Rh6CG162200
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018257
Physical Location & Seq
Forward (+)
21734228 .. 21736312
2085 bp
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UTR
Exon/CDS
Intron
Rh6CG162200.1

Sequence Viewer

Length: 294 bp
ATGGAAAAGTCATCAAGGCCCAGATTTGGGACACTGCCGGCCAAGAAAGGACAAGAAGATTACAACCGGCTGAGGCCTCTTTGCTATAGAGTGGATACTGAATTGAGGCATTATGCCCCAACAGTCCCAATTGTGCTTGTGGGAACAAAACTAGATTTGCGAGACGACAAACAGTATTTGATTGATCATCCTGGTGCTACACCGATAGGAACTACACAGGGTGAGGAACTGAAGAAGACAATTGGTGCTGCAGTCTATATTGAGTGCAGCTCCAATACTCAGCAGAGATCATAG

Protein Analysis

97

Amino Acids

10.93

Weight (kDa)

8.97

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 34 - 95 4.1e-06 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018257)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002701.1_g000001
rosa_roxburghii Rroxscaffold_1G00012900
rosa_rugosa Rorug05G0409300 Rorug05G0409400 Rorug05G0409500 Rorug05G0409600
rosa_samantha Rh2AG431000 Rh2CG416700 Rh6CG162200 Rh6DG153800
rosa_wichuraiana Rw3G029270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 251
AdeI CACNNNGTG 1 cut(s) 221
AfiI CCNNNNNNNGG 2 cut(s) 26, 27
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 1 cut(s) 270
AluI AGCT 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 156
AoxI GGCC 3 cut(s) 17, 39, 74
ApeKI GCWGC 2 cut(s) 248, 267
AspS9I GGNCC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 242
BbvCI CCTCAGC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 235, 279
BciT130I CCWGG 1 cut(s) 192
BciVI GTATCC 1 cut(s) 88
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 1 cut(s) 152
BfmI CTRYAG 2 cut(s) 85, 249
BfuI GTATCC 1 cut(s) 88
BisI GCNGC 2 cut(s) 249, 268
BlsI GCNGC 2 cut(s) 250, 269
Bme1390I CCNGG 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 242
BplI GAGNNNNNCTC 2 cut(s) 254, 286
Bpu10I CCTNAGC 1 cut(s) 71
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 27
Bse118I RCCGGY 2 cut(s) 37, 66
BseBI CCWGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 2 cut(s) 26, 27
BseMII CTCAG 2 cut(s) 62, 293
BseXI GCAGC 2 cut(s) 235, 279
BsgI GTGCAG 1 cut(s) 286
BshFI GGCC 3 cut(s) 19, 41, 76
BsiSI CCGG 2 cut(s) 38, 67
BslFI GGGAC 2 cut(s) 43, 110
BslI CCNNNNNNNGG 2 cut(s) 26, 27
BsmAI GTCTC 1 cut(s) 156
BsmBI CGTCTC 1 cut(s) 156
BsmFI GGGAC 2 cut(s) 43, 110
BsnI GGCC 3 cut(s) 19, 41, 76
Bsp143I GATC 2 cut(s) 184, 287
BspANI GGCC 3 cut(s) 19, 41, 76
BspCNI CTCAG 2 cut(s) 63, 292
BspMAI CTGCAG 1 cut(s) 253
BsrFI RCCGGY 2 cut(s) 37, 66
BssAI RCCGGY 2 cut(s) 37, 66
BssMI GATC 2 cut(s) 184, 287
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 124, 174
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 71, 279
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 2 cut(s) 187, 290
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 2 cut(s) 184, 287
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 2 cut(s) 85, 249
BstV1I GCAGC 2 cut(s) 235, 279
BstV2I GAAGAC 1 cut(s) 242
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 3 cut(s) 19, 41, 76
BtsCI GGATG 1 cut(s) 187
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 39
Cfr10I RCCGGY 2 cut(s) 37, 66
Cfr13I GGNCC 1 cut(s) 18
CviJI RGCY 5 cut(s) 19, 41, 70, 76, 270
CviKI_1 RGCY 5 cut(s) 19, 41, 70, 76, 270
DdeI CTNAG 2 cut(s) 71, 279
DpnI GATC 2 cut(s) 186, 289
DpnII GATC 2 cut(s) 184, 287
DraIII CACNNNGTG 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 156
FaiI YATR 4 cut(s) 87, 114, 258, 292
FaqI GGGAC 2 cut(s) 43, 110
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 249, 268
FokI GGATG 1 cut(s) 174
Fsp4HI GCNGC 2 cut(s) 249, 268
FspBI CTAG 1 cut(s) 152
GluI GCNGC 2 cut(s) 249, 268
HaeIII GGCC 3 cut(s) 19, 41, 76
HapII CCGG 2 cut(s) 38, 67
HpaII CCGG 2 cut(s) 38, 67
HphI GGTGA 1 cut(s) 233
HpyCH4III ACNGT 2 cut(s) 124, 174
HpyCH4V TGCA 2 cut(s) 251, 267
HpyF3I CTNAG 2 cut(s) 71, 279
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 184, 287
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 6 cut(s) 34, 51, 80, 177, 203, 204
Lsp1109I GCAGC 2 cut(s) 235, 279
MaeI CTAG 1 cut(s) 152
MalI GATC 2 cut(s) 186, 289
MboI GATC 2 cut(s) 184, 287
MboII GAAGA 3 cut(s) 68, 244, 247
MfeI CAATTG 2 cut(s) 129, 240
MluCI AATT 3 cut(s) 101, 129, 240
MnlI CCTC 4 cut(s) 66, 87, 99, 217
MroNI GCCGGC 1 cut(s) 37
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 2 cut(s) 38, 67
MspR9I CCNGG 1 cut(s) 192
MunI CAATTG 2 cut(s) 129, 240
MvaI CCWGG 1 cut(s) 192
NaeI GCCGGC 1 cut(s) 39
NdeII GATC 2 cut(s) 184, 287
NgoMIV GCCGGC 1 cut(s) 37
PceI AGGCCT 1 cut(s) 76
PdiI GCCGGC 1 cut(s) 39
PkrI GCNGC 2 cut(s) 250, 269
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspPI GGNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 192
SatI GCNGC 2 cut(s) 249, 268
Sau3AI GATC 2 cut(s) 184, 287
Sau96I GGNCC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 192
SetI ASST 1 cut(s) 272
SfcI CTRYAG 2 cut(s) 85, 249
SmiMI CAYNNNNRTG 1 cut(s) 192
Sse9I AATT 3 cut(s) 101, 129, 240
SseBI AGGCCT 1 cut(s) 76
SspMI CTAG 1 cut(s) 152
StuI AGGCCT 1 cut(s) 76
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 124, 174
TasI AATT 3 cut(s) 101, 129, 240
TscAI CASTG 1 cut(s) 39
TseI GCWGC 2 cut(s) 248, 267
TspRI CASTG 1 cut(s) 39
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.