Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018257

Physical Location & Seq

Genomic Coordinates Reverse (-)

15819028 .. 15822958

Gene Structure 3931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00012900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTGGACGGAAAAGTCATCAAGGCCCAGATTTGGGACACTGCCGGCCAAGAAAGGACAAGAAGATTACAACCGGCTGAGGCCTCTTTGCTATAGAGGTGCAGATGTATTCTTGTTGGCCTTTTCTCTCATTAGTAAAGCCAGCTATGAAAATATTGCCAAGAAGTGGATACCTGAATTGAGGCATTATGCCCCAACAGTCCCAATTGTGCTTGTGGGAATAAAACTAGATTTGCGAGACGACAAACAGTATTTGATTGATCATCCTGGTGCTACACCGATAGGAACTACACAGGGTGAGGAACTGAAGAAGACAATTGGTACTGCAGTCTATATTGAGTGCAGCTCCAAGACTCAGCAGGTGTCTATGAAAAGCAAGGAGATAAAAAGATACTACTGGTTTATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

Ras

Protein Analysis

136

Amino Acids

15.66

Weight (kDa)

9.52

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	19 - 120	4.5e-21	Ras family
Roc	PF08477	19 - 77	5.2e-07	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018257)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002701.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012900
rosa_rugosa	Rorug05G0409300 Rorug05G0409400 Rorug05G0409500 Rorug05G0409600
rosa_samantha	Rh2AG431000 Rh2CG416700 Rh6CG162200 Rh6DG153800
rosa_wichuraiana	Rw3G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	349
AasI	GACNNNNNNGTC	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	349
AccB7I	CCANNNNNTGG	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	3 cut(s)	32, 33, 165
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	2 cut(s)	144, 345
AluI	AGCT	2 cut(s)	144, 345
Alw26I	GTCTC	1 cut(s)	231
AoxI	GGCC	4 cut(s)	23, 45, 80, 117
ApeKI	GCWGC	1 cut(s)	342
AseI	ATTAAT	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	308
BaeI	ACNNNNGTAYC	2 cut(s)	312, 345
BbsI	GAAGAC	1 cut(s)	317
BbvCI	CCTCAGC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	267
BciVI	GTATCC	1 cut(s)	162
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	2 cut(s)	91, 324
BfuAI	ACCTGC	1 cut(s)	349
BfuI	GTATCC	1 cut(s)	162
BisI	GCNGC	1 cut(s)	343
BlsI	GCNGC	1 cut(s)	344
Bme1390I	CCNGG	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	317
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
Bpu10I	CCTNAGC	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 33, 165
Bse118I	RCCGGY	2 cut(s)	43, 72
Bse1I	ACTGG	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	3 cut(s)	32, 33, 165
BseMII	CTCAG	2 cut(s)	68, 368
BseNI	ACTGG	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	354
BsgI	GTGCAG	2 cut(s)	120, 361
BshFI	GGCC	4 cut(s)	25, 47, 82, 119
BsiSI	CCGG	2 cut(s)	44, 73
BslFI	GGGAC	2 cut(s)	49, 185
BslI	CCNNNNNNNGG	3 cut(s)	32, 33, 165
BsmAI	GTCTC	1 cut(s)	231
BsmBI	CGTCTC	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	49, 185
BsnI	GGCC	4 cut(s)	25, 47, 82, 119
Bsp143I	GATC	1 cut(s)	259
BspANI	GGCC	4 cut(s)	25, 47, 82, 119
BspCNI	CTCAG	2 cut(s)	69, 367
BspMAI	CTGCAG	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	349
BsrFI	RCCGGY	2 cut(s)	43, 72
BsrI	ACTGG	1 cut(s)	401
BssAI	RCCGGY	2 cut(s)	43, 72
BssMI	GATC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	199, 249
BstC8I	GCNNGC	2 cut(s)	45, 142
BstDEI	CTNAG	2 cut(s)	77, 354
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	259
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	2 cut(s)	91, 324
BstV1I	GCAGC	1 cut(s)	354
BstV2I	GAAGAC	1 cut(s)	317
BsuI	GTATCC	1 cut(s)	162
BsuRI	GGCC	4 cut(s)	25, 47, 82, 119
BtsCI	GGATG	1 cut(s)	262
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	38
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	2 cut(s)	45, 142
Cfr10I	RCCGGY	2 cut(s)	43, 72
Cfr13I	GGNCC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	321
CviJI	RGCY	8 cut(s)	25, 47, 76, 82, 119, 140, 144, 345
CviKI_1	RGCY	8 cut(s)	25, 47, 76, 82, 119, 140, 144, 345
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	2 cut(s)	77, 354
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
DraIII	CACNNNGTG	1 cut(s)	296
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	45
Eco147I	AGGCCT	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	231
FaiI	YATR	5 cut(s)	93, 147, 189, 333, 368
FaqI	GGGAC	2 cut(s)	49, 185
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	343
FokI	GGATG	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	343
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	1 cut(s)	343
HaeIII	GGCC	4 cut(s)	25, 47, 82, 119
HapII	CCGG	2 cut(s)	44, 73
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	2 cut(s)	44, 73
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	6
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4III	ACNGT	2 cut(s)	199, 249
HpyCH4V	TGCA	3 cut(s)	101, 326, 342
HpyF3I	CTNAG	2 cut(s)	77, 354
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	350
Lsp1109I	GCAGC	1 cut(s)	354
MaeI	CTAG	1 cut(s)	227
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	3 cut(s)	74, 319, 322
MfeI	CAATTG	2 cut(s)	204, 315
MluCI	AATT	4 cut(s)	176, 204, 315, 406
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	5 cut(s)	72, 89, 93, 174, 292
MroNI	GCCGGC	1 cut(s)	43
MseI	TTAA	2 cut(s)	405, 409
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	2 cut(s)	44, 73
MspR9I	CCNGG	1 cut(s)	267
MunI	CAATTG	2 cut(s)	204, 315
MvaI	CCWGG	1 cut(s)	267
NaeI	GCCGGC	1 cut(s)	45
NdeII	GATC	1 cut(s)	259
NgoMIV	GCCGGC	1 cut(s)	43
PacI	TTAATTAA	1 cut(s)	409
PaqCI	CACCTGC	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	82
PdiI	GCCGGC	1 cut(s)	45
PflMI	CCANNNNNTGG	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	344
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	328
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	405, 409
SatI	GCNGC	1 cut(s)	343
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	24
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	5 cut(s)	100, 146, 175, 347, 363
SfcI	CTRYAG	2 cut(s)	91, 324
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	4 cut(s)	176, 204, 315, 406
SseBI	AGGCCT	1 cut(s)	82
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	1 cut(s)	227
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	265
TaaI	ACNGT	2 cut(s)	199, 249
TasI	AATT	4 cut(s)	176, 204, 315, 406
Tru1I	TTAA	2 cut(s)	405, 409
Tru9I	TTAA	2 cut(s)	405, 409
TscAI	CASTG	1 cut(s)	45
TseI	GCWGC	1 cut(s)	342
TspDTI	ATGAA	2 cut(s)	162, 383
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	45
Van91I	CCANNNNNTGG	1 cut(s)	165
VspI	ATTAAT	1 cut(s)	405
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.