Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0018257

Physical Location & Seq

Genomic Coordinates Reverse (-)

44900298 .. 44903857

Gene Structure 3560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G029270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTTGTGTCACTCTCTTTCAGACAATGCACTTGAATTGATGTTCTTGGATGTGGACGGAAAAGTCATCAAGGCCCAGATTTGGGATACTGCCGGACAAGAAGATTACAACCGGCTGAGGCCTCTTTGCTATAGAGGTGCAGATGTGTTCTTGTTGGCCTTCTCTCTCATCAGTAAAGCCAGCTATGAAAATATTGCCAAGAAGTGGATACCTGAATTGAGGCATTATGCCCCAACAGTCCCAATTGTGCTTGTGGGAACAAAACTAGATTTGCGAGATGACAAACAGTATTTGATTGATCATCCTGGTGCTACACCGATAGGAACTACACAGGGTGAGGAACTGAAGAAGACAATTGGTGCTGCAGTCTATATTGAGTGCAGCTCCAAGACTCAGCAGATCATAGAAAAAGCTTTAAGGGGGTATATTTCCCCACAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418

Pfam Domains

Protein Families

Ras

Protein Analysis

147

Amino Acids

16.48

Weight (kDa)

6.28

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	16 - 140	1.6e-31	Ras family
Roc	PF08477	19 - 90	2.9e-15	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018257)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002701.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012900
rosa_rugosa	Rorug05G0409300 Rorug05G0409400 Rorug05G0409500 Rorug05G0409600
rosa_samantha	Rh2AG431000 Rh2CG416700 Rh6CG162200 Rh6DG153800
rosa_wichuraiana	Rw3G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AccB7I	CCANNNNNTGG	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	365
AdeI	CACNNNGTG	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	81, 82, 204
AgsI	TTSAA	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	3 cut(s)	183, 384, 413
AluI	AGCT	3 cut(s)	183, 384, 413
AoxI	GGCC	3 cut(s)	72, 119, 156
ApeKI	GCWGC	2 cut(s)	362, 381
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	356
BbvCI	CCTCAGC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	349, 393
BciT130I	CCWGG	1 cut(s)	306
BciVI	GTATCC	2 cut(s)	79, 201
BclI	TGATCA	1 cut(s)	298
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	2 cut(s)	130, 363
BfuI	GTATCC	2 cut(s)	79, 201
BisI	GCNGC	2 cut(s)	363, 382
BlsI	GCNGC	2 cut(s)	364, 383
Bme1390I	CCNGG	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	356
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
Bpu10I	CCTNAGC	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 82, 204
Bse118I	RCCGGY	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	55, 301
BseLI	CCNNNNNNNGG	3 cut(s)	81, 82, 204
BseMII	CTCAG	2 cut(s)	107, 407
BseXI	GCAGC	2 cut(s)	349, 393
BsgI	GTGCAG	2 cut(s)	159, 400
BshFI	GGCC	3 cut(s)	74, 121, 158
BsiSI	CCGG	2 cut(s)	93, 112
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	3 cut(s)	81, 82, 204
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	3 cut(s)	74, 121, 158
Bsp143I	GATC	2 cut(s)	298, 399
BspANI	GGCC	3 cut(s)	74, 121, 158
BspCNI	CTCAG	2 cut(s)	108, 406
BspMAI	CTGCAG	1 cut(s)	367
BsrFI	RCCGGY	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	111
BssMI	GATC	2 cut(s)	298, 399
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	238, 288
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	2 cut(s)	116, 393
BstF5I	GGATG	2 cut(s)	55, 301
BstKTI	GATC	2 cut(s)	301, 402
BstMBI	GATC	2 cut(s)	298, 399
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	2 cut(s)	130, 363
BstV1I	GCAGC	2 cut(s)	349, 393
BstV2I	GAAGAC	1 cut(s)	356
BsuI	GTATCC	2 cut(s)	79, 201
BsuRI	GGCC	3 cut(s)	74, 121, 158
BtsCI	GGATG	2 cut(s)	55, 301
Cac8I	GCNNGC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	73
CviJI	RGCY	8 cut(s)	74, 115, 121, 158, 179, 183, 384, 413
CviKI_1	RGCY	8 cut(s)	74, 115, 121, 158, 179, 183, 384, 413
DdeI	CTNAG	2 cut(s)	116, 393
DpnI	GATC	2 cut(s)	300, 401
DpnII	GATC	2 cut(s)	298, 399
DraIII	CACNNNGTG	1 cut(s)	335
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
Eco147I	AGGCCT	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	304
FaiI	YATR	6 cut(s)	132, 186, 228, 372, 404, 426
FaqI	GGGAC	1 cut(s)	224
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	363, 382
FokI	GGATG	2 cut(s)	62, 288
Fsp4HI	GCNGC	2 cut(s)	363, 382
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	2 cut(s)	363, 382
HaeIII	GGCC	3 cut(s)	74, 121, 158
HapII	CCGG	2 cut(s)	93, 112
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	1 cut(s)	391
HpaII	CCGG	2 cut(s)	93, 112
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	238, 288
HpyCH4V	TGCA	4 cut(s)	29, 140, 365, 381
HpyF3I	CTNAG	2 cut(s)	116, 393
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	298, 399
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	8 cut(s)	89, 106, 125, 193, 225, 291, 317, 318
Lsp1109I	GCAGC	2 cut(s)	349, 393
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	300, 401
MboI	GATC	2 cut(s)	298, 399
MboII	GAAGA	3 cut(s)	113, 358, 361
MfeI	CAATTG	2 cut(s)	243, 354
MluCI	AATT	4 cut(s)	35, 215, 243, 354
MlyI	GAGTC	1 cut(s)	385
MnlI	CCTC	5 cut(s)	111, 128, 132, 213, 331
MseI	TTAA	2 cut(s)	416, 442
MslI	CAYNNNNRTG	1 cut(s)	306
MspI	CCGG	2 cut(s)	93, 112
MspR9I	CCNGG	1 cut(s)	306
MunI	CAATTG	2 cut(s)	243, 354
MvaI	CCWGG	1 cut(s)	306
NdeII	GATC	2 cut(s)	298, 399
NmuCI	GTSAC	1 cut(s)	8
PceI	AGGCCT	1 cut(s)	121
PflMI	CCANNNNNTGG	1 cut(s)	204
PkrI	GCNGC	2 cut(s)	364, 383
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	416, 442
SatI	GCNGC	2 cut(s)	363, 382
Sau3AI	GATC	2 cut(s)	298, 399
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	5 cut(s)	139, 185, 214, 386, 415
SfcI	CTRYAG	2 cut(s)	130, 363
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	4 cut(s)	35, 215, 243, 354
SseBI	AGGCCT	1 cut(s)	121
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	266
StuI	AGGCCT	1 cut(s)	121
StyD4I	CCNGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	238, 288
TasI	AATT	4 cut(s)	35, 215, 243, 354
Tru1I	TTAA	2 cut(s)	416, 442
Tru9I	TTAA	2 cut(s)	416, 442
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	362, 381
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	201
TspGWI	ACGGA	1 cut(s)	72
Van91I	CCANNNNNTGG	1 cut(s)	204
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.