, 430
Bsp143I	GATC	2 cut(s)	80, 245
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	106, 308
BspPI	GGATC	1 cut(s)	75
BspTNI	GGTCTC	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	394
BssMI	GATC	2 cut(s)	80, 245
Bst4CI	ACNGT	2 cut(s)	113, 122
BstDEI	CTNAG	1 cut(s)	379
BstKTI	GATC	2 cut(s)	83, 248
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	2 cut(s)	80, 245
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	354, 359, 362
BsuRI	GGCC	2 cut(s)	106, 308
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	109, 136
Cfr10I	RCCGGY	1 cut(s)	394
Csp6I	GTAC	3 cut(s)	178, 273, 392
CspCI	CAANNNNNGTGG	2 cut(s)	155, 190
CviAII	CATG	1 cut(s)	207
CviQI	GTAC	3 cut(s)	178, 273, 392
DdeI	CTNAG	1 cut(s)	379
DpnI	GATC	2 cut(s)	82, 247
DpnII	GATC	2 cut(s)	80, 245
EaeI	YGGCCR	1 cut(s)	306
Ecl136II	GAGCTC	2 cut(s)	385, 428
Eco147I	AGGCCT	1 cut(s)	106
Eco24I	GRGCYC	2 cut(s)	387, 430
Eco31I	GGTCTC	1 cut(s)	306
Eco53kI	GAGCTC	2 cut(s)	385, 428
EcoICRI	GAGCTC	2 cut(s)	385, 428
EcoT38I	GRGCYC	2 cut(s)	387, 430
FaeI	CATG	1 cut(s)	210
FaiI	YATR	7 cut(s)	68, 184, 208, 269, 291, 323, 348
FalI	AAGNNNNNCTT	1 cut(s)	414
FatI	CATG	1 cut(s)	206
Fnu4HI	GCNGC	3 cut(s)	343, 373, 376
FriOI	GRGCYC	2 cut(s)	387, 430
Fsp4HI	GCNGC	3 cut(s)	343, 373, 376
FspBI	CTAG	2 cut(s)	297, 401
GluI	GCNGC	3 cut(s)	343, 373, 376
GsaI	CCCAGC	1 cut(s)	89
HaeIII	GGCC	2 cut(s)	106, 308
HapII	CCGG	1 cut(s)	395
Hin1II	CATG	1 cut(s)	210
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	110
Hpy188III	TCNNGA	3 cut(s)	78, 236, 314
HpyAV	CCTTC	3 cut(s)	71, 227, 416
HpyCH4III	ACNGT	2 cut(s)	113, 122
HpyCH4V	TGCA	4 cut(s)	141, 225, 334, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	1 cut(s)	379
Hsp92II	CATG	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	80, 245
LmnI	GCTCC	2 cut(s)	390, 425
LpnPI	CCDG	7 cut(s)	56, 99, 129, 249, 290, 402, 408
Lsp1109I	GCAGC	3 cut(s)	354, 359, 362
MaeI	CTAG	2 cut(s)	297, 401
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	2 cut(s)	82, 247
MboI	GATC	2 cut(s)	80, 245
MboII	GAAGA	1 cut(s)	122
MfeI	CAATTG	2 cut(s)	167, 417
MhlI	GDGCHC	2 cut(s)	387, 430
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	4 cut(s)	47, 167, 249, 417
MluNI	TGGCCA	1 cut(s)	308
MnlI	CCTC	1 cut(s)	117
Mox20I	TGGCCA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	3 cut(s)	192, 258, 359
MslI	CAYNNNNRTG	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	308
MspI	CCGG	1 cut(s)	395
MunI	CAATTG	2 cut(s)	167, 417
Mva1269I	GAATGC	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	222
NdeII	GATC	2 cut(s)	80, 245
NlaIII	CATG	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	314
PceI	AGGCCT	1 cut(s)	106
PctI	GAATGC	1 cut(s)	30
PkrI	GCNGC	3 cut(s)	344, 374, 377
PsiI	TTATAA	1 cut(s)	323
Psp124BI	GAGCTC	2 cut(s)	387, 430
PspFI	CCCAGC	1 cut(s)	85
RsaI	GTAC	3 cut(s)	179, 274, 393
RsaNI	GTAC	3 cut(s)	178, 273, 392
RseI	CAYNNNNRTG	1 cut(s)	351
SacI	GAGCTC	2 cut(s)	387, 430
SaqAI	TTAA	3 cut(s)	192, 258, 359
SatI	GCNGC	3 cut(s)	343, 373, 376
Sau3AI	GATC	2 cut(s)	80, 245
ScaI	AGTACT	1 cut(s)	274
SduI	GDGCHC	2 cut(s)	387, 430
SetI	ASST	7 cut(s)	63, 204, 298, 302, 366, 387, 430
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	4 cut(s)	47, 167, 249, 417
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	2 cut(s)	297, 401
SstI	GAGCTC	2 cut(s)	387, 430
StuI	AGGCCT	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	113, 122
TaqII	GACCGA	1 cut(s)	258
TasI	AATT	4 cut(s)	47, 167, 249, 417
TatI	WGTACW	1 cut(s)	272
Tru1I	TTAA	3 cut(s)	192, 258, 359
Tru9I	TTAA	3 cut(s)	192, 258, 359
TscAI	CASTG	2 cut(s)	116, 143
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	3 cut(s)	342, 372, 375
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	63, 306
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	2 cut(s)	116, 143
XapI	RAATTY	1 cut(s)	47
XcmI	CCANNNNNNNNNTGG	1 cut(s)	93
XspI	CTAG	2 cut(s)	297, 401
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.