Rorug05G0409400
ERF Family

Belongs to the small GTPase superfamily. Rho family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
56519933 .. 56521403
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0409400.1

Sequence Viewer

Length: 480 bp
ATGGTGTGGATTCCAGTGATTGTGATGGTTCTGCTGAGGATACAACAGAGGATTAAAAGCGCAGAGCTGTTAACCAAGGAGCAAGAAAATGAACTTCCGAATTTTACACCATTCATTCCATTGATGTCTCCCTTGTTCGGGACTGATTATGAAAAGAACAATTTCAAAATTATTAATGAAGTTGAACCCATAGTAGCATCCTTCTCCACAGGAGCAGTTGGACTGATCTCAGCACTGATGATGGTTGAAATAATAAGCAAAACACTGCAGGAGCATCAGAGATGTAAATATTGTCTTGGAACTGCTTATGGCTCATCTTCTGATGCAATGACCATAATCCAACAAAGATCTCCTGTTGTTAAGGGGATGATGATTGAATTTGCTAAGAACTCAGTTGATTATGTTACTGCCAGCGCCCATCGGAAAGAAGCATGTTATTGTGTTTTCAAGCTTAAACTTTCAGGGGTGGCAGAGAATTAA

Protein Analysis

159

Amino Acids

17.81

Weight (kDa)

7.64

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018257)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 100, 377
AfiI CCNNNNNNNGG 2 cut(s) 137, 138
AgsI TTSAA 5 cut(s) 166, 185, 248, 377, 448
AluBI AGCT 2 cut(s) 67, 451
AluI AGCT 2 cut(s) 67, 451
Alw26I GTCTC 1 cut(s) 132
ApoI RAATTY 2 cut(s) 100, 377
AseI ATTAAT 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 2 cut(s) 62, 416
BbvCI CCTCAGC 1 cut(s) 35
BccI CCATC 3 cut(s) 19, 235, 426
BciVI GTATCC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 417
BfuI GTATCC 1 cut(s) 33
BglII AGATCT 1 cut(s) 347
BmsI GCATC 3 cut(s) 206, 283, 313
Bpu10I CCTNAGC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 138
Bse1I ACTGG 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 197, 372
BseLI CCNNNNNNNGG 2 cut(s) 137, 138
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 3 cut(s) 26, 243, 405
BseNI ACTGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 2 cut(s) 137, 138
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 225, 347
BspCNI CTCAG 3 cut(s) 27, 242, 404
BspMAI CTGCAG 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 333
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 2 cut(s) 225, 347
BssT1I CCWWGG 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 4 cut(s) 35, 229, 384, 391
BstF5I GGATG 2 cut(s) 197, 372
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 2 cut(s) 62, 416
BstKTI GATC 2 cut(s) 228, 350
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 225, 347
BstNSI RCATGY 1 cut(s) 435
BstSFI CTRYAG 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BsuI GTATCC 1 cut(s) 33
BtsCI GGATG 2 cut(s) 197, 372
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 3 cut(s) 21, 233, 263
Cac8I GCNNGC 1 cut(s) 412
CfoI GCGC 2 cut(s) 62, 416
CviAII CATG 1 cut(s) 432
CviJI RGCY 3 cut(s) 67, 312, 451
CviKI_1 RGCY 3 cut(s) 67, 312, 451
DdeI CTNAG 4 cut(s) 35, 229, 384, 391
DpnI GATC 2 cut(s) 227, 349
DpnII GATC 2 cut(s) 225, 347
Eco130I CCWWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 1 cut(s) 435
FaiI YATR 6 cut(s) 150, 191, 309, 335, 402, 433
FaqI GGGAC 1 cut(s) 154
FatI CATG 1 cut(s) 431
FokI GGATG 2 cut(s) 184, 379
GlaI GCGC 2 cut(s) 61, 415
HaeII RGCGCY 1 cut(s) 417
HhaI GCGC 2 cut(s) 62, 416
Hin1II CATG 1 cut(s) 435
Hin6I GCGC 2 cut(s) 60, 414
HinP1I GCGC 2 cut(s) 60, 414
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 1 cut(s) 10
HpaI GTTAAC 1 cut(s) 72
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 4 cut(s) 99, 279, 322, 423
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 268, 326
HpyF3I CTNAG 4 cut(s) 35, 229, 384, 391
Hsp92II CATG 1 cut(s) 435
HspAI GCGC 2 cut(s) 60, 414
KspAI GTTAAC 1 cut(s) 72
Kzo9I GATC 2 cut(s) 225, 347
LmnI GCTCC 3 cut(s) 79, 212, 271
LpnPI CCDG 6 cut(s) 27, 195, 254, 366, 424, 447
LweI GCATC 3 cut(s) 206, 283, 313
MaeIII GTNAC 1 cut(s) 403
MalI GATC 2 cut(s) 227, 349
MboI GATC 2 cut(s) 225, 347
MboII GAAGA 1 cut(s) 309
MflI RGATCY 1 cut(s) 347
MluCI AATT 5 cut(s) 100, 160, 168, 377, 475
MmeI TCCRAC 2 cut(s) 199, 364
MnlI CCTC 2 cut(s) 30, 42
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 6 cut(s) 54, 71, 174, 360, 453, 478
NdeII GATC 2 cut(s) 225, 347
NlaIII CATG 1 cut(s) 435
NspI RCATGY 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 10
PshBI ATTAAT 1 cut(s) 174
PstI CTGCAG 1 cut(s) 270
PsuI RGATCY 1 cut(s) 347
SaqAI TTAA 6 cut(s) 54, 71, 174, 360, 453, 478
Sau3AI GATC 2 cut(s) 225, 347
SetI ASST 2 cut(s) 69, 453
SfaNI GCATC 3 cut(s) 206, 283, 313
SfcI CTRYAG 1 cut(s) 266
Sse9I AATT 5 cut(s) 100, 160, 168, 377, 475
SspI AATATT 1 cut(s) 290
StyI CCWWGG 1 cut(s) 75
TasI AATT 5 cut(s) 100, 160, 168, 377, 475
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 6 cut(s) 54, 71, 174, 360, 453, 478
Tru9I TTAA 6 cut(s) 54, 71, 174, 360, 453, 478
TscAI CASTG 3 cut(s) 21, 240, 270
TspDTI ATGAA 4 cut(s) 103, 105, 165, 192
TspRI CASTG 3 cut(s) 21, 240, 270
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 2 cut(s) 100, 377
XceI RCATGY 1 cut(s) 435
XmnI GAANNNNTTC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.